Wall clock time and date at job start Tue Mar 31 2020 17:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.44610 * 2 1 4 4 O 1.42995 * 109.41938 * 119.91596 * 2 1 3 5 5 C 1.35668 * 116.86700 * 166.18287 * 4 2 1 6 6 C 1.39425 * 119.55960 * 327.69209 * 5 4 2 7 7 C 1.38390 * 120.06888 * 179.67804 * 6 5 4 8 8 C 1.38599 * 120.17362 * 359.75959 * 7 6 5 9 9 C 1.37751 * 120.42625 * 359.97438 * 8 7 6 10 10 C 1.39836 * 120.71038 * 146.86977 * 5 4 2 11 11 C 1.47405 * 120.24008 * 0.60857 * 10 5 4 12 12 O 1.21501 * 120.00208 * 4.23390 * 11 10 5 13 13 O 1.34751 * 120.00055 * 184.23495 * 11 10 5 14 14 C 1.45200 * 117.00413 * 184.25164 * 13 11 10 15 15 C 1.52993 * 109.47223 * 175.15693 * 14 13 11 16 16 C 1.50705 * 115.55086 * 54.89144 * 15 14 13 17 17 H 1.07995 * 120.00088 * 219.54899 * 16 15 14 18 18 C 1.37870 * 119.99576 * 39.82784 * 16 15 14 19 19 N 1.31514 * 120.00704 * 10.33938 * 18 16 15 20 20 Si 1.86806 * 119.99681 * 190.34741 * 18 16 15 21 21 H 1.48498 * 109.47387 * 89.99857 * 20 18 16 22 22 H 1.48506 * 109.47094 * 209.99998 * 20 18 16 23 23 H 1.48497 * 109.46789 * 329.99532 * 20 18 16 24 24 C 1.53001 * 117.51775 * 200.59076 * 15 14 13 25 25 C 1.53001 * 60.00027 * 107.48288 * 24 15 14 26 26 N 1.40257 * 119.21124 * 359.41243 * 6 5 4 27 27 C 1.35088 * 118.96005 * 15.68681 * 26 6 5 28 28 O 1.21289 * 120.13537 * 181.71890 * 27 26 6 29 29 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47583 * 299.93570 * 1 2 3 31 31 H 1.08997 * 109.47210 * 59.93482 * 1 2 3 32 32 H 1.08000 * 119.91106 * 179.72680 * 7 6 5 33 33 H 1.07997 * 119.79005 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.95562 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.46392 * 55.15626 * 14 13 11 36 36 H 1.08995 * 109.46918 * 295.16204 * 14 13 11 37 37 H 0.97001 * 120.00495 * 184.99076 * 19 18 16 38 38 H 1.09000 * 117.49902 * 214.97252 * 24 15 14 39 39 H 1.08998 * 117.49923 * 359.97438 * 24 15 14 40 40 H 1.08997 * 117.50011 * 252.51210 * 25 24 15 41 41 H 1.08995 * 117.49513 * 107.49007 * 25 24 15 42 42 H 0.96999 * 120.51480 * 195.66699 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0054 -0.6726 1.1689 5 6 3.3176 -1.0166 1.1873 6 6 3.9571 -1.3535 -0.0050 7 6 5.2970 -1.6996 0.0006 8 6 6.0093 -1.7080 1.1895 9 6 5.3927 -1.3722 2.3747 10 6 4.0382 -1.0202 2.3856 11 6 3.3747 -0.6613 3.6520 12 8 2.1809 -0.4359 3.6698 13 8 4.0920 -0.5832 4.7900 14 6 3.3585 -0.3182 6.0148 15 6 4.3153 -0.3850 7.2068 16 6 5.5248 0.5098 7.1204 17 1 6.4851 0.1545 7.4638 18 6 5.4042 1.7842 6.6083 19 7 4.2123 2.2934 6.3854 20 14 6.9340 2.7878 6.2310 21 1 7.3601 2.5334 4.8314 22 1 6.6333 4.2319 6.4022 23 1 8.0245 2.3958 7.1595 24 6 3.7053 -0.6166 8.5908 25 6 4.4855 -1.7377 7.9012 26 7 3.2251 -1.3418 -1.2014 27 6 2.0318 -0.7094 -1.2319 28 8 1.3668 -0.7126 -2.2462 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 5.7887 -1.9644 -0.9238 33 1 7.0548 -1.9787 1.1867 34 1 5.9549 -1.3817 3.2967 35 1 2.5734 -1.0645 6.1367 36 1 2.9113 0.6744 5.9630 37 1 4.1272 3.1601 5.9583 38 1 4.1789 -0.1218 9.4387 39 1 2.6221 -0.7210 8.6523 40 1 3.9156 -2.5800 7.5090 41 1 5.4722 -1.9804 8.2956 42 1 3.5706 -1.7807 -1.9944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174747475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:33 Heat of formation + Delta-G solvation = -111.069728 kcal Electronic energy + Delta-G solvation = -28598.267784 eV Core-core repulsion = 24509.327911 eV Total energy + Delta-G solvation = -4088.939873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.76471 -41.17942 -39.92942 -38.74671 -38.47595 -36.73378 -36.31539 -34.14975 -33.25486 -31.87462 -30.12986 -28.51607 -27.39758 -26.19433 -25.09989 -24.41742 -22.99689 -22.08006 -21.10424 -20.81303 -20.17013 -19.13178 -18.56908 -18.26194 -17.93326 -17.22621 -17.08717 -16.99725 -16.49007 -16.09230 -15.96397 -15.69198 -15.54562 -15.42683 -14.83927 -14.32522 -14.04778 -13.91603 -13.80038 -13.55928 -13.39859 -13.24640 -13.05719 -12.82613 -12.74324 -12.64929 -12.33170 -12.29441 -12.11194 -11.97842 -11.66607 -11.37808 -11.30325 -11.10387 -11.04178 -10.60716 -10.03785 -9.90176 -9.13894 -8.07222 -6.16280 -0.44520 -0.09079 1.04052 1.45308 1.46872 1.50151 1.55932 1.61728 1.88074 2.03242 2.46358 2.63100 2.76280 3.05447 3.42502 3.59961 3.61765 3.74406 3.82872 3.94532 4.15952 4.21440 4.26301 4.33634 4.45814 4.60905 4.63946 4.67210 4.76387 4.82343 4.93668 4.98715 5.02286 5.07566 5.20021 5.29873 5.33984 5.42601 5.53968 5.57142 5.60294 5.76873 5.82782 6.09716 6.35515 6.60891 6.80815 6.95889 7.47290 8.95483 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003663 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.314586 B = 7642.475949 C = 8029.892151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.063 3.937 3 H 0.113 0.887 4 O -0.298 6.298 5 C 0.118 3.882 6 C 0.068 3.932 7 C -0.064 4.064 8 C -0.109 4.109 9 C -0.054 4.054 10 C -0.140 4.140 11 C 0.489 3.511 12 O -0.533 6.533 13 O -0.331 6.331 14 C 0.125 3.875 15 C 0.011 3.989 16 C -0.493 4.493 17 H 0.060 0.940 18 C 0.030 3.970 19 N -0.909 5.909 20 Si 0.947 3.053 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.187 4.187 25 C -0.181 4.181 26 N -0.643 5.643 27 C 0.498 3.502 28 O -0.530 6.530 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.148 0.852 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.258 0.742 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -8.213 -15.888 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.005 3.995 3 H 0.131 0.869 4 O -0.212 6.212 5 C 0.071 3.929 6 C -0.027 4.027 7 C -0.084 4.084 8 C -0.127 4.127 9 C -0.073 4.073 10 C -0.142 4.142 11 C 0.335 3.665 12 O -0.425 6.425 13 O -0.246 6.246 14 C 0.051 3.949 15 C 0.011 3.989 16 C -0.530 4.530 17 H 0.078 0.922 18 C -0.170 4.170 19 N -0.548 5.548 20 Si 0.773 3.227 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.188 1.188 24 C -0.225 4.225 25 C -0.218 4.218 26 N -0.292 5.292 27 C 0.285 3.715 28 O -0.406 6.406 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.204 0.796 33 H 0.201 0.799 34 H 0.166 0.834 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.054 -7.873 -16.146 18.080 hybrid contribution 0.221 0.732 -0.101 0.771 sum 2.275 -7.141 -16.246 17.891 Atomic orbital electron populations 1.21696 0.87870 1.04260 1.04772 1.22952 0.99386 0.96797 0.80411 0.86936 1.86446 1.21243 1.73257 1.40231 1.18743 0.83578 0.98391 0.92235 1.17892 0.93804 1.07113 0.83899 1.21372 0.89142 0.96513 1.01390 1.21410 1.02357 0.99357 0.89595 1.21677 0.90671 0.93461 1.01469 1.18698 0.95280 1.11698 0.88544 1.21464 0.85310 0.74175 0.85556 1.90778 1.17213 1.47171 1.87383 1.86527 1.41461 1.80654 1.15996 1.22494 0.92189 1.00144 0.80028 1.18975 0.96446 0.95277 0.88216 1.20671 0.93397 0.97040 1.41878 0.92157 1.25593 0.98276 0.97963 0.95159 1.70017 1.23757 1.18313 1.42686 0.85712 0.80430 0.77427 0.79144 1.19637 1.21698 1.18814 1.22942 0.97761 1.03874 0.97941 1.22958 1.01002 0.92018 1.05852 1.43481 1.19318 1.53885 1.12513 1.21495 0.80846 0.78820 0.90343 1.90763 1.55902 1.60045 1.33855 0.91569 0.90025 0.87604 0.79582 0.79950 0.83411 0.94951 0.90516 0.93250 0.90013 0.90437 0.89495 0.89240 0.72575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.14 71.98 0.66 -2.29 16 2 C 0.06 1.66 3.69 29.86 0.11 1.77 16 3 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 4 O -0.30 -9.99 8.21 -69.14 -0.57 -10.56 16 5 C 0.12 3.61 6.45 22.94 0.15 3.76 16 6 C 0.07 1.44 6.54 38.11 0.25 1.69 16 7 C -0.06 -0.87 9.94 22.39 0.22 -0.65 16 8 C -0.11 -1.72 10.02 22.24 0.22 -1.49 16 9 C -0.05 -1.40 9.61 22.57 0.22 -1.18 16 10 C -0.14 -4.77 5.88 -20.06 -0.12 -4.89 16 11 C 0.49 21.67 7.88 70.24 0.55 22.22 16 12 O -0.53 -26.29 14.98 26.77 0.40 -25.89 16 13 O -0.33 -15.77 9.22 -56.62 -0.52 -16.30 16 14 C 0.12 6.28 4.72 71.98 0.34 6.62 16 15 C 0.01 0.55 2.05 -52.93 -0.11 0.45 16 16 C -0.49 -26.12 8.75 25.60 0.22 -25.89 16 17 H 0.06 3.13 7.84 -2.91 -0.02 3.11 16 18 C 0.03 1.60 5.25 84.65 0.44 2.04 16 19 N -0.91 -51.63 10.97 21.44 0.24 -51.39 16 20 Si 0.95 42.05 29.55 68.60 2.03 44.07 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 C -0.19 -8.21 9.96 30.59 0.30 -7.91 16 25 C -0.18 -7.42 9.92 30.60 0.30 -7.11 16 26 N -0.64 -12.10 5.48 -302.73 -1.66 -13.76 16 27 C 0.50 12.07 7.65 87.63 0.67 12.74 16 28 O -0.53 -14.70 17.01 -3.06 -0.05 -14.75 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.11 2.04 7.86 -2.39 -0.02 2.02 16 32 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 33 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.15 4.03 7.62 -2.91 -0.02 4.01 16 35 H 0.03 1.55 8.04 -2.38 -0.02 1.53 16 36 H 0.08 4.38 6.07 -2.39 -0.01 4.37 16 37 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 38 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.43 5.30 8.89 -92.71 -0.82 4.47 16 Total: -1.00 -72.35 361.93 4.55 -67.80 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.25 Total: 20.90 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 4.44 Total: -0.13 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -1.42 Total: -65.15 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -0.74 Total: -67.50 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.35 4.55 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.272 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds