Wall clock time and date at job start Tue Mar 31 2020 17:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.46933 * 2 1 4 4 C 1.53004 * 109.46768 * 240.00704 * 2 1 3 5 5 N 1.46497 * 109.47214 * 59.99830 * 4 2 1 6 6 C 1.34779 * 119.99603 * 180.02562 * 5 4 2 7 7 O 1.21593 * 120.00398 * 359.97438 * 6 5 4 8 8 C 1.47538 * 119.99815 * 179.72773 * 6 5 4 9 9 C 1.39669 * 120.19356 * 0.26645 * 8 6 5 10 10 C 1.37827 * 119.91359 * 179.97438 * 9 8 6 11 11 C 1.38574 * 120.32604 * 0.02562 * 10 9 8 12 12 C 1.38024 * 120.40261 * 359.97438 * 11 10 9 13 13 C 1.38829 * 120.06892 * 359.70981 * 12 11 10 14 14 O 1.35527 * 120.16115 * 180.27720 * 13 12 11 15 15 C 1.34815 * 116.99844 * 354.39419 * 14 13 12 16 16 H 1.08004 * 119.99886 * 5.06084 * 15 14 13 17 17 C 1.38700 * 119.99941 * 185.06574 * 15 14 13 18 18 N 1.31516 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47172 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46981 * 119.99941 * 19 17 15 22 22 H 1.48499 * 109.47060 * 240.00042 * 19 17 15 23 23 C 1.50698 * 109.47345 * 120.00641 * 2 1 3 24 24 C 1.34509 * 125.78819 * 269.71657 * 23 2 1 25 25 C 1.41379 * 106.84176 * 179.88786 * 24 23 2 26 26 C 1.34512 * 106.84057 * 0.37399 * 25 24 23 27 27 O 1.34299 * 125.79141 * 90.01885 * 23 2 1 28 28 H 1.09000 * 109.46692 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46715 * 299.99639 * 1 2 3 30 30 H 1.08997 * 109.47240 * 59.99797 * 1 2 3 31 31 H 0.96697 * 113.99499 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46759 * 299.99929 * 4 2 1 33 33 H 1.08992 * 109.46619 * 180.02562 * 4 2 1 34 34 H 0.97000 * 120.00131 * 359.97438 * 5 4 2 35 35 H 1.07996 * 120.04212 * 359.95928 * 9 8 6 36 36 H 1.07998 * 119.83585 * 180.02562 * 10 9 8 37 37 H 1.08009 * 119.79802 * 179.97438 * 11 10 9 38 38 H 1.07994 * 119.96259 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00113 * 179.97438 * 18 17 15 40 40 H 1.08009 * 126.57859 * 0.02562 * 24 23 2 41 41 H 1.08003 * 126.57782 * 180.16150 * 25 24 23 42 42 H 1.08001 * 125.79002 * 179.75194 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.5516 -0.0304 -2.4454 6 6 1.8768 -0.4911 -3.6696 7 8 2.5758 -1.4797 -3.7813 8 6 1.3800 0.2009 -4.8742 9 6 0.5771 1.3371 -4.7506 10 6 0.1166 1.9794 -5.8798 11 6 0.4457 1.5033 -7.1388 12 6 1.2383 0.3817 -7.2763 13 6 1.7166 -0.2743 -6.1502 14 8 2.4995 -1.3726 -6.2831 15 6 2.6826 -1.8462 -7.5320 16 1 2.2826 -1.3070 -8.3780 17 6 3.3845 -3.0259 -7.7303 18 7 3.8719 -3.6822 -6.7000 19 14 3.6375 -3.6826 -9.4606 20 1 2.9965 -2.7654 -10.4368 21 1 5.0917 -3.7728 -9.7481 22 1 3.0261 -5.0312 -9.5726 23 6 2.0325 -0.7105 1.2304 24 6 2.2998 -0.1356 2.4167 25 6 2.7409 -1.1644 3.2802 26 6 2.7247 -2.3051 2.5676 27 8 2.2946 -2.0242 1.3267 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.9703 1.4236 0.0004 32 1 1.6766 -1.7488 -1.2494 33 1 3.1299 -0.7215 -1.2491 34 1 0.9936 0.7580 -2.3563 35 1 0.3172 1.7117 -3.7716 36 1 -0.5038 2.8581 -5.7828 37 1 0.0799 2.0131 -8.0180 38 1 1.4901 0.0166 -8.2610 39 1 4.3624 -4.5074 -6.8386 40 1 2.1951 0.9108 2.6629 41 1 3.0376 -1.0548 4.3129 42 1 3.0095 -3.2813 2.9315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173691686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:52 Heat of formation + Delta-G solvation = -87.357485 kcal Electronic energy + Delta-G solvation = -27859.062071 eV Core-core repulsion = 23771.150438 eV Total energy + Delta-G solvation = -4087.911633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.62347 -41.33761 -40.11497 -38.88920 -38.01465 -35.43385 -34.32277 -33.88679 -33.12039 -31.89128 -30.56388 -29.58169 -27.98134 -27.25911 -24.71769 -23.48915 -22.91542 -22.55242 -21.57714 -21.11563 -19.85622 -19.42127 -19.09872 -18.01793 -17.37440 -17.17207 -16.71073 -16.49502 -16.31489 -16.04131 -15.80951 -15.68048 -15.40799 -15.26734 -15.02981 -14.34285 -14.18303 -14.08671 -13.78346 -13.70630 -13.54785 -13.48320 -13.34867 -13.01440 -12.92442 -12.68918 -12.54273 -12.42456 -12.31536 -12.09551 -11.51054 -11.43074 -10.88980 -10.84426 -10.65635 -10.17803 -9.79032 -9.50782 -9.03276 -8.44585 -6.15519 0.12394 0.69861 0.73410 1.32278 1.42975 1.52215 1.66009 1.95088 2.08035 2.13902 2.16254 2.87794 3.10885 3.22843 3.38077 3.47344 3.62128 3.78188 3.97674 4.09223 4.12930 4.23036 4.29624 4.49155 4.52111 4.57005 4.66575 4.71177 4.77100 4.89598 4.98422 4.99336 5.07861 5.08698 5.14602 5.16602 5.43032 5.49126 5.56631 5.61615 5.70592 5.96337 6.11843 6.17722 6.50271 6.66109 6.94842 7.44881 7.80810 8.76203 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003123 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.442880 B = 8964.628147 C =10758.919925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.226 3.774 3 O -0.534 6.534 4 C 0.104 3.896 5 N -0.708 5.708 6 C 0.548 3.452 7 O -0.569 6.569 8 C -0.244 4.244 9 C -0.029 4.029 10 C -0.199 4.199 11 C -0.039 4.039 12 C -0.257 4.257 13 C 0.149 3.851 14 O -0.190 6.190 15 C -0.426 4.426 16 H 0.107 0.893 17 C -0.023 4.023 18 N -0.906 5.906 19 Si 1.022 2.978 20 H -0.245 1.245 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.069 4.069 24 C -0.185 4.185 25 C -0.224 4.224 26 C -0.043 4.043 27 O -0.194 6.194 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.395 0.605 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.123 0.877 39 H 0.270 0.730 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 11.831 15.723 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.183 3.817 3 O -0.342 6.342 4 C -0.021 4.021 5 N -0.364 5.364 6 C 0.338 3.662 7 O -0.448 6.448 8 C -0.248 4.248 9 C -0.047 4.047 10 C -0.218 4.218 11 C -0.057 4.057 12 C -0.277 4.277 13 C 0.094 3.906 14 O -0.092 6.092 15 C -0.502 4.502 16 H 0.125 0.875 17 C -0.222 4.222 18 N -0.542 5.542 19 Si 0.841 3.159 20 H -0.168 1.168 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.119 4.119 24 C -0.204 4.204 25 C -0.243 4.243 26 C -0.110 4.110 27 O -0.091 6.091 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.245 0.755 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.253 0.747 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.844 10.724 15.638 20.520 hybrid contribution 1.128 -0.752 -0.437 1.425 sum -6.715 9.972 15.201 19.381 Atomic orbital electron populations 1.21837 0.89120 1.03650 1.04767 1.19377 0.95960 0.81113 0.85200 1.86559 1.28923 1.22542 1.96127 1.21814 0.98869 0.96621 0.84806 1.45449 1.54850 1.32618 1.03509 1.18575 0.79828 0.83562 0.84213 1.90938 1.39109 1.27726 1.87054 1.19248 1.11996 1.03889 0.89718 1.21296 0.92030 0.90610 1.00806 1.21182 1.05928 1.03549 0.91100 1.21444 0.92445 0.92406 0.99432 1.21299 1.07331 1.01340 0.97682 1.20086 0.88652 0.87464 0.94415 1.84182 1.56783 1.37175 1.31075 1.22083 1.37415 1.08134 0.82600 0.87534 1.26765 0.95401 0.95304 1.04743 1.70332 1.34359 1.16407 1.33066 0.84497 0.78709 0.78497 0.74198 1.16792 1.19386 1.19424 1.23102 1.07753 0.81959 0.99121 1.21825 1.04638 1.01838 0.92109 1.22221 1.07414 0.92090 1.02583 1.24877 1.02276 1.02417 0.81396 1.84070 1.65447 1.26126 1.33482 0.90838 0.89509 0.89804 0.75468 0.92462 0.92938 0.74682 0.82392 0.81747 0.82789 0.85903 0.92080 0.81613 0.80891 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.65 71.98 0.62 -1.90 16 2 C 0.23 4.90 0.99 -11.54 -0.01 4.89 16 3 O -0.53 -9.76 12.33 -148.98 -1.84 -11.59 16 4 C 0.10 3.19 4.54 86.38 0.39 3.59 16 5 N -0.71 -22.95 5.10 -466.27 -2.38 -25.33 16 6 C 0.55 25.31 7.76 86.70 0.67 25.98 16 7 O -0.57 -34.24 15.17 16.89 0.26 -33.98 16 8 C -0.24 -10.69 5.89 -19.99 -0.12 -10.80 16 9 C -0.03 -0.88 9.54 22.52 0.21 -0.67 16 10 C -0.20 -5.31 10.02 22.25 0.22 -5.08 16 11 C -0.04 -1.22 10.03 22.30 0.22 -0.99 16 12 C -0.26 -11.04 9.16 22.36 0.20 -10.83 16 13 C 0.15 7.74 6.66 22.91 0.15 7.90 16 14 O -0.19 -12.19 7.84 0.76 0.01 -12.18 16 15 C -0.43 -26.01 9.49 67.93 0.64 -25.36 16 16 H 0.11 5.83 5.21 -2.91 -0.02 5.81 16 17 C -0.02 -1.38 5.49 84.85 0.47 -0.92 16 18 N -0.91 -59.80 13.67 21.62 0.30 -59.50 16 19 Si 1.02 44.62 29.55 68.60 2.03 46.64 16 20 H -0.24 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.07 -1.56 5.86 24.83 0.15 -1.41 16 24 C -0.19 -3.49 10.35 22.19 0.23 -3.26 16 25 C -0.22 -3.78 10.91 22.19 0.24 -3.54 16 26 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 27 O -0.19 -4.95 10.26 -2.44 -0.03 -4.98 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.38 6.86 -2.39 -0.02 1.37 16 31 H 0.39 5.65 9.04 -74.06 -0.67 4.98 16 32 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 10.13 5.22 -92.71 -0.48 9.64 16 35 H 0.16 3.29 6.40 -2.91 -0.02 3.28 16 36 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 38 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 39 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 40 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -91.20 362.15 3.39 -87.80 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.06 Total: 35.51 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.12 Total: -22.39 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.08 Total: -84.83 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -1.60 Total: -62.74 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -91.20 3.39 -87.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173691686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.443 kcal (2) G-P(sol) polarization free energy of solvation -91.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds