Wall clock time and date at job start Tue Mar 31 2020 15:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34220 * 117.00118 * 2 1 4 4 O 1.20829 * 120.00045 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99957 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46918 * 180.02562 * 5 3 2 7 7 C 1.36787 * 120.00032 * 274.15999 * 6 5 3 8 8 H 1.08006 * 119.99642 * 132.26758 * 7 6 5 9 9 C 1.39074 * 120.00370 * 312.27144 * 7 6 5 10 10 N 1.31352 * 119.99372 * 3.11392 * 9 7 6 11 11 Si 1.86801 * 120.00026 * 183.10947 * 9 7 6 12 12 H 1.48502 * 109.46793 * 90.00313 * 11 9 7 13 13 H 1.48500 * 109.46712 * 209.99938 * 11 9 7 14 14 H 1.48495 * 109.47193 * 330.00045 * 11 9 7 15 15 C 1.34777 * 120.00081 * 94.16958 * 6 5 3 16 16 O 1.21704 * 120.00195 * 4.02874 * 15 6 5 17 17 C 1.46809 * 119.99923 * 184.03659 * 15 6 5 18 18 O 1.34945 * 125.14128 * 354.23439 * 17 15 6 19 19 C 1.34744 * 110.86745 * 180.02562 * 18 17 15 20 20 C 1.40789 * 107.60702 * 0.22864 * 19 18 17 21 21 C 1.39690 * 120.08329 * 180.30750 * 20 19 18 22 22 C 1.36660 * 119.70560 * 359.75112 * 21 20 19 23 23 C 1.38792 * 120.44560 * 359.97438 * 22 21 20 24 24 C 1.37858 * 120.74629 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.07357 * 179.97438 * 24 23 22 26 26 C 1.35963 * 125.13859 * 174.83018 * 17 15 6 27 27 C 1.50704 * 126.96444 * 359.40863 * 26 17 15 28 28 H 1.09005 * 109.47766 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46891 * 299.99072 * 1 2 3 30 30 H 1.09002 * 109.47559 * 59.99572 * 1 2 3 31 31 H 1.09003 * 109.47338 * 60.00651 * 5 3 2 32 32 H 1.09001 * 109.47149 * 300.00087 * 5 3 2 33 33 H 0.97009 * 119.99595 * 179.97438 * 10 9 7 34 34 H 1.07997 * 120.14594 * 179.77137 * 21 20 19 35 35 H 1.08005 * 119.77413 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.62625 * 179.97438 * 23 22 21 37 37 H 1.08991 * 109.47273 * 89.99704 * 25 24 23 38 38 H 1.09000 * 109.47128 * 210.00296 * 25 24 23 39 39 H 1.09007 * 109.47037 * 330.00050 * 25 24 23 40 40 H 1.09004 * 109.46939 * 270.76636 * 27 26 17 41 41 H 1.08997 * 109.47061 * 30.76700 * 27 26 17 42 42 H 1.09004 * 109.47235 * 150.77197 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.0927 3.3606 -1.1809 8 1 3.6510 4.3410 -1.2826 9 6 4.7742 2.7907 -2.2509 10 7 5.2584 1.5740 -2.1479 11 14 5.0009 3.7554 -3.8344 12 1 6.2649 4.5316 -3.7644 13 1 5.0601 2.8154 -4.9825 14 1 3.8578 4.6860 -4.0150 15 6 4.2546 3.3010 1.1645 16 8 4.2274 2.6764 2.2087 17 6 4.5846 4.7315 1.1734 18 8 4.7523 5.4968 0.0746 19 6 5.0484 6.7665 0.4147 20 6 5.0812 6.8343 1.8205 21 6 5.3609 8.0460 2.4568 22 6 5.6074 9.1627 1.7086 23 6 5.5819 9.1002 0.3223 24 6 5.3079 7.9141 -0.3248 25 6 5.2837 7.8636 -1.8307 26 6 4.7787 5.4830 2.2897 27 6 4.6859 5.0203 3.7210 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9557 0.7809 -0.8909 32 1 3.9564 0.7804 0.8891 33 1 5.7334 1.1763 -2.8944 34 1 5.3827 8.1000 3.5352 35 1 5.8242 10.1001 2.1994 36 1 5.7782 9.9909 -0.2560 37 1 6.2800 7.6246 -2.2023 38 1 4.5805 7.0974 -2.1572 39 1 4.9728 8.8324 -2.2218 40 1 3.6612 5.1354 4.0743 41 1 4.9761 3.9715 3.7833 42 1 5.3533 5.6195 4.3405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120687912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:30 Heat of formation + Delta-G solvation = -102.554547 kcal Electronic energy + Delta-G solvation = -29097.336037 eV Core-core repulsion = 25008.765410 eV Total energy + Delta-G solvation = -4088.570627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.38518 -41.57932 -40.28211 -38.84200 -37.61810 -36.86426 -35.12548 -33.70043 -32.90189 -31.32432 -30.22531 -28.60072 -27.98663 -27.72439 -26.67372 -24.35133 -23.43872 -22.27075 -21.39668 -20.53138 -19.78106 -18.76158 -18.59812 -17.85000 -17.40838 -17.30326 -17.15636 -16.79267 -16.60675 -16.28082 -15.67147 -15.39703 -14.97245 -14.52678 -14.44694 -14.43715 -14.26713 -14.18017 -14.02187 -13.65115 -13.51410 -13.28564 -13.17316 -13.09045 -12.97493 -12.89193 -12.74498 -12.55699 -12.43770 -12.13818 -11.80674 -11.79962 -11.60490 -11.21543 -10.85788 -10.64313 -9.75996 -9.49888 -8.94541 -8.43725 -6.35405 -0.32623 0.45193 0.86988 1.22399 1.36589 1.37714 1.47890 1.62681 1.81099 2.18193 2.36165 2.70948 2.76257 2.97831 3.58005 3.62379 3.92237 4.02519 4.03257 4.12929 4.27382 4.30242 4.36215 4.39749 4.44581 4.48225 4.62492 4.64355 4.72999 4.75922 4.81558 4.90417 4.94716 5.03886 5.19534 5.29332 5.30566 5.45469 5.49093 5.51910 5.54216 5.69847 5.80854 6.21296 6.28863 6.78446 6.90671 7.17214 7.60866 8.57103 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.005104 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.382832 B = 5484.659798 C = 7071.268771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.537 6.537 5 C 0.106 3.894 6 N -0.420 5.420 7 C -0.337 4.337 8 H 0.085 0.915 9 C 0.013 3.987 10 N -0.891 5.891 11 Si 0.979 3.021 12 H -0.265 1.265 13 H -0.268 1.268 14 H -0.265 1.265 15 C 0.543 3.457 16 O -0.590 6.590 17 C -0.021 4.021 18 O -0.168 6.168 19 C 0.020 3.980 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.129 4.129 23 C -0.083 4.083 24 C -0.096 4.096 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.078 4.078 28 H 0.140 0.860 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.282 0.718 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 9.967 2.800 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.296 3.704 4 O -0.427 6.427 5 C -0.018 4.018 6 N -0.137 5.137 7 C -0.464 4.464 8 H 0.103 0.897 9 C -0.190 4.190 10 N -0.529 5.529 11 Si 0.801 3.199 12 H -0.190 1.190 13 H -0.192 1.192 14 H -0.189 1.189 15 C 0.334 3.666 16 O -0.478 6.478 17 C -0.071 4.071 18 O -0.069 6.069 19 C -0.029 4.029 20 C -0.153 4.153 21 C -0.093 4.093 22 C -0.147 4.147 23 C -0.101 4.101 24 C -0.096 4.096 25 C -0.170 4.170 26 C -0.126 4.126 27 C -0.134 4.134 28 H 0.158 0.842 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.169 0.831 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.462 9.637 2.867 10.065 hybrid contribution -0.348 -0.259 -0.802 0.911 sum -0.810 9.378 2.065 9.637 Atomic orbital electron populations 1.23534 0.75165 1.05766 1.02040 1.86506 1.24919 1.32499 1.84099 1.24936 0.93182 0.81369 0.70870 1.90565 1.67615 1.37619 1.46862 1.21429 0.85527 0.86704 1.08140 1.43045 1.55447 1.09575 1.05594 1.19598 1.34990 1.02047 0.89810 0.89749 1.26321 0.93184 0.96716 1.02763 1.69464 1.35080 1.14185 1.34135 0.85142 0.79436 0.78568 0.76743 1.18979 1.19218 1.18936 1.17510 0.80194 0.84507 0.84425 1.90626 1.59457 1.65247 1.32482 1.21737 1.08171 0.92062 0.85132 1.84557 1.72098 1.17569 1.32667 1.20544 1.02246 0.85488 0.94602 1.20031 1.07744 0.94701 0.92804 1.20666 0.97780 0.89475 1.01334 1.21190 1.00745 0.99170 0.93546 1.21324 0.97481 0.96044 0.95247 1.19246 1.04085 0.89564 0.96746 1.20783 1.02480 1.03782 0.89957 1.21707 1.02745 0.91556 0.96600 1.20319 1.02716 1.02195 0.88173 0.84162 0.92498 0.92512 0.82523 0.87623 0.90703 0.83118 0.81162 0.81061 0.90752 0.93895 0.87854 0.90822 0.91243 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.36 -14.19 10.56 -51.32 -0.54 -14.74 16 3 C 0.45 21.54 8.00 71.24 0.57 22.11 16 4 O -0.54 -28.42 16.11 21.96 0.35 -28.06 16 5 C 0.11 5.32 5.72 85.63 0.49 5.81 16 6 N -0.42 -22.98 2.02 -644.00 -1.30 -24.28 16 7 C -0.34 -18.55 7.57 84.12 0.64 -17.92 16 8 H 0.09 4.85 6.26 -2.91 -0.02 4.83 16 9 C 0.01 0.69 5.39 84.97 0.46 1.15 16 10 N -0.89 -46.26 10.87 21.68 0.24 -46.02 16 11 Si 0.98 41.08 29.56 68.60 2.03 43.11 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 15 C 0.54 29.49 7.60 86.48 0.66 30.15 16 16 O -0.59 -32.14 14.10 -4.36 -0.06 -32.20 16 17 C -0.02 -1.05 6.78 23.98 0.16 -0.89 16 18 O -0.17 -8.23 7.49 -13.26 -0.10 -8.33 16 19 C 0.02 0.80 7.07 23.07 0.16 0.96 16 20 C -0.15 -5.60 6.37 -20.23 -0.13 -5.73 16 21 C -0.07 -1.96 10.06 22.25 0.22 -1.74 16 22 C -0.13 -2.64 9.98 22.03 0.22 -2.42 16 23 C -0.08 -1.85 9.67 22.31 0.22 -1.63 16 24 C -0.10 -3.00 5.89 -19.78 -0.12 -3.11 16 25 C -0.11 -3.18 10.02 71.23 0.71 -2.47 16 26 C -0.12 -5.16 6.39 -18.32 -0.12 -5.27 16 27 C -0.08 -2.72 9.87 71.24 0.70 -2.02 16 28 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 29 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 31 H 0.16 8.02 5.31 -2.39 -0.01 8.00 16 32 H 0.11 5.10 7.25 -2.39 -0.02 5.08 16 33 H 0.28 13.58 8.31 -92.70 -0.77 12.81 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.10 2.06 8.09 -2.38 -0.02 2.04 16 40 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.07 2.74 6.30 -2.39 -0.02 2.73 16 42 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -72.46 361.58 7.73 -64.74 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.06 Total: 26.81 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.05 Total: 18.99 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.06 Total: -70.30 kcal Atomic # 8 Polarization: -82.99 SS G_CDS: -0.35 Total: -83.34 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -72.46 7.73 -64.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120687912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.818 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds