Wall clock time and date at job start Tue Mar 31 2020 16:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47259 * 2 1 4 4 C 1.34512 * 125.79226 * 89.99816 * 3 2 1 5 5 C 1.41379 * 106.84086 * 179.97438 * 4 3 2 6 6 C 1.34512 * 106.84332 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.79090 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47199 * 20.02070 * 7 6 5 9 9 C 1.53002 * 109.47101 * 260.02047 * 7 6 5 10 10 O 1.42901 * 109.47328 * 304.99978 * 9 7 6 11 11 C 1.42899 * 114.00149 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47276 * 140.02101 * 7 6 5 13 13 S 1.65603 * 120.00008 * 214.99884 * 12 7 6 14 14 O 1.42101 * 104.27678 * 181.07332 * 13 12 7 15 15 O 1.42103 * 104.27737 * 308.92567 * 13 12 7 16 16 C 1.81399 * 104.45050 * 65.00118 * 13 12 7 17 17 C 1.52996 * 109.47122 * 180.02562 * 16 13 12 18 18 C 1.50701 * 109.47180 * 180.02562 * 17 16 13 19 19 H 1.07999 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99932 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00007 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00316 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47177 * 90.00065 * 22 20 18 24 24 H 1.48497 * 109.47051 * 209.99962 * 22 20 18 25 25 H 1.48501 * 109.46850 * 329.99873 * 22 20 18 26 26 O 1.34301 * 108.41872 * 359.97438 * 6 5 4 27 27 H 1.09003 * 109.47272 * 60.00393 * 1 2 3 28 28 H 1.08998 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47211 * 299.99729 * 1 2 3 30 30 H 1.09004 * 109.46898 * 239.99575 * 2 1 3 31 31 H 1.09001 * 109.47168 * 120.00140 * 2 1 3 32 32 H 1.07997 * 126.57601 * 0.02562 * 4 3 2 33 33 H 1.08007 * 126.57604 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47208 * 64.99875 * 9 7 6 35 35 H 1.09002 * 109.47523 * 184.99969 * 9 7 6 36 36 H 1.09002 * 109.47310 * 300.00220 * 11 10 9 37 37 H 1.09000 * 109.46868 * 60.00179 * 11 10 9 38 38 H 1.09000 * 109.46797 * 179.97438 * 11 10 9 39 39 H 0.96998 * 119.99686 * 35.00419 * 12 7 6 40 40 H 1.09002 * 109.47010 * 299.99960 * 16 13 12 41 41 H 1.08996 * 109.46962 * 59.99678 * 16 13 12 42 42 H 1.09002 * 109.46998 * 299.99788 * 17 16 13 43 43 H 1.08996 * 109.47612 * 59.99896 * 17 16 13 44 44 H 0.96992 * 120.00360 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7409 3.4229 0.6319 6 6 2.7242 3.3763 -0.7123 7 6 3.1216 4.4971 -1.6380 8 1 3.7473 5.2087 -1.0993 9 6 1.8657 5.2066 -2.1483 10 8 0.9913 4.2514 -2.7526 11 6 -0.2187 4.8134 -3.2646 12 7 3.8693 3.9510 -2.7732 13 16 5.1112 4.8192 -3.4414 14 8 5.5728 4.0046 -4.5104 15 8 4.5499 6.1014 -3.6870 16 6 6.3578 4.9111 -2.1269 17 6 7.5696 5.6996 -2.6276 18 6 8.6056 5.7755 -1.5358 19 1 8.4182 5.3083 -0.5802 20 6 9.7926 6.4411 -1.7568 21 7 10.6969 6.5069 -0.8041 22 14 10.1170 7.2485 -3.4098 23 1 9.6242 8.6491 -3.3818 24 1 11.5761 7.2425 -3.6857 25 1 9.4085 6.4956 -4.4758 26 8 2.2944 2.1612 -1.0894 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1858 1.8539 2.1203 33 1 3.0382 4.2622 1.2433 34 1 1.3562 5.6886 -1.3139 35 1 2.1474 5.9586 -2.8854 36 1 -0.7712 5.2870 -2.4531 37 1 0.0195 5.5574 -4.0247 38 1 -0.8270 4.0245 -3.7069 39 1 3.6370 3.0809 -3.1335 40 1 5.9327 5.4123 -1.2574 41 1 6.6685 3.9038 -1.8498 42 1 7.9949 5.1988 -3.4973 43 1 7.2586 6.7069 -2.9044 44 1 11.5318 6.9755 -0.9594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173352066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:18 Heat of formation + Delta-G solvation = -113.310963 kcal Electronic energy + Delta-G solvation = -27032.730570 eV Core-core repulsion = 23079.137461 eV Total energy + Delta-G solvation = -3953.593109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67576 -38.34643 -36.76159 -35.73797 -35.55883 -34.23503 -33.97845 -32.85669 -31.50802 -29.95736 -28.01940 -26.24721 -26.00576 -24.18518 -22.42706 -21.79197 -21.28890 -20.12712 -19.04965 -17.94939 -17.47894 -16.88585 -16.41942 -16.31141 -15.90956 -15.73553 -15.50331 -15.05093 -14.87711 -14.64461 -14.31207 -13.81452 -13.38239 -13.30106 -13.13077 -12.87898 -12.82744 -12.80842 -12.64253 -12.34803 -11.91720 -11.80500 -11.77904 -11.69085 -11.53768 -11.44765 -11.28520 -11.25666 -11.21972 -10.47466 -10.20222 -9.96483 -9.88318 -9.79469 -9.54086 -9.24826 -8.67454 -8.38799 -6.17610 -4.19138 0.58547 1.62327 2.49997 2.71486 2.98595 3.25630 3.33284 3.37405 3.56741 4.06670 4.29100 4.34813 4.47924 4.60115 4.73166 4.81215 4.93225 4.95256 5.02027 5.04272 5.14115 5.20511 5.22298 5.24451 5.40923 5.45608 5.50005 5.50904 5.54272 5.55402 5.65774 5.78921 5.84326 5.93853 6.03895 6.24700 6.45180 6.78936 6.89487 6.96986 6.97313 7.17606 7.53128 8.35269 8.83582 9.41872 10.94746 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.003374 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.255777 B = 8295.824864 C = 9348.663818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.010 4.010 4 C -0.209 4.209 5 C -0.201 4.201 6 C -0.006 4.006 7 C 0.244 3.756 8 H 0.127 0.873 9 C 0.041 3.959 10 O -0.378 6.378 11 C 0.032 3.968 12 N -1.114 6.114 13 S 2.586 3.414 14 O -0.961 6.961 15 O -0.964 6.964 16 C -0.584 4.584 17 C -0.007 4.007 18 C -0.520 4.520 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 O -0.153 6.153 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.422 0.578 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.263 -8.801 2.104 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.061 4.061 4 C -0.229 4.229 5 C -0.221 4.221 6 C -0.058 4.058 7 C 0.136 3.864 8 H 0.144 0.856 9 C -0.038 4.038 10 O -0.296 6.296 11 C -0.065 4.065 12 N -0.870 5.870 13 S 2.684 3.316 14 O -0.951 6.951 15 O -0.954 6.954 16 C -0.717 4.717 17 C -0.046 4.046 18 C -0.559 4.559 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.695 3.305 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.186 1.186 26 O -0.049 6.049 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.256 0.744 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.050 -8.501 0.987 24.587 hybrid contribution 0.316 0.338 0.086 0.471 sum -22.734 -8.163 1.073 24.179 Atomic orbital electron populations 1.21777 0.94034 1.02123 1.02680 1.20067 0.96280 0.87632 1.04057 1.22442 1.04198 0.95142 0.84318 1.21491 1.07662 0.94401 0.99299 1.21582 1.07394 0.99683 0.93420 1.22068 1.04015 0.86062 0.93688 1.19359 0.92352 0.90276 0.84451 0.85594 1.23226 0.90430 0.91942 0.98202 1.87925 1.30476 1.33803 1.77433 1.22730 0.86624 0.99396 0.97766 1.55786 1.50177 1.35155 1.45892 1.05785 0.75059 0.73956 0.76819 1.93572 1.81247 1.68654 1.51643 1.93548 1.76227 1.41311 1.84324 1.30324 1.14082 1.10720 1.16581 1.19413 0.91857 0.94599 0.98725 1.20843 0.99595 1.36006 0.99436 0.90362 1.24983 0.95779 0.95533 0.96791 1.69878 1.07966 1.42608 1.32862 0.86928 0.78036 0.80636 0.84878 1.19656 1.20751 1.18595 1.83958 1.64479 1.21870 1.34557 0.92167 0.91796 0.92289 0.90059 0.88988 0.83637 0.83156 0.91923 0.90180 0.94260 0.93911 0.89805 0.74350 0.85778 0.85234 0.94878 0.95284 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.04 -0.33 6.47 -27.89 -0.18 -0.51 16 3 C -0.01 -0.11 6.57 -35.63 -0.23 -0.35 16 4 C -0.21 -2.25 10.81 -39.70 -0.43 -2.68 16 5 C -0.20 -2.29 10.80 -39.70 -0.43 -2.71 16 6 C -0.01 -0.08 5.70 -35.63 -0.20 -0.28 16 7 C 0.24 2.94 2.93 -69.08 -0.20 2.74 16 8 H 0.13 1.26 7.14 -51.93 -0.37 0.89 16 9 C 0.04 0.47 5.76 37.16 0.21 0.68 16 10 O -0.38 -4.64 10.03 -35.23 -0.35 -5.00 16 11 C 0.03 0.29 11.01 101.05 1.11 1.40 16 12 N -1.11 -15.06 5.30 -5.88 -0.03 -15.10 16 13 S 2.59 43.52 5.38 -107.50 -0.58 42.94 16 14 O -0.96 -19.11 18.08 -57.54 -1.04 -20.16 16 15 O -0.96 -17.88 17.05 -57.54 -0.98 -18.87 16 16 C -0.58 -10.47 5.90 37.16 0.22 -10.25 16 17 C -0.01 -0.15 4.05 -27.88 -0.11 -0.27 16 18 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 22 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 26 O -0.15 -1.99 10.26 5.71 0.06 -1.93 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.98 7.36 -51.93 -0.38 0.60 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.42 5.46 8.56 -34.47 -0.30 5.16 16 40 H 0.12 1.93 7.44 -51.92 -0.39 1.54 16 41 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 42 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 43 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -35.62 382.41 -8.23 -43.85 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.86 Total: 3.59 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -0.31 Total: -25.61 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.74 Total: -41.23 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.32 Total: -45.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 43.52 SS G_CDS: -0.58 Total: 42.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.62 -8.23 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173352066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.465 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds