Wall clock time and date at job start Tue Mar 31 2020 15:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 117.00164 * 2 1 4 4 O 1.20823 * 119.99623 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99845 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47102 * 180.02562 * 5 3 2 7 7 C 1.36786 * 119.99997 * 274.12290 * 6 5 3 8 8 H 1.08008 * 119.99944 * 132.26409 * 7 6 5 9 9 C 1.39066 * 120.00038 * 312.26924 * 7 6 5 10 10 N 1.31356 * 119.99885 * 2.96437 * 9 7 6 11 11 Si 1.86801 * 120.00176 * 182.96783 * 9 7 6 12 12 H 1.48506 * 109.47041 * 89.99741 * 11 9 7 13 13 H 1.48489 * 109.47361 * 209.99649 * 11 9 7 14 14 H 1.48499 * 109.46911 * 329.99920 * 11 9 7 15 15 C 1.34778 * 119.99986 * 94.12058 * 6 5 3 16 16 O 1.21706 * 120.00234 * 4.03535 * 15 6 5 17 17 C 1.46815 * 120.00194 * 184.03737 * 15 6 5 18 18 C 1.35959 * 125.14654 * 174.25371 * 17 15 6 19 19 C 1.46208 * 106.06926 * 179.97438 * 18 17 15 20 20 C 1.39722 * 134.17467 * 179.97438 * 19 18 17 21 21 C 1.36627 * 119.70812 * 180.02562 * 20 19 18 22 22 C 1.50698 * 119.77990 * 180.02562 * 21 20 19 23 23 C 1.38838 * 120.43955 * 359.69347 * 21 20 19 24 24 C 1.50699 * 119.62518 * 180.32155 * 23 21 20 25 25 C 1.37815 * 120.74614 * 0.60219 * 23 21 20 26 26 C 1.39007 * 119.86055 * 359.41792 * 25 23 21 27 27 O 1.34742 * 133.22630 * 180.25246 * 26 25 23 28 28 H 1.09003 * 109.46548 * 59.99597 * 1 2 3 29 29 H 1.08992 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47013 * 299.99972 * 1 2 3 31 31 H 1.08995 * 109.47405 * 59.99968 * 5 3 2 32 32 H 1.09001 * 109.47105 * 300.00002 * 5 3 2 33 33 H 0.97003 * 119.99698 * 180.02562 * 10 9 7 34 34 H 1.07995 * 126.96278 * 359.96627 * 18 17 15 35 35 H 1.07999 * 120.14939 * 0.02562 * 20 19 18 36 36 H 1.09005 * 109.47195 * 89.99541 * 22 21 20 37 37 H 1.09001 * 109.47166 * 209.99874 * 22 21 20 38 38 H 1.08998 * 109.47210 * 329.99767 * 22 21 20 39 39 H 1.09005 * 109.46937 * 270.28114 * 24 23 21 40 40 H 1.08991 * 109.47444 * 30.28015 * 24 23 21 41 41 H 1.09003 * 109.46995 * 150.28430 * 24 23 21 42 42 H 1.08005 * 120.06968 * 179.69114 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6796 0.0011 7 6 4.0946 3.3599 -1.1802 8 1 3.6531 4.3402 -1.2831 9 6 4.7776 2.7893 -2.2488 10 7 5.2642 1.5737 -2.1434 11 14 5.0032 3.7514 -3.8340 12 1 6.2658 4.5302 -3.7649 13 1 5.0648 2.8095 -4.9803 14 1 3.8585 4.6795 -4.0169 15 6 4.2530 3.3017 1.1655 16 8 4.2241 2.6777 2.2100 17 6 4.5830 4.7323 1.1741 18 6 4.7645 5.4870 2.2903 19 6 5.0734 6.8366 1.8205 20 6 5.3568 8.0480 2.4565 21 6 5.6093 9.1628 1.7082 22 6 5.9158 10.4700 2.3926 23 6 5.5922 9.0979 0.3214 24 6 5.8805 10.3373 -0.4860 25 6 5.3089 7.9142 -0.3250 26 6 5.0485 6.7666 0.4149 27 8 4.7527 5.4968 0.0750 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9565 0.7805 -0.8891 32 1 3.9558 0.7808 0.8908 33 1 5.7409 1.1758 -2.8886 34 1 4.6944 5.1566 3.3160 35 1 5.3762 8.1028 3.5349 36 1 6.9910 10.5539 2.5510 37 1 5.5750 11.2958 1.7680 38 1 5.4031 10.5059 3.3538 39 1 4.9498 10.8724 -0.6749 40 1 6.5637 10.9810 0.0679 41 1 6.3363 10.0548 -1.4349 42 1 5.2937 7.8772 -1.4043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173619226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:47 Heat of formation + Delta-G solvation = -103.109631 kcal Electronic energy + Delta-G solvation = -28391.421517 eV Core-core repulsion = 24302.826820 eV Total energy + Delta-G solvation = -4088.594697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.37895 -41.59504 -40.34046 -39.44042 -37.60581 -36.84338 -34.28073 -33.70624 -33.14271 -32.01997 -30.57918 -28.29496 -27.94597 -27.52045 -26.52913 -23.95481 -22.87501 -22.28961 -22.02320 -21.20292 -19.83936 -18.76215 -18.42489 -18.00751 -17.39689 -17.24547 -17.21341 -16.64456 -16.58778 -16.09058 -15.84854 -15.44531 -15.05536 -14.90321 -14.81804 -14.44931 -14.31714 -14.01068 -13.84347 -13.54206 -13.52302 -13.21056 -13.12512 -13.01309 -12.94570 -12.91159 -12.57386 -12.32948 -12.25486 -12.14451 -11.82141 -11.80745 -11.61791 -11.37425 -11.04667 -10.96674 -9.78273 -9.32170 -9.08096 -8.45267 -6.37337 -0.36810 0.38042 0.84179 1.21550 1.37780 1.38823 1.48663 1.60775 1.75979 2.17466 2.34280 2.66198 2.67030 2.96658 3.55231 3.69741 3.89361 4.01804 4.04237 4.12524 4.20951 4.27304 4.30448 4.31087 4.44074 4.52729 4.63105 4.71782 4.79281 4.86440 4.88066 4.89229 4.93912 5.10037 5.22961 5.25929 5.29854 5.36195 5.41295 5.44841 5.60677 5.63569 5.81063 6.17475 6.26202 6.77149 6.88504 7.12785 7.57164 8.56043 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003969 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.272312 B = 7052.610132 C = 8342.113136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.537 6.537 5 C 0.106 3.894 6 N -0.417 5.417 7 C -0.340 4.340 8 H 0.088 0.912 9 C 0.014 3.986 10 N -0.890 5.890 11 Si 0.985 3.015 12 H -0.267 1.267 13 H -0.266 1.266 14 H -0.267 1.267 15 C 0.540 3.460 16 O -0.599 6.599 17 C -0.006 4.006 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.068 4.068 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.051 4.051 24 C -0.111 4.111 25 C -0.129 4.129 26 C 0.022 3.978 27 O -0.169 6.169 28 H 0.057 0.943 29 H 0.141 0.859 30 H 0.056 0.944 31 H 0.160 0.840 32 H 0.106 0.894 33 H 0.283 0.717 34 H 0.173 0.827 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 12.389 2.246 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.297 3.703 4 O -0.426 6.426 5 C -0.019 4.019 6 N -0.133 5.133 7 C -0.468 4.468 8 H 0.105 0.895 9 C -0.189 4.189 10 N -0.527 5.527 11 Si 0.807 3.193 12 H -0.193 1.193 13 H -0.191 1.191 14 H -0.191 1.191 15 C 0.330 3.670 16 O -0.487 6.487 17 C -0.056 4.056 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.086 4.086 21 C -0.107 4.107 22 C -0.162 4.162 23 C -0.051 4.051 24 C -0.168 4.168 25 C -0.147 4.147 26 C -0.026 4.026 27 O -0.070 6.070 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.176 0.824 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.042 12.071 2.307 12.290 hybrid contribution -0.373 -0.445 -0.628 0.856 sum -0.331 11.626 1.679 11.751 Atomic orbital electron populations 1.23539 0.75115 1.05789 1.02070 1.86508 1.24951 1.32432 1.84087 1.24893 0.93135 0.81406 0.70905 1.90564 1.67594 1.37613 1.46837 1.21443 0.85624 0.86593 1.08212 1.43065 1.55007 1.09623 1.05572 1.19648 1.35169 1.02203 0.89767 0.89499 1.26346 0.93070 0.96708 1.02826 1.69466 1.34750 1.14235 1.34269 0.85051 0.79216 0.78417 0.76584 1.19255 1.19064 1.19112 1.17557 0.80394 0.84612 0.84444 1.90665 1.59871 1.65373 1.32825 1.21863 1.06457 0.91940 0.85342 1.22787 1.03913 0.91295 0.98904 1.20061 1.07803 0.94923 0.92913 1.20490 0.98028 0.89132 1.00981 1.19805 1.01189 0.96904 0.92830 1.20851 1.02897 0.91867 1.00621 1.20005 0.96500 0.94640 0.93973 1.20936 1.03354 0.93092 0.99372 1.20110 1.05735 0.88630 1.00236 1.20602 1.01825 0.85449 0.94773 1.84577 1.71937 1.17612 1.32845 0.92454 0.84142 0.92499 0.82384 0.87629 0.90590 0.80955 0.83172 0.89850 0.89495 0.90519 0.89354 0.88705 0.90796 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.00 16 2 O -0.36 -14.15 10.57 -51.40 -0.54 -14.70 16 3 C 0.45 21.54 8.00 71.24 0.57 22.11 16 4 O -0.54 -28.35 16.11 21.97 0.35 -27.99 16 5 C 0.11 5.28 5.72 85.63 0.49 5.77 16 6 N -0.42 -22.82 2.01 -644.02 -1.30 -24.12 16 7 C -0.34 -18.67 7.57 84.12 0.64 -18.03 16 8 H 0.09 4.94 6.26 -2.91 -0.02 4.93 16 9 C 0.01 0.72 5.39 84.96 0.46 1.18 16 10 N -0.89 -45.92 10.88 21.68 0.24 -45.69 16 11 Si 0.99 41.01 29.55 68.60 2.03 43.04 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 14 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 15 C 0.54 29.54 7.60 86.49 0.66 30.20 16 16 O -0.60 -33.57 16.33 -4.37 -0.07 -33.64 16 17 C -0.01 -0.29 6.78 23.99 0.16 -0.13 16 18 C -0.15 -6.25 10.81 23.81 0.26 -5.99 16 19 C -0.16 -5.83 6.38 -20.24 -0.13 -5.96 16 20 C -0.07 -1.90 9.68 22.25 0.22 -1.69 16 21 C -0.11 -2.46 5.85 -20.10 -0.12 -2.58 16 22 C -0.11 -1.43 9.15 71.24 0.65 -0.78 16 23 C -0.05 -1.24 5.88 -19.82 -0.12 -1.35 16 24 C -0.11 -1.68 9.15 71.24 0.65 -1.03 16 25 C -0.13 -4.14 9.70 22.35 0.22 -3.92 16 26 C 0.02 0.89 7.41 23.07 0.17 1.06 16 27 O -0.17 -8.24 7.49 -13.28 -0.10 -8.34 16 28 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.16 8.05 5.32 -2.39 -0.01 8.04 16 32 H 0.11 5.12 7.25 -2.39 -0.02 5.10 16 33 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.17 6.55 8.06 -2.91 -0.02 6.52 16 35 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.09 0.87 6.69 -2.39 -0.02 0.86 16 38 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 39 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.09 1.01 6.68 -2.39 -0.02 0.99 16 41 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -72.04 361.43 7.64 -64.40 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 1.06 Total: 26.18 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 5.97 Total: 20.87 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.06 Total: -69.81 kcal Atomic # 8 Polarization: -84.31 SS G_CDS: -0.36 Total: -84.67 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -72.04 7.64 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173619226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.713 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds