Wall clock time and date at job start Tue Mar 31 2020 17:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.44610 * 2 1 4 4 O 1.42995 * 109.41938 * 119.91596 * 2 1 3 5 5 C 1.35668 * 116.86700 * 166.18287 * 4 2 1 6 6 C 1.39425 * 119.55960 * 327.69209 * 5 4 2 7 7 C 1.38390 * 120.06888 * 179.67804 * 6 5 4 8 8 C 1.38599 * 120.17362 * 359.75959 * 7 6 5 9 9 C 1.37751 * 120.42625 * 359.97438 * 8 7 6 10 10 C 1.39836 * 120.71038 * 146.86977 * 5 4 2 11 11 C 1.47405 * 120.24008 * 0.60857 * 10 5 4 12 12 O 1.21501 * 120.00208 * 4.23390 * 11 10 5 13 13 O 1.34751 * 120.00055 * 184.23495 * 11 10 5 14 14 C 1.45200 * 117.00413 * 184.25164 * 13 11 10 15 15 C 1.52993 * 109.47223 * 175.15693 * 14 13 11 16 16 C 1.50705 * 115.55086 * 54.89144 * 15 14 13 17 17 H 1.07995 * 120.00088 * 219.54899 * 16 15 14 18 18 C 1.37870 * 119.99576 * 39.82784 * 16 15 14 19 19 N 1.31514 * 120.00704 * 10.33938 * 18 16 15 20 20 Si 1.86806 * 119.99681 * 190.34741 * 18 16 15 21 21 H 1.48498 * 109.47387 * 89.99857 * 20 18 16 22 22 H 1.48506 * 109.47094 * 209.99998 * 20 18 16 23 23 H 1.48497 * 109.46789 * 329.99532 * 20 18 16 24 24 C 1.53001 * 117.51775 * 200.59076 * 15 14 13 25 25 C 1.53001 * 60.00027 * 107.48288 * 24 15 14 26 26 N 1.40257 * 119.21124 * 359.41243 * 6 5 4 27 27 C 1.35088 * 118.96005 * 15.68681 * 26 6 5 28 28 O 1.21289 * 120.13537 * 181.71890 * 27 26 6 29 29 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47583 * 299.93570 * 1 2 3 31 31 H 1.08997 * 109.47210 * 59.93482 * 1 2 3 32 32 H 1.08000 * 119.91106 * 179.72680 * 7 6 5 33 33 H 1.07997 * 119.79005 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.95562 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.46392 * 55.15626 * 14 13 11 36 36 H 1.08995 * 109.46918 * 295.16204 * 14 13 11 37 37 H 0.97001 * 120.00495 * 184.99076 * 19 18 16 38 38 H 1.09000 * 117.49902 * 214.97252 * 24 15 14 39 39 H 1.08998 * 117.49923 * 359.97438 * 24 15 14 40 40 H 1.08997 * 117.50011 * 252.51210 * 25 24 15 41 41 H 1.08995 * 117.49513 * 107.49007 * 25 24 15 42 42 H 0.96999 * 120.51480 * 195.66699 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0054 -0.6726 1.1689 5 6 3.3176 -1.0166 1.1873 6 6 3.9571 -1.3535 -0.0050 7 6 5.2970 -1.6996 0.0006 8 6 6.0093 -1.7080 1.1895 9 6 5.3927 -1.3722 2.3747 10 6 4.0382 -1.0202 2.3856 11 6 3.3747 -0.6613 3.6520 12 8 2.1809 -0.4359 3.6698 13 8 4.0920 -0.5832 4.7900 14 6 3.3585 -0.3182 6.0148 15 6 4.3153 -0.3850 7.2068 16 6 5.5248 0.5098 7.1204 17 1 6.4851 0.1545 7.4638 18 6 5.4042 1.7842 6.6083 19 7 4.2123 2.2934 6.3854 20 14 6.9340 2.7878 6.2310 21 1 7.3601 2.5334 4.8314 22 1 6.6333 4.2319 6.4022 23 1 8.0245 2.3958 7.1595 24 6 3.7053 -0.6166 8.5908 25 6 4.4855 -1.7377 7.9012 26 7 3.2251 -1.3418 -1.2014 27 6 2.0318 -0.7094 -1.2319 28 8 1.3668 -0.7126 -2.2462 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 5.7887 -1.9644 -0.9238 33 1 7.0548 -1.9787 1.1867 34 1 5.9549 -1.3817 3.2967 35 1 2.5734 -1.0645 6.1367 36 1 2.9113 0.6744 5.9630 37 1 4.1272 3.1601 5.9583 38 1 4.1789 -0.1218 9.4387 39 1 2.6221 -0.7210 8.6523 40 1 3.9156 -2.5800 7.5090 41 1 5.4722 -1.9804 8.2956 42 1 3.5706 -1.7807 -1.9944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174747475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:34 Heat of formation + Delta-G solvation = -92.714988 kcal Electronic energy + Delta-G solvation = -28597.471863 eV Core-core repulsion = 24509.327911 eV Total energy + Delta-G solvation = -4088.143952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73638 -39.70132 -38.70882 -37.71175 -36.71586 -35.32234 -34.98184 -32.27274 -32.16186 -30.79926 -29.15209 -26.76906 -25.47186 -25.12905 -23.87733 -23.42628 -21.28139 -20.72129 -19.83136 -19.21033 -19.07856 -17.94450 -17.32041 -16.77668 -16.49983 -15.99505 -15.62749 -15.41463 -15.02834 -14.90262 -14.65708 -14.58555 -14.41605 -13.79845 -13.31592 -13.10649 -13.03640 -12.55166 -12.44746 -12.31300 -12.04175 -11.87611 -11.67011 -11.55638 -11.33135 -11.01065 -10.94547 -10.83607 -10.51633 -10.35363 -10.25240 -9.91489 -9.52180 -9.43964 -9.12001 -8.88480 -8.73952 -8.16345 -8.12042 -6.08537 -4.11568 0.63420 0.90237 2.02881 2.45464 2.94951 3.03501 3.26833 3.33257 3.34853 3.36410 3.77098 3.79441 4.36754 4.41670 4.57484 4.71624 4.77627 4.94313 4.98427 5.11601 5.21830 5.44531 5.52161 5.57068 5.60681 5.76076 5.90572 5.98198 6.03577 6.16857 6.21140 6.24164 6.44286 6.48413 6.52578 6.61022 6.63594 6.79386 6.95755 7.11905 7.24845 7.38915 7.49290 7.50627 7.86236 8.31528 8.60103 8.84684 9.49730 10.95815 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003663 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.314586 B = 7642.475949 C = 8029.892151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.138 3.862 6 C 0.069 3.931 7 C -0.095 4.095 8 C -0.127 4.127 9 C -0.047 4.047 10 C -0.104 4.104 11 C 0.496 3.504 12 O -0.499 6.499 13 O -0.322 6.322 14 C 0.115 3.885 15 C 0.048 3.952 16 C -0.481 4.481 17 H 0.063 0.937 18 C 0.074 3.926 19 N -0.881 5.881 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.189 4.189 25 C -0.208 4.208 26 N -0.658 5.658 27 C 0.494 3.506 28 O -0.510 6.510 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.030 0.970 36 H 0.111 0.889 37 H 0.262 0.738 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 -6.853 -13.773 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.124 0.876 4 O -0.181 6.181 5 C 0.090 3.910 6 C -0.026 4.026 7 C -0.116 4.116 8 C -0.145 4.145 9 C -0.066 4.066 10 C -0.107 4.107 11 C 0.339 3.661 12 O -0.389 6.389 13 O -0.237 6.237 14 C 0.042 3.958 15 C 0.048 3.952 16 C -0.518 4.518 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.518 5.518 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.227 4.227 25 C -0.245 4.245 26 N -0.306 5.306 27 C 0.281 3.719 28 O -0.385 6.385 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.048 0.952 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.605 -6.484 -14.026 15.464 hybrid contribution 1.016 0.370 -0.724 1.301 sum 0.411 -6.114 -14.750 15.972 Atomic orbital electron populations 1.21691 0.88669 1.04399 1.04241 1.22738 0.98575 0.96496 0.80818 0.87646 1.86486 1.20328 1.72731 1.38588 1.18531 0.83655 0.97476 0.91365 1.17811 0.92856 1.07114 0.84864 1.20797 0.90727 1.00341 0.99692 1.20972 1.00678 1.01732 0.91158 1.21603 0.92056 0.93045 0.99928 1.18801 0.93708 1.07923 0.90252 1.20595 0.85368 0.75328 0.84816 1.90819 1.15763 1.45340 1.86935 1.86531 1.41185 1.80302 1.15685 1.22823 0.91969 1.02036 0.78975 1.18859 0.96180 0.92874 0.87318 1.20422 0.92850 0.96577 1.41956 0.91931 1.24899 0.95899 0.96934 0.95108 1.69860 1.21969 1.18218 1.41725 0.86610 0.83399 0.79209 0.78980 1.20384 1.21328 1.19781 1.22939 0.96958 1.03494 0.99348 1.22942 1.00516 0.92859 1.08178 1.43665 1.20088 1.54507 1.12303 1.21656 0.80414 0.78834 0.90989 1.90769 1.55225 1.59090 1.33376 0.91115 0.89606 0.89191 0.84605 0.84156 0.82551 0.95215 0.87098 0.92757 0.89761 0.91467 0.91282 0.90270 0.74542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.14 37.16 0.34 -1.14 16 2 C 0.07 0.94 3.69 -27.86 -0.10 0.84 16 3 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 4 O -0.27 -4.34 8.21 -40.36 -0.33 -4.67 16 5 C 0.14 2.11 6.45 -38.54 -0.25 1.87 16 6 C 0.07 0.82 6.54 -83.50 -0.55 0.27 16 7 C -0.09 -0.89 9.94 -39.39 -0.39 -1.28 16 8 C -0.13 -1.28 10.02 -39.63 -0.40 -1.68 16 9 C -0.05 -0.65 9.61 -39.12 -0.38 -1.03 16 10 C -0.10 -1.75 5.88 -104.93 -0.62 -2.37 16 11 C 0.50 10.42 7.88 34.46 0.27 10.69 16 12 O -0.50 -11.50 14.98 -26.52 -0.40 -11.89 16 13 O -0.32 -7.35 9.22 -40.63 -0.37 -7.72 16 14 C 0.11 2.77 4.72 37.15 0.18 2.94 16 15 C 0.05 1.17 2.05 -155.66 -0.32 0.85 16 16 C -0.48 -12.61 8.75 -34.44 -0.30 -12.92 16 17 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 18 C 0.07 1.96 5.25 -17.82 -0.09 1.87 16 19 N -0.88 -24.13 10.97 55.43 0.61 -23.52 16 20 Si 0.89 20.38 29.55 -169.99 -5.02 15.36 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 C -0.19 -4.16 9.96 -26.73 -0.27 -4.43 16 25 C -0.21 -4.36 9.92 -26.73 -0.27 -4.62 16 26 N -0.66 -7.08 5.48 -9.68 -0.05 -7.13 16 27 C 0.49 6.28 7.65 -10.82 -0.08 6.20 16 28 O -0.51 -7.40 17.01 5.55 0.09 -7.30 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.87 7.86 -51.93 -0.41 0.47 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.16 2.17 7.62 -52.49 -0.40 1.77 16 35 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.11 2.98 6.07 -51.93 -0.32 2.66 16 37 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 38 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.42 3.35 8.89 -40.82 -0.36 2.98 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -31.60 361.93 -8.50 -40.10 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.26 Total: 5.27 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.22 Total: -3.93 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.56 Total: -30.65 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.01 Total: -31.59 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.60 -8.50 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.618 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds