Wall clock time and date at job start Tue Mar 31 2020 16:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47243 * 65.00106 * 4 3 2 6 6 C 1.46498 * 120.00072 * 84.99392 * 5 4 3 7 7 C 1.50708 * 109.46785 * 85.00247 * 6 5 4 8 8 C 1.34516 * 125.78754 * 90.00046 * 7 6 5 9 9 C 1.41376 * 106.84089 * 180.02562 * 8 7 6 10 10 C 1.34515 * 106.84242 * 0.02562 * 9 8 7 11 11 C 1.50695 * 125.79319 * 179.73499 * 10 9 8 12 12 O 1.34298 * 125.79175 * 270.02201 * 7 6 5 13 13 S 1.65600 * 120.00129 * 265.00216 * 5 4 3 14 14 O 1.42099 * 104.27847 * 26.06423 * 13 5 4 15 15 O 1.42098 * 104.28124 * 153.92595 * 13 5 4 16 16 C 1.81403 * 104.44560 * 269.99722 * 13 5 4 17 17 C 1.53009 * 109.47047 * 179.97438 * 16 13 5 18 18 C 1.50695 * 109.47049 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00221 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47295 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46998 * 120.00050 * 22 20 18 25 25 H 1.48499 * 109.47126 * 239.99664 * 22 20 18 26 26 H 1.08994 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46846 * 300.00654 * 1 2 3 28 28 H 1.09009 * 109.46711 * 59.99690 * 1 2 3 29 29 H 1.08998 * 109.47030 * 59.99752 * 3 2 1 30 30 H 1.09002 * 109.46722 * 299.99876 * 3 2 1 31 31 H 1.09000 * 109.47553 * 305.00316 * 4 3 2 32 32 H 1.08999 * 109.47024 * 184.99842 * 4 3 2 33 33 H 1.09000 * 109.47212 * 325.00690 * 6 5 4 34 34 H 1.09003 * 109.47609 * 205.00347 * 6 5 4 35 35 H 1.08003 * 126.58045 * 0.04405 * 8 7 6 36 36 H 1.07995 * 126.58211 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47122 * 90.00090 * 11 10 9 38 38 H 1.09004 * 109.47299 * 210.00077 * 11 10 9 39 39 H 1.09003 * 109.47154 * 330.00412 * 11 10 9 40 40 H 1.08995 * 109.47320 * 299.99447 * 16 13 5 41 41 H 1.08997 * 109.47356 * 60.00117 * 16 13 5 42 42 H 1.09001 * 109.46672 * 300.00337 * 17 16 13 43 43 H 1.08997 * 109.46863 * 59.99918 * 17 16 13 44 44 H 0.96996 * 120.00110 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1828 1.3880 -2.4444 7 6 5.5702 1.9759 -2.4154 8 6 6.6747 1.4117 -2.9361 9 6 7.7457 2.2996 -2.6844 10 6 7.2318 3.3530 -2.0245 11 6 8.0049 4.5529 -1.5413 12 8 5.9135 3.1518 -1.8650 13 16 4.2424 -1.0694 -1.3165 14 8 3.4060 -1.6017 -0.2985 15 8 4.0371 -1.4033 -2.6824 16 6 5.9900 -1.2619 -0.8699 17 6 6.3621 -2.7459 -0.8942 18 6 7.8140 -2.9058 -0.5237 19 1 8.4118 -2.0360 -0.2943 20 6 8.3796 -4.1625 -0.4787 21 7 7.6518 -5.2216 -0.7586 22 14 10.1792 -4.3607 -0.0188 23 1 10.7714 -3.0258 0.2498 24 1 10.2890 -5.2045 1.1983 25 1 10.9076 -5.0098 -1.1384 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8509 0.5684 0.8426 32 1 3.9785 2.1764 0.0902 33 1 3.4476 2.1925 -2.4618 34 1 4.0680 0.7715 -3.3360 35 1 6.7322 0.4627 -3.4484 36 1 8.7783 2.1590 -2.9676 37 1 8.0145 5.3163 -2.3194 38 1 7.5314 4.9535 -0.6450 39 1 9.0282 4.2568 -1.3102 40 1 6.6094 -0.7200 -1.5843 41 1 6.1554 -0.8627 0.1308 42 1 5.7425 -3.2875 -0.1795 43 1 6.1965 -3.1456 -1.8946 44 1 8.0498 -6.1056 -0.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131740144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:35 Heat of formation + Delta-G solvation = -103.682438 kcal Electronic energy + Delta-G solvation = -27660.043399 eV Core-core repulsion = 23706.867814 eV Total energy + Delta-G solvation = -3953.175585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55014 -38.11704 -36.55241 -36.12683 -35.22269 -33.83752 -33.14850 -32.28161 -31.07354 -30.09038 -27.71511 -26.12084 -25.56038 -24.39417 -22.55670 -21.60409 -21.40219 -20.17399 -18.50168 -17.56783 -16.81428 -16.75886 -16.41118 -16.17332 -15.74991 -15.56241 -15.20631 -14.69194 -14.54234 -14.43763 -14.24543 -13.59786 -13.33824 -13.11777 -13.06798 -12.88321 -12.74352 -12.45461 -12.27832 -12.21133 -11.91941 -11.72724 -11.65891 -11.46182 -11.36092 -11.08076 -11.05570 -10.93572 -10.88141 -10.33649 -10.32345 -9.81303 -9.71029 -9.57120 -9.35005 -8.84209 -8.46262 -8.30303 -6.08012 -4.12816 0.84461 1.66872 2.60630 2.85534 3.18363 3.27568 3.34699 3.38466 3.86669 4.37532 4.45984 4.58375 4.65366 4.79409 4.89704 5.04785 5.08568 5.09528 5.16210 5.27158 5.27195 5.31013 5.36049 5.38590 5.41676 5.50376 5.56217 5.68377 5.74043 5.77683 5.82552 5.89403 5.99163 6.10435 6.15571 6.57180 6.59661 6.60799 7.18265 7.28644 7.36673 7.42831 7.85821 8.23762 8.90887 9.51497 11.03174 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.005085 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.699265 B = 5505.495334 C = 7986.038293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.039 3.961 4 C 0.127 3.873 5 N -0.995 5.995 6 C 0.198 3.802 7 C -0.042 4.042 8 C -0.191 4.191 9 C -0.204 4.204 10 C -0.019 4.019 11 C -0.071 4.071 12 O -0.172 6.172 13 S 2.585 3.415 14 O -0.932 6.932 15 O -0.967 6.967 16 C -0.596 4.596 17 C 0.030 3.970 18 C -0.516 4.516 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 20.603 -1.046 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C -0.040 4.040 4 C 0.001 3.999 5 N -0.828 5.828 6 C 0.072 3.928 7 C -0.094 4.094 8 C -0.212 4.212 9 C -0.224 4.224 10 C -0.069 4.069 11 C -0.128 4.128 12 O -0.069 6.069 13 S 2.683 3.317 14 O -0.922 6.922 15 O -0.958 6.958 16 C -0.728 4.728 17 C -0.009 4.009 18 C -0.555 4.555 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.151 19.821 -1.131 21.461 hybrid contribution 1.624 0.252 0.335 1.678 sum -6.526 20.073 -0.795 21.122 Atomic orbital electron populations 1.22733 0.82084 1.02781 0.99112 1.88273 1.18568 1.25768 1.95110 1.22993 0.94658 0.86208 1.00100 1.21289 0.92378 1.00128 0.86118 1.58007 1.81714 1.27023 1.16085 1.19705 0.88291 0.95343 0.89464 1.23060 0.98274 0.86192 1.01836 1.21833 0.91945 1.02106 1.05266 1.21604 1.00703 0.94989 1.05068 1.22420 0.81467 0.99544 1.03512 1.20272 0.98352 0.92531 1.01599 1.83919 1.24841 1.35455 1.62684 1.06026 0.78699 0.72133 0.74864 1.93615 1.63825 1.75479 1.59323 1.93504 1.86067 1.81343 1.34852 1.30604 1.21178 1.10317 1.10725 1.18938 0.99039 0.84119 0.98778 1.21044 0.94332 0.92767 1.47388 0.92083 1.25060 0.98349 0.95884 0.95173 1.69969 1.36143 0.98393 1.48433 0.86445 0.84620 0.78217 0.78203 1.19676 1.20817 1.20810 0.89622 0.94539 0.94677 0.92636 0.93264 0.88901 0.89059 0.88894 0.85566 0.82835 0.83405 0.90354 0.90739 0.89399 0.86308 0.86587 0.94916 0.95017 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.36 -5.47 8.51 -56.11 -0.48 -5.95 16 3 C 0.04 0.45 6.28 37.16 0.23 0.68 16 4 C 0.13 1.53 5.80 -4.04 -0.02 1.51 16 5 N -0.99 -14.32 2.65 -115.66 -0.31 -14.63 16 6 C 0.20 2.45 6.19 -5.19 -0.03 2.42 16 7 C -0.04 -0.56 6.90 -35.62 -0.25 -0.80 16 8 C -0.19 -2.73 9.35 -39.70 -0.37 -3.10 16 9 C -0.20 -2.66 10.81 -39.71 -0.43 -3.09 16 10 C -0.02 -0.22 7.32 -35.63 -0.26 -0.49 16 11 C -0.07 -0.55 10.42 36.00 0.38 -0.17 16 12 O -0.17 -2.21 10.65 5.72 0.06 -2.15 16 13 S 2.59 49.63 5.37 -107.50 -0.58 49.06 16 14 O -0.93 -20.20 14.89 -65.98 -0.98 -21.18 16 15 O -0.97 -20.56 16.53 -57.54 -0.95 -21.51 16 16 C -0.60 -12.26 6.12 37.16 0.23 -12.03 16 17 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 22 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.09 1.19 7.61 -51.93 -0.40 0.79 16 32 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 34 H 0.13 1.60 6.82 -51.93 -0.35 1.24 16 35 H 0.15 2.22 7.75 -52.48 -0.41 1.81 16 36 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.12 2.29 6.25 -51.93 -0.32 1.97 16 41 H 0.12 2.20 8.14 -51.93 -0.42 1.78 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -36.51 380.66 -8.68 -45.19 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.93 Total: 1.40 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 0.04 Total: -26.31 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.43 Total: -40.79 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.35 Total: -50.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.58 Total: 49.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.51 -8.68 -45.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131740144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.495 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds