Wall clock time and date at job start Tue Mar 31 2020 17:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.41984 * 2 1 4 4 O 1.42997 * 109.44770 * 240.07406 * 2 1 3 5 5 C 1.35667 * 116.73497 * 286.34751 * 4 2 1 6 6 C 1.39412 * 119.56492 * 327.19677 * 5 4 2 7 7 C 1.38392 * 120.07413 * 179.97438 * 6 5 4 8 8 C 1.38594 * 120.16749 * 0.02562 * 7 6 5 9 9 C 1.37743 * 120.43233 * 359.97438 * 8 7 6 10 10 C 1.39840 * 120.71040 * 147.15978 * 5 4 2 11 11 C 1.47411 * 120.24106 * 0.07419 * 10 5 4 12 12 O 1.21507 * 120.00295 * 355.77491 * 11 10 5 13 13 O 1.34749 * 119.99927 * 175.78056 * 11 10 5 14 14 C 1.45199 * 117.00392 * 184.62591 * 13 11 10 15 15 C 1.52989 * 109.47514 * 184.04306 * 14 13 11 16 16 C 1.50702 * 115.55432 * 306.58915 * 15 14 13 17 17 H 1.07995 * 120.00020 * 144.81764 * 16 15 14 18 18 C 1.37873 * 119.99475 * 324.82315 * 16 15 14 19 19 N 1.31518 * 120.00544 * 348.39158 * 18 16 15 20 20 Si 1.86806 * 120.00011 * 168.39096 * 18 16 15 21 21 H 1.48503 * 109.47110 * 59.99655 * 20 18 16 22 22 H 1.48490 * 109.47321 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46823 * 300.00420 * 20 18 16 24 24 C 1.52999 * 117.49979 * 160.91430 * 15 14 13 25 25 C 1.53006 * 117.49763 * 92.25743 * 15 14 13 26 26 N 1.40259 * 119.20618 * 359.90081 * 6 5 4 27 27 C 1.35089 * 118.95999 * 15.75034 * 26 6 5 28 28 O 1.21294 * 120.14190 * 181.40977 * 27 26 6 29 29 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47580 * 299.92107 * 1 2 3 31 31 H 1.08999 * 109.47506 * 59.92040 * 1 2 3 32 32 H 1.07994 * 119.91643 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.78117 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.96019 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.46938 * 304.04714 * 14 13 11 36 36 H 1.09006 * 109.47104 * 64.03974 * 14 13 11 37 37 H 0.96996 * 120.00277 * 185.03446 * 19 18 16 38 38 H 1.09006 * 117.49965 * 0.02562 * 24 15 14 39 39 H 1.09007 * 117.49961 * 145.02213 * 24 15 14 40 40 H 1.09003 * 117.49773 * 214.97749 * 25 15 14 41 41 H 1.09000 * 117.49718 * 359.97438 * 25 15 14 42 42 H 0.97004 * 120.52043 * 195.47794 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0061 -0.6727 -1.1686 5 6 1.8877 -2.0241 -1.1858 6 6 1.9973 -2.7393 0.0058 7 6 1.8778 -4.1181 0.0006 8 6 1.6493 -4.7929 -1.1882 9 6 1.5387 -4.1000 -2.3736 10 6 1.6564 -2.7056 -2.3848 11 6 1.5394 -1.9607 -3.6514 12 8 1.5670 -0.7459 -3.6467 13 8 1.4017 -2.6269 -4.8146 14 6 1.3959 -1.8348 -6.0314 15 6 1.1306 -2.7456 -7.2317 16 6 2.0450 -3.9368 -7.3584 17 1 1.6635 -4.8721 -7.7403 18 6 3.3686 -3.8323 -6.9868 19 7 3.8913 -2.6509 -6.7405 20 14 4.4196 -5.3690 -6.8329 21 1 4.4686 -6.0683 -8.1421 22 1 5.7954 -4.9888 -6.4236 23 1 3.8302 -6.2715 -5.8115 24 6 0.6451 -2.0870 -8.5246 25 6 -0.3221 -2.9194 -7.6792 26 7 2.2307 -2.0449 1.2019 27 6 2.0264 -0.7100 1.2338 28 8 2.2460 -0.0843 2.2494 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 1.9636 -4.6697 0.9251 33 1 1.5566 -5.8689 -1.1851 34 1 1.3610 -4.6336 -3.2956 35 1 0.6132 -1.0787 -5.9690 36 1 2.3633 -1.3471 -6.1521 37 1 4.8391 -2.5699 -6.5506 38 1 0.5150 -1.0048 -8.5201 39 1 0.9868 -2.5156 -9.4668 40 1 -0.6164 -3.8953 -8.0656 41 1 -1.0889 -2.3852 -7.1181 42 1 2.5302 -2.5165 1.9950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174747489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:40 Heat of formation + Delta-G solvation = -92.290183 kcal Electronic energy + Delta-G solvation = -28804.043778 eV Core-core repulsion = 24715.918247 eV Total energy + Delta-G solvation = -4088.125531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80510 -39.65615 -38.67459 -37.72796 -36.69864 -35.27217 -34.94036 -32.16820 -32.14206 -30.86018 -29.21539 -26.73807 -25.43522 -25.07225 -24.07667 -23.55222 -21.28074 -20.73349 -19.70962 -19.17973 -19.01244 -17.99829 -16.92840 -16.61424 -16.42742 -15.95946 -15.61321 -15.45889 -15.37338 -14.96799 -14.66187 -14.58186 -14.44779 -13.76895 -13.41540 -13.05167 -13.04421 -12.68759 -12.46620 -12.36839 -12.02197 -11.88573 -11.70724 -11.52344 -11.31125 -10.97658 -10.93811 -10.84999 -10.51871 -10.34860 -10.24102 -9.89891 -9.47939 -9.42753 -9.11090 -8.86714 -8.76239 -8.14004 -8.12969 -6.05850 -4.09884 0.65958 0.93224 2.03824 2.47102 2.96509 3.10868 3.26927 3.33623 3.34729 3.35194 3.77235 3.83917 4.35153 4.43979 4.54859 4.67106 4.79251 4.94411 4.99324 5.13530 5.17137 5.34628 5.46396 5.47328 5.58511 5.78413 5.79483 5.98655 6.04713 6.18355 6.23164 6.26565 6.46412 6.50462 6.54382 6.62596 6.64311 6.80511 6.96576 7.12656 7.24765 7.39830 7.50552 7.51587 7.88528 8.32985 8.63052 8.85443 9.50011 10.96073 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.003868 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.752375 B = 7236.917825 C = 8096.680474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 H 0.153 0.847 4 O -0.266 6.266 5 C 0.139 3.861 6 C 0.069 3.931 7 C -0.096 4.096 8 C -0.127 4.127 9 C -0.048 4.048 10 C -0.104 4.104 11 C 0.498 3.502 12 O -0.502 6.502 13 O -0.320 6.320 14 C 0.118 3.882 15 C 0.050 3.950 16 C -0.485 4.485 17 H 0.062 0.938 18 C 0.078 3.922 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.193 4.193 25 C -0.210 4.210 26 N -0.656 5.656 27 C 0.497 3.503 28 O -0.515 6.515 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.028 0.972 36 H 0.112 0.888 37 H 0.264 0.736 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -1.607 14.365 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 H 0.170 0.830 4 O -0.178 6.178 5 C 0.090 3.910 6 C -0.026 4.026 7 C -0.116 4.116 8 C -0.146 4.146 9 C -0.066 4.066 10 C -0.106 4.106 11 C 0.342 3.658 12 O -0.392 6.392 13 O -0.234 6.234 14 C 0.045 3.955 15 C 0.049 3.951 16 C -0.522 4.522 17 H 0.080 0.920 18 C -0.126 4.126 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.231 4.231 25 C -0.247 4.247 26 N -0.303 5.303 27 C 0.284 3.716 28 O -0.389 6.389 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.047 0.953 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.343 -0.524 14.739 15.686 hybrid contribution 0.741 -0.974 0.518 1.329 sum -4.601 -1.498 15.257 16.006 Atomic orbital electron populations 1.22341 0.92242 1.03954 1.04779 1.22958 0.96900 0.97865 0.80725 0.82998 1.86555 1.77357 1.15137 1.38789 1.18495 0.97954 0.83190 0.91312 1.17792 1.07413 0.92509 0.84891 1.20792 1.00290 0.90856 0.99687 1.20969 1.01747 1.00688 0.91168 1.21616 0.93520 0.91721 0.99791 1.18814 1.07964 0.93698 0.90152 1.20569 0.74412 0.86011 0.84856 1.90807 1.45911 1.14509 1.87970 1.86526 1.81185 1.41441 1.14287 1.22816 1.02650 0.91230 0.78783 1.18869 0.90692 0.96295 0.89241 1.20366 0.93579 0.95274 1.43020 0.91996 1.24910 0.97787 0.95899 0.93987 1.69781 1.12647 1.22347 1.47037 0.86640 0.79221 0.83379 0.78716 1.20296 1.21275 1.19836 1.22970 1.05993 0.96500 0.97640 1.22969 0.94820 1.00474 1.06426 1.43642 1.66203 1.08147 1.12356 1.21579 0.77037 0.82058 0.90934 1.90788 1.49594 1.65075 1.33487 0.91652 0.90060 0.89091 0.84633 0.84203 0.82578 0.95337 0.87033 0.92588 0.91482 0.89800 0.90328 0.91318 0.74525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.29 37.16 0.35 -1.49 16 2 C 0.07 0.93 3.82 -27.86 -0.11 0.82 16 3 H 0.15 1.64 8.14 -51.93 -0.42 1.22 16 4 O -0.27 -4.28 8.31 -40.36 -0.34 -4.62 16 5 C 0.14 2.13 5.85 -38.55 -0.23 1.91 16 6 C 0.07 0.83 6.54 -83.51 -0.55 0.28 16 7 C -0.10 -0.92 9.94 -39.39 -0.39 -1.31 16 8 C -0.13 -1.33 10.02 -39.63 -0.40 -1.73 16 9 C -0.05 -0.67 9.61 -39.12 -0.38 -1.05 16 10 C -0.10 -1.77 5.88 -104.92 -0.62 -2.39 16 11 C 0.50 10.53 7.88 34.47 0.27 10.80 16 12 O -0.50 -11.51 14.93 -26.53 -0.40 -11.90 16 13 O -0.32 -7.35 9.11 -40.63 -0.37 -7.72 16 14 C 0.12 2.85 4.61 37.15 0.17 3.02 16 15 C 0.05 1.20 2.12 -155.66 -0.33 0.87 16 16 C -0.49 -12.69 8.76 -34.44 -0.30 -13.00 16 17 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 18 C 0.08 2.03 5.16 -17.82 -0.09 1.94 16 19 N -0.88 -24.01 10.81 55.43 0.60 -23.41 16 20 Si 0.89 20.28 29.56 -169.99 -5.02 15.26 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C -0.19 -4.22 9.96 -26.70 -0.27 -4.49 16 25 C -0.21 -4.41 9.92 -26.69 -0.26 -4.67 16 26 N -0.66 -7.12 5.48 -9.68 -0.05 -7.17 16 27 C 0.50 6.30 7.18 -10.82 -0.08 6.22 16 28 O -0.51 -7.63 17.95 5.55 0.10 -7.53 16 29 H 0.06 0.70 7.81 -51.93 -0.41 0.29 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.16 2.28 7.62 -52.48 -0.40 1.88 16 35 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.11 3.00 6.07 -51.93 -0.32 2.68 16 37 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.42 3.43 8.89 -40.82 -0.36 3.07 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -31.53 361.60 -8.48 -40.01 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.25 Total: 5.90 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.20 Total: -4.26 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.55 Total: -30.58 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.00 Total: -31.77 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.53 -8.48 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.282 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds