Wall clock time and date at job start Tue Mar 31 2020 15:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 117.00164 * 2 1 4 4 O 1.20823 * 119.99623 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99845 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47102 * 180.02562 * 5 3 2 7 7 C 1.36786 * 119.99997 * 274.12290 * 6 5 3 8 8 H 1.08008 * 119.99944 * 132.26409 * 7 6 5 9 9 C 1.39066 * 120.00038 * 312.26924 * 7 6 5 10 10 N 1.31356 * 119.99885 * 2.96437 * 9 7 6 11 11 Si 1.86801 * 120.00176 * 182.96783 * 9 7 6 12 12 H 1.48506 * 109.47041 * 89.99741 * 11 9 7 13 13 H 1.48489 * 109.47361 * 209.99649 * 11 9 7 14 14 H 1.48499 * 109.46911 * 329.99920 * 11 9 7 15 15 C 1.34778 * 119.99986 * 94.12058 * 6 5 3 16 16 O 1.21706 * 120.00234 * 4.03535 * 15 6 5 17 17 C 1.46815 * 120.00194 * 184.03737 * 15 6 5 18 18 C 1.35959 * 125.14654 * 174.25371 * 17 15 6 19 19 C 1.46208 * 106.06926 * 179.97438 * 18 17 15 20 20 C 1.39722 * 134.17467 * 179.97438 * 19 18 17 21 21 C 1.36627 * 119.70812 * 180.02562 * 20 19 18 22 22 C 1.50698 * 119.77990 * 180.02562 * 21 20 19 23 23 C 1.38838 * 120.43955 * 359.69347 * 21 20 19 24 24 C 1.50699 * 119.62518 * 180.32155 * 23 21 20 25 25 C 1.37815 * 120.74614 * 0.60219 * 23 21 20 26 26 C 1.39007 * 119.86055 * 359.41792 * 25 23 21 27 27 O 1.34742 * 133.22630 * 180.25246 * 26 25 23 28 28 H 1.09003 * 109.46548 * 59.99597 * 1 2 3 29 29 H 1.08992 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47013 * 299.99972 * 1 2 3 31 31 H 1.08995 * 109.47405 * 59.99968 * 5 3 2 32 32 H 1.09001 * 109.47105 * 300.00002 * 5 3 2 33 33 H 0.97003 * 119.99698 * 180.02562 * 10 9 7 34 34 H 1.07995 * 126.96278 * 359.96627 * 18 17 15 35 35 H 1.07999 * 120.14939 * 0.02562 * 20 19 18 36 36 H 1.09005 * 109.47195 * 89.99541 * 22 21 20 37 37 H 1.09001 * 109.47166 * 209.99874 * 22 21 20 38 38 H 1.08998 * 109.47210 * 329.99767 * 22 21 20 39 39 H 1.09005 * 109.46937 * 270.28114 * 24 23 21 40 40 H 1.08991 * 109.47444 * 30.28015 * 24 23 21 41 41 H 1.09003 * 109.46995 * 150.28430 * 24 23 21 42 42 H 1.08005 * 120.06968 * 179.69114 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6796 0.0011 7 6 4.0946 3.3599 -1.1802 8 1 3.6531 4.3402 -1.2831 9 6 4.7776 2.7893 -2.2488 10 7 5.2642 1.5737 -2.1434 11 14 5.0032 3.7514 -3.8340 12 1 6.2658 4.5302 -3.7649 13 1 5.0648 2.8095 -4.9803 14 1 3.8585 4.6795 -4.0169 15 6 4.2530 3.3017 1.1655 16 8 4.2241 2.6777 2.2100 17 6 4.5830 4.7323 1.1741 18 6 4.7645 5.4870 2.2903 19 6 5.0734 6.8366 1.8205 20 6 5.3568 8.0480 2.4565 21 6 5.6093 9.1628 1.7082 22 6 5.9158 10.4700 2.3926 23 6 5.5922 9.0979 0.3214 24 6 5.8805 10.3373 -0.4860 25 6 5.3089 7.9142 -0.3250 26 6 5.0485 6.7666 0.4149 27 8 4.7527 5.4968 0.0750 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9565 0.7805 -0.8891 32 1 3.9558 0.7808 0.8908 33 1 5.7409 1.1758 -2.8886 34 1 4.6944 5.1566 3.3160 35 1 5.3762 8.1028 3.5349 36 1 6.9910 10.5539 2.5510 37 1 5.5750 11.2958 1.7680 38 1 5.4031 10.5059 3.3538 39 1 4.9498 10.8724 -0.6749 40 1 6.5637 10.9810 0.0679 41 1 6.3363 10.0548 -1.4349 42 1 5.2937 7.8772 -1.4043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173619226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:48 Heat of formation + Delta-G solvation = -86.553987 kcal Electronic energy + Delta-G solvation = -28390.703610 eV Core-core repulsion = 24302.826820 eV Total energy + Delta-G solvation = -4087.876791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88007 -39.81833 -38.68555 -38.05112 -35.84182 -34.95181 -32.95616 -32.04763 -31.75355 -30.63567 -28.91500 -26.98103 -26.87534 -25.99759 -24.82321 -22.59791 -21.45901 -20.88271 -20.34339 -19.44078 -18.14284 -16.98623 -16.81135 -16.49514 -15.75911 -15.64957 -15.48894 -15.04794 -14.95500 -14.65034 -14.37536 -14.08515 -13.78108 -13.57233 -13.29642 -12.85936 -12.83711 -12.64607 -12.59775 -12.43058 -12.17023 -12.08938 -11.78332 -11.48392 -11.39685 -11.31377 -11.18661 -11.14340 -10.75513 -10.59654 -10.46539 -10.25418 -9.75766 -9.61963 -9.45026 -9.06665 -8.08229 -7.90738 -7.61260 -6.56058 -4.40850 1.05087 1.62885 2.37921 3.04075 3.07897 3.12427 3.14170 3.22030 3.32352 3.88592 3.94849 4.17647 4.36473 4.83764 4.85480 4.93009 5.06254 5.16258 5.29178 5.44104 5.45688 5.50553 5.53892 5.57579 5.60549 5.60783 5.69765 5.80632 5.88444 5.89604 5.93533 6.07952 6.20884 6.25131 6.50303 6.58291 6.72122 6.79637 6.81750 6.96011 6.99903 7.38183 7.52789 7.66312 8.18531 8.54367 8.81821 9.04879 9.49624 10.44467 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003969 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.272312 B = 7052.610132 C = 8342.113136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.447 3.553 4 O -0.506 6.506 5 C 0.108 3.892 6 N -0.406 5.406 7 C -0.324 4.324 8 H 0.103 0.897 9 C 0.049 3.951 10 N -0.871 5.871 11 Si 0.927 3.073 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.266 1.266 15 C 0.551 3.449 16 O -0.575 6.575 17 C 0.046 3.954 18 C -0.170 4.170 19 C -0.134 4.134 20 C -0.068 4.068 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.069 4.069 24 C -0.111 4.111 25 C -0.105 4.105 26 C 0.050 3.950 27 O -0.143 6.143 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.165 0.835 32 H 0.104 0.896 33 H 0.277 0.723 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 9.373 2.378 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.289 3.711 4 O -0.393 6.393 5 C -0.017 4.017 6 N -0.122 5.122 7 C -0.451 4.451 8 H 0.120 0.880 9 C -0.156 4.156 10 N -0.508 5.508 11 Si 0.753 3.247 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.190 1.190 15 C 0.340 3.660 16 O -0.460 6.460 17 C -0.005 4.005 18 C -0.191 4.191 19 C -0.135 4.135 20 C -0.086 4.086 21 C -0.113 4.113 22 C -0.164 4.164 23 C -0.069 4.069 24 C -0.167 4.167 25 C -0.123 4.123 26 C 0.001 3.999 27 O -0.042 6.042 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.416 9.082 2.441 9.414 hybrid contribution -0.220 0.331 -0.750 0.849 sum -0.637 9.413 1.691 9.585 Atomic orbital electron populations 1.23093 0.78065 1.02640 1.01988 1.86545 1.22204 1.34698 1.84934 1.25190 0.93437 0.80888 0.71539 1.90588 1.67050 1.36406 1.45221 1.21483 0.84532 0.87126 1.08509 1.42906 1.54757 1.09081 1.05452 1.19680 1.34020 1.02266 0.89181 0.87994 1.25619 0.93727 0.95913 1.00387 1.69402 1.34653 1.13533 1.33246 0.85895 0.79463 0.79483 0.79875 1.19636 1.20529 1.18989 1.17168 0.80757 0.83365 0.84683 1.90732 1.58558 1.64336 1.32410 1.22157 1.02044 0.92314 0.84028 1.22484 1.06924 0.90503 0.99168 1.19895 1.05912 0.94491 0.93201 1.20085 0.99007 0.90135 0.99355 1.19233 1.03609 0.95645 0.92850 1.20734 1.01578 0.94046 1.00035 1.19407 0.99991 0.94372 0.93135 1.20786 1.01824 0.94764 0.99342 1.19750 1.04322 0.88634 0.99597 1.20003 1.00731 0.85821 0.93351 1.84705 1.70754 1.16143 1.32637 0.92451 0.88862 0.92561 0.81845 0.87765 0.91172 0.82188 0.85861 0.91544 0.91523 0.91822 0.91158 0.91234 0.91465 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.09 10.57 -39.25 -0.41 -7.51 16 3 C 0.45 10.22 8.00 36.01 0.29 10.51 16 4 O -0.51 -12.81 16.11 -18.75 -0.30 -13.11 16 5 C 0.11 2.56 5.72 -5.20 -0.03 2.53 16 6 N -0.41 -10.45 2.01 -117.55 -0.24 -10.69 16 7 C -0.32 -8.41 7.57 -15.03 -0.11 -8.52 16 8 H 0.10 2.70 6.26 -52.48 -0.33 2.38 16 9 C 0.05 1.23 5.39 -17.45 -0.09 1.13 16 10 N -0.87 -21.84 10.88 55.50 0.60 -21.24 16 11 Si 0.93 19.66 29.55 -169.99 -5.02 14.63 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 C 0.55 14.12 7.60 -12.79 -0.10 14.02 16 16 O -0.57 -15.15 16.33 5.18 0.08 -15.07 16 17 C 0.05 1.06 6.78 -36.93 -0.25 0.81 16 18 C -0.17 -3.44 10.81 -37.20 -0.40 -3.84 16 19 C -0.13 -2.48 6.38 -105.19 -0.67 -3.15 16 20 C -0.07 -1.01 9.68 -39.61 -0.38 -1.40 16 21 C -0.11 -1.50 5.85 -104.98 -0.61 -2.11 16 22 C -0.11 -1.01 9.15 36.00 0.33 -0.68 16 23 C -0.07 -0.94 5.88 -104.56 -0.61 -1.55 16 24 C -0.11 -1.08 9.15 36.01 0.33 -0.75 16 25 C -0.10 -1.71 9.70 -39.45 -0.38 -2.09 16 26 C 0.05 0.99 7.41 -38.35 -0.28 0.70 16 27 O -0.14 -3.28 7.49 2.69 0.02 -3.25 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.83 8.13 -51.94 -0.42 0.41 16 31 H 0.17 3.96 5.32 -51.93 -0.28 3.68 16 32 H 0.10 2.37 7.25 -51.93 -0.38 1.99 16 33 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.16 2.94 8.06 -52.49 -0.42 2.51 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 38 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.57 6.68 -51.93 -0.35 0.22 16 41 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -30.82 361.43 -6.78 -37.59 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.03 Total: 5.97 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.92 Total: 7.23 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.37 Total: -31.93 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.61 Total: -38.94 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.82 -6.78 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173619226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.960 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds