Wall clock time and date at job start Tue Mar 31 2020 16:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47243 * 65.00106 * 4 3 2 6 6 C 1.46498 * 120.00072 * 84.99392 * 5 4 3 7 7 C 1.50708 * 109.46785 * 85.00247 * 6 5 4 8 8 C 1.34516 * 125.78754 * 90.00046 * 7 6 5 9 9 C 1.41376 * 106.84089 * 180.02562 * 8 7 6 10 10 C 1.34515 * 106.84242 * 0.02562 * 9 8 7 11 11 C 1.50695 * 125.79319 * 179.73499 * 10 9 8 12 12 O 1.34298 * 125.79175 * 270.02201 * 7 6 5 13 13 S 1.65600 * 120.00129 * 265.00216 * 5 4 3 14 14 O 1.42099 * 104.27847 * 26.06423 * 13 5 4 15 15 O 1.42098 * 104.28124 * 153.92595 * 13 5 4 16 16 C 1.81403 * 104.44560 * 269.99722 * 13 5 4 17 17 C 1.53009 * 109.47047 * 179.97438 * 16 13 5 18 18 C 1.50695 * 109.47049 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00221 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47295 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46998 * 120.00050 * 22 20 18 25 25 H 1.48499 * 109.47126 * 239.99664 * 22 20 18 26 26 H 1.08994 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46846 * 300.00654 * 1 2 3 28 28 H 1.09009 * 109.46711 * 59.99690 * 1 2 3 29 29 H 1.08998 * 109.47030 * 59.99752 * 3 2 1 30 30 H 1.09002 * 109.46722 * 299.99876 * 3 2 1 31 31 H 1.09000 * 109.47553 * 305.00316 * 4 3 2 32 32 H 1.08999 * 109.47024 * 184.99842 * 4 3 2 33 33 H 1.09000 * 109.47212 * 325.00690 * 6 5 4 34 34 H 1.09003 * 109.47609 * 205.00347 * 6 5 4 35 35 H 1.08003 * 126.58045 * 0.04405 * 8 7 6 36 36 H 1.07995 * 126.58211 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47122 * 90.00090 * 11 10 9 38 38 H 1.09004 * 109.47299 * 210.00077 * 11 10 9 39 39 H 1.09003 * 109.47154 * 330.00412 * 11 10 9 40 40 H 1.08995 * 109.47320 * 299.99447 * 16 13 5 41 41 H 1.08997 * 109.47356 * 60.00117 * 16 13 5 42 42 H 1.09001 * 109.46672 * 300.00337 * 17 16 13 43 43 H 1.08997 * 109.46863 * 59.99918 * 17 16 13 44 44 H 0.96996 * 120.00110 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1828 1.3880 -2.4444 7 6 5.5702 1.9759 -2.4154 8 6 6.6747 1.4117 -2.9361 9 6 7.7457 2.2996 -2.6844 10 6 7.2318 3.3530 -2.0245 11 6 8.0049 4.5529 -1.5413 12 8 5.9135 3.1518 -1.8650 13 16 4.2424 -1.0694 -1.3165 14 8 3.4060 -1.6017 -0.2985 15 8 4.0371 -1.4033 -2.6824 16 6 5.9900 -1.2619 -0.8699 17 6 6.3621 -2.7459 -0.8942 18 6 7.8140 -2.9058 -0.5237 19 1 8.4118 -2.0360 -0.2943 20 6 8.3796 -4.1625 -0.4787 21 7 7.6518 -5.2216 -0.7586 22 14 10.1792 -4.3607 -0.0188 23 1 10.7714 -3.0258 0.2498 24 1 10.2890 -5.2045 1.1983 25 1 10.9076 -5.0098 -1.1384 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8509 0.5684 0.8426 32 1 3.9785 2.1764 0.0902 33 1 3.4476 2.1925 -2.4618 34 1 4.0680 0.7715 -3.3360 35 1 6.7322 0.4627 -3.4484 36 1 8.7783 2.1590 -2.9676 37 1 8.0145 5.3163 -2.3194 38 1 7.5314 4.9535 -0.6450 39 1 9.0282 4.2568 -1.3102 40 1 6.6094 -0.7200 -1.5843 41 1 6.1554 -0.8627 0.1308 42 1 5.7425 -3.2875 -0.1795 43 1 6.1965 -3.1456 -1.8946 44 1 8.0498 -6.1056 -0.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131740144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:33 Heat of formation + Delta-G solvation = -128.793298 kcal Electronic energy + Delta-G solvation = -27661.132287 eV Core-core repulsion = 23706.867814 eV Total energy + Delta-G solvation = -3954.264473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.51996 -39.09721 -38.15149 -37.24561 -36.85721 -35.91580 -34.11089 -33.24661 -33.04089 -30.97210 -28.65635 -27.60611 -27.01770 -25.36646 -23.77267 -23.19341 -22.57489 -21.17272 -19.86660 -19.16315 -18.42362 -17.88970 -17.66852 -17.12949 -16.99516 -16.84608 -16.59650 -16.40297 -15.83578 -15.61599 -15.25302 -15.03732 -14.63258 -14.41093 -13.95171 -13.90023 -13.80054 -13.69238 -13.68012 -13.32770 -13.10742 -13.06641 -12.95797 -12.94760 -12.78827 -12.66534 -12.62287 -12.35128 -12.28375 -12.10405 -11.88805 -11.75774 -11.17428 -10.82995 -10.66570 -10.46907 -10.17913 -9.26198 -8.27212 -6.41420 -0.69984 0.67039 1.38505 1.39670 1.52999 1.54991 1.83532 1.99179 2.36763 2.86617 3.03101 3.05721 3.24146 3.65593 3.70251 3.98841 4.03906 4.09022 4.11486 4.17272 4.23184 4.38712 4.47814 4.57203 4.58814 4.62078 4.63840 4.71896 4.76287 4.80376 4.89430 4.92222 4.93673 5.01776 5.10936 5.23883 5.24492 5.29074 5.52589 5.60591 5.66626 6.05419 6.20482 6.43898 6.71344 7.28517 8.85479 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.005085 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.699265 B = 5505.495334 C = 7986.038293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.034 3.966 4 C 0.117 3.883 5 N -0.983 5.983 6 C 0.195 3.805 7 C -0.044 4.044 8 C -0.217 4.217 9 C -0.230 4.230 10 C -0.011 4.011 11 C -0.071 4.071 12 O -0.171 6.171 13 S 2.609 3.391 14 O -0.958 6.958 15 O -0.993 6.993 16 C -0.597 4.597 17 C 0.027 3.973 18 C -0.537 4.537 19 H 0.070 0.930 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.973 3.027 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.006 0.994 43 H 0.004 0.996 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 23.861 -0.249 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.044 4.044 4 C -0.007 4.007 5 N -0.820 5.820 6 C 0.070 3.930 7 C -0.095 4.095 8 C -0.238 4.238 9 C -0.249 4.249 10 C -0.061 4.061 11 C -0.127 4.127 12 O -0.068 6.068 13 S 2.705 3.295 14 O -0.948 6.948 15 O -0.983 6.983 16 C -0.727 4.727 17 C -0.012 4.012 18 C -0.576 4.576 19 H 0.088 0.912 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.797 3.203 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.475 23.085 -0.328 24.267 hybrid contribution 1.370 -0.656 0.067 1.521 sum -6.105 22.429 -0.260 23.247 Atomic orbital electron populations 1.22864 0.80656 1.02826 1.00890 1.88210 1.20461 1.28236 1.95500 1.23195 0.93610 0.85266 1.02361 1.21651 0.93565 1.01217 0.84296 1.57582 1.81169 1.25285 1.17916 1.19928 0.89032 0.95889 0.88131 1.23036 0.98191 0.86438 1.01882 1.21955 0.93365 1.02239 1.06192 1.21834 1.01101 0.95573 1.06415 1.23164 0.81053 1.00095 1.01822 1.20487 0.98330 0.91258 1.02632 1.83926 1.25438 1.34960 1.62469 1.05012 0.77354 0.73456 0.73675 1.93578 1.63939 1.77238 1.60085 1.93462 1.85976 1.82779 1.36083 1.30535 1.23704 1.06347 1.12141 1.18764 0.98424 0.87751 0.96279 1.21482 0.95332 0.93407 1.47357 0.91154 1.26106 1.03666 0.95439 0.94819 1.70110 1.38591 0.99099 1.49523 0.85273 0.78190 0.78819 0.78038 1.18113 1.20118 1.20099 0.90626 0.92437 0.93128 0.89841 0.91346 0.90019 0.85674 0.84945 0.86295 0.84219 0.82478 0.88407 0.89472 0.88206 0.85232 0.85090 0.97610 0.97751 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.76 16 2 O -0.40 -11.89 8.51 -129.02 -1.10 -12.99 16 3 C 0.03 0.67 6.28 71.98 0.45 1.13 16 4 C 0.12 2.57 5.80 86.38 0.50 3.07 16 5 N -0.98 -27.08 2.65 -519.83 -1.38 -28.45 16 6 C 0.20 4.48 6.19 85.64 0.53 5.01 16 7 C -0.04 -1.10 6.90 24.84 0.17 -0.93 16 8 C -0.22 -6.17 9.35 22.19 0.21 -5.96 16 9 C -0.23 -5.75 10.81 22.19 0.24 -5.51 16 10 C -0.01 -0.23 7.32 24.83 0.18 -0.05 16 11 C -0.07 -0.85 10.42 71.23 0.74 -0.10 16 12 O -0.17 -3.94 10.65 -2.45 -0.03 -3.97 16 13 S 2.61 102.39 5.37 -56.49 -0.30 102.09 16 14 O -0.96 -42.68 14.89 -119.58 -1.78 -44.46 16 15 O -0.99 -43.61 16.53 -127.65 -2.11 -45.72 16 16 C -0.60 -25.26 6.12 71.99 0.44 -24.82 16 17 C 0.03 1.47 4.98 29.85 0.15 1.62 16 18 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 19 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 20 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 21 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 22 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.08 1.99 7.61 -2.39 -0.02 1.97 16 32 H 0.13 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.13 2.03 8.05 -2.39 -0.02 2.01 16 34 H 0.12 2.95 6.82 -2.39 -0.02 2.93 16 35 H 0.14 4.25 7.75 -2.91 -0.02 4.23 16 36 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.13 5.14 6.25 -2.39 -0.01 5.12 16 41 H 0.13 5.04 8.14 -2.39 -0.02 5.02 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.62 380.66 2.16 -79.47 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.98 Total: 20.74 kcal Atomic # 6 Polarization: -60.82 SS G_CDS: 5.56 Total: -55.26 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.09 Total: -86.27 kcal Atomic # 8 Polarization: -102.12 SS G_CDS: -5.01 Total: -107.13 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 102.39 SS G_CDS: -0.30 Total: 102.09 kcal Total: -81.62 2.16 -79.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131740144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.328 kcal (2) G-P(sol) polarization free energy of solvation -81.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds