Wall clock time and date at job start Tue Mar 31 2020 16:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46919 * 2 1 4 4 C 1.34517 * 125.78808 * 89.99893 * 3 2 1 5 5 C 1.41382 * 106.84094 * 180.02562 * 4 3 2 6 6 C 1.34519 * 106.83677 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.78445 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47099 * 339.99941 * 7 6 5 9 9 C 1.53004 * 109.47045 * 100.00132 * 7 6 5 10 10 O 1.42898 * 109.46885 * 54.99638 * 9 7 6 11 11 C 1.42910 * 113.99800 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46916 * 219.99737 * 7 6 5 13 13 S 1.65604 * 120.00055 * 145.00195 * 12 7 6 14 14 O 1.42097 * 104.27610 * 181.07294 * 13 12 7 15 15 O 1.42105 * 104.27250 * 308.93254 * 13 12 7 16 16 C 1.81397 * 104.44685 * 64.99891 * 13 12 7 17 17 C 1.52998 * 109.46979 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.47363 * 180.02562 * 17 16 13 19 19 H 1.07999 * 119.99450 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99935 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99529 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00080 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.46995 * 90.00167 * 22 20 18 24 24 H 1.48502 * 109.46845 * 209.99948 * 22 20 18 25 25 H 1.48495 * 109.47212 * 329.99695 * 22 20 18 26 26 O 1.34295 * 108.42259 * 0.26213 * 6 5 4 27 27 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47368 * 299.99866 * 1 2 3 29 29 H 1.08996 * 109.47555 * 59.99872 * 1 2 3 30 30 H 1.08994 * 109.46933 * 240.00298 * 2 1 3 31 31 H 1.09003 * 109.46869 * 119.99641 * 2 1 3 32 32 H 1.08000 * 126.57962 * 0.02562 * 4 3 2 33 33 H 1.07994 * 126.58348 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47142 * 174.99889 * 9 7 6 35 35 H 1.09001 * 109.46815 * 295.00119 * 9 7 6 36 36 H 1.09002 * 109.46740 * 59.99775 * 11 10 9 37 37 H 1.08998 * 109.46819 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.46966 * 300.00085 * 11 10 9 39 39 H 0.97003 * 120.00165 * 325.00637 * 12 7 6 40 40 H 1.09003 * 109.47582 * 300.00141 * 16 13 12 41 41 H 1.09000 * 109.46934 * 60.00604 * 16 13 12 42 42 H 1.09005 * 109.47445 * 300.00133 * 17 16 13 43 43 H 1.09005 * 109.47531 * 60.00210 * 17 16 13 44 44 H 0.96999 * 119.99474 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7396 3.4235 0.6321 6 6 2.7223 3.3771 -0.7122 7 6 3.1173 4.4988 -1.6378 8 1 3.0789 5.4453 -1.0987 9 6 4.5394 4.2608 -2.1497 10 8 4.6178 2.9685 -2.7545 11 6 5.9115 2.6445 -3.2680 12 7 2.1913 4.5449 -2.7721 13 16 1.7712 6.0012 -3.4394 14 8 0.8592 5.6620 -4.4749 15 8 1.3605 6.7892 -2.3304 16 6 3.3178 6.6421 -4.1378 17 6 3.0579 8.0011 -4.7907 18 6 4.3427 8.5334 -5.3715 19 1 5.2535 7.9598 -5.2833 20 6 4.3554 9.7530 -6.0144 21 7 5.4767 10.2176 -6.5208 22 14 2.7804 10.7460 -6.1650 23 1 2.6485 11.6459 -4.9912 24 1 2.8235 11.5570 -7.4083 25 1 1.6171 9.8244 -6.2154 26 8 2.2872 2.1638 -1.0894 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.1858 1.8540 2.1204 33 1 3.0366 4.2628 1.2433 34 1 4.7926 5.0228 -2.8867 35 1 5.2394 4.3148 -1.3160 36 1 6.6397 2.6650 -2.4571 37 1 5.8880 1.6484 -3.7098 38 1 6.1935 3.3730 -4.0281 39 1 1.8243 3.7224 -3.1323 40 1 4.0554 6.7561 -3.3434 41 1 3.6946 5.9451 -4.8863 42 1 2.3201 7.8875 -5.5850 43 1 2.6812 8.6979 -4.0419 44 1 5.4856 11.0755 -6.9735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173352054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:14 Heat of formation + Delta-G solvation = -112.975597 kcal Electronic energy + Delta-G solvation = -27085.575951 eV Core-core repulsion = 23131.997384 eV Total energy + Delta-G solvation = -3953.578566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69726 -38.35947 -36.78542 -35.74218 -35.54396 -34.25887 -34.00742 -32.88121 -31.54475 -29.94228 -28.04732 -26.25860 -26.00077 -24.18311 -22.48017 -21.77370 -21.27078 -20.14879 -19.09523 -17.95683 -17.52363 -16.82326 -16.54300 -16.39339 -15.76834 -15.65733 -15.54539 -15.19269 -14.84525 -14.67419 -14.33479 -13.72486 -13.44703 -13.32212 -13.13590 -12.89554 -12.85016 -12.76681 -12.61147 -12.40248 -11.93107 -11.81789 -11.77935 -11.68879 -11.55425 -11.44011 -11.29699 -11.28111 -11.20269 -10.48553 -10.24325 -9.97065 -9.88113 -9.77568 -9.55762 -9.27381 -8.69106 -8.40485 -6.19680 -4.21177 0.57423 1.61318 2.47682 2.69104 2.98645 3.24819 3.32485 3.36740 3.57134 4.05938 4.24949 4.33463 4.50589 4.58752 4.73930 4.79726 4.91067 4.95545 5.02389 5.04906 5.11976 5.19358 5.22059 5.28066 5.33606 5.40258 5.48564 5.50789 5.53942 5.59539 5.63567 5.76662 5.84409 5.91739 6.02034 6.22640 6.42731 6.76898 6.88324 6.96243 6.97555 7.15986 7.51170 8.32729 8.80709 9.40036 10.92598 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.003194 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.228902 B = 8763.821659 C = 9475.834955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.042 4.042 3 C -0.011 4.011 4 C -0.210 4.210 5 C -0.203 4.203 6 C 0.002 3.998 7 C 0.238 3.762 8 H 0.134 0.866 9 C 0.031 3.969 10 O -0.376 6.376 11 C 0.029 3.971 12 N -1.113 6.113 13 S 2.586 3.414 14 O -0.960 6.960 15 O -0.964 6.964 16 C -0.586 4.586 17 C -0.007 4.007 18 C -0.520 4.520 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 O -0.153 6.153 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.422 0.578 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 -19.907 14.338 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 C -0.062 4.062 4 C -0.230 4.230 5 C -0.223 4.223 6 C -0.051 4.051 7 C 0.130 3.870 8 H 0.152 0.848 9 C -0.047 4.047 10 O -0.295 6.295 11 C -0.068 4.068 12 N -0.870 5.870 13 S 2.683 3.317 14 O -0.950 6.950 15 O -0.953 6.953 16 C -0.719 4.719 17 C -0.046 4.046 18 C -0.559 4.559 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.695 3.305 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.186 1.186 26 O -0.049 6.049 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.256 0.744 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.113 -19.452 14.017 24.326 hybrid contribution 0.291 0.427 -0.176 0.545 sum -3.823 -19.025 13.841 23.835 Atomic orbital electron populations 1.21799 0.93988 1.02225 1.02832 1.20063 0.96320 0.87599 1.03951 1.22447 1.04288 0.95133 0.84327 1.21483 1.07831 0.94408 0.99248 1.21561 1.07605 0.99652 0.93450 1.21972 1.03849 0.85601 0.93641 1.19472 0.87586 0.95154 0.84834 0.84837 1.23385 0.96030 0.87023 0.98279 1.87937 1.31000 1.33190 1.77334 1.22779 0.84686 1.01362 0.97923 1.55761 1.60571 1.26561 1.44093 1.05768 0.78044 0.73215 0.74629 1.93573 1.60895 1.82073 1.58509 1.93561 1.80768 1.69144 1.51867 1.30439 1.18795 1.10585 1.12038 1.19421 1.00287 0.88665 0.96237 1.20822 0.93807 1.04638 1.36582 0.90430 1.24982 0.96255 0.97271 0.94575 1.69879 1.26146 1.20013 1.37263 0.86926 0.84376 0.80863 0.78304 1.19641 1.20760 1.18586 1.83958 1.64482 1.21877 1.34573 0.91721 0.92190 0.92115 0.90066 0.89063 0.83675 0.83217 0.90812 0.91437 0.94190 0.89687 0.93479 0.74353 0.85757 0.85192 0.94834 0.95266 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.69 16 2 C -0.04 -0.32 6.47 -27.88 -0.18 -0.50 16 3 C -0.01 -0.12 6.58 -35.62 -0.23 -0.36 16 4 C -0.21 -2.21 10.81 -39.70 -0.43 -2.64 16 5 C -0.20 -2.30 10.80 -39.70 -0.43 -2.73 16 6 C 0.00 0.02 5.70 -35.62 -0.20 -0.18 16 7 C 0.24 2.89 3.06 -69.08 -0.21 2.68 16 8 H 0.13 1.44 7.47 -51.93 -0.39 1.05 16 9 C 0.03 0.35 5.75 37.16 0.21 0.56 16 10 O -0.38 -4.58 10.03 -35.23 -0.35 -4.93 16 11 C 0.03 0.28 11.01 101.05 1.11 1.39 16 12 N -1.11 -15.17 5.30 -5.88 -0.03 -15.20 16 13 S 2.59 43.85 5.44 -107.50 -0.58 43.26 16 14 O -0.96 -19.14 18.08 -57.54 -1.04 -20.18 16 15 O -0.96 -18.45 17.39 -57.54 -1.00 -19.45 16 16 C -0.59 -10.30 5.04 37.16 0.19 -10.12 16 17 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 18 C -0.52 -14.13 9.66 -34.44 -0.33 -14.46 16 19 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 22 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 O -0.15 -2.00 10.26 5.74 0.06 -1.94 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.07 0.80 5.73 -51.93 -0.30 0.51 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.42 5.48 8.56 -34.47 -0.30 5.19 16 40 H 0.12 1.88 6.88 -51.92 -0.36 1.53 16 41 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 43 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -35.53 380.20 -8.23 -43.76 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.76 Total: 3.65 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -0.35 Total: -25.37 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.74 Total: -41.07 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -2.34 Total: -46.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 43.85 SS G_CDS: -0.58 Total: 43.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.53 -8.23 -43.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173352054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.216 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds