Wall clock time and date at job start Tue Mar 31 2020 17:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.41984 * 2 1 4 4 O 1.42997 * 109.44770 * 240.07406 * 2 1 3 5 5 C 1.35667 * 116.73497 * 286.34751 * 4 2 1 6 6 C 1.39412 * 119.56492 * 327.19677 * 5 4 2 7 7 C 1.38392 * 120.07413 * 179.97438 * 6 5 4 8 8 C 1.38594 * 120.16749 * 0.02562 * 7 6 5 9 9 C 1.37743 * 120.43233 * 359.97438 * 8 7 6 10 10 C 1.39840 * 120.71040 * 147.15978 * 5 4 2 11 11 C 1.47411 * 120.24106 * 0.07419 * 10 5 4 12 12 O 1.21507 * 120.00295 * 355.77491 * 11 10 5 13 13 O 1.34749 * 119.99927 * 175.78056 * 11 10 5 14 14 C 1.45199 * 117.00392 * 184.62591 * 13 11 10 15 15 C 1.52989 * 109.47514 * 184.04306 * 14 13 11 16 16 C 1.50702 * 115.55432 * 306.58915 * 15 14 13 17 17 H 1.07995 * 120.00020 * 144.81764 * 16 15 14 18 18 C 1.37873 * 119.99475 * 324.82315 * 16 15 14 19 19 N 1.31518 * 120.00544 * 348.39158 * 18 16 15 20 20 Si 1.86806 * 120.00011 * 168.39096 * 18 16 15 21 21 H 1.48503 * 109.47110 * 59.99655 * 20 18 16 22 22 H 1.48490 * 109.47321 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46823 * 300.00420 * 20 18 16 24 24 C 1.52999 * 117.49979 * 160.91430 * 15 14 13 25 25 C 1.53006 * 117.49763 * 92.25743 * 15 14 13 26 26 N 1.40259 * 119.20618 * 359.90081 * 6 5 4 27 27 C 1.35089 * 118.95999 * 15.75034 * 26 6 5 28 28 O 1.21294 * 120.14190 * 181.40977 * 27 26 6 29 29 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47580 * 299.92107 * 1 2 3 31 31 H 1.08999 * 109.47506 * 59.92040 * 1 2 3 32 32 H 1.07994 * 119.91643 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.78117 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.96019 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.46938 * 304.04714 * 14 13 11 36 36 H 1.09006 * 109.47104 * 64.03974 * 14 13 11 37 37 H 0.96996 * 120.00277 * 185.03446 * 19 18 16 38 38 H 1.09006 * 117.49965 * 0.02562 * 24 15 14 39 39 H 1.09007 * 117.49961 * 145.02213 * 24 15 14 40 40 H 1.09003 * 117.49773 * 214.97749 * 25 15 14 41 41 H 1.09000 * 117.49718 * 359.97438 * 25 15 14 42 42 H 0.97004 * 120.52043 * 195.47794 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0061 -0.6727 -1.1686 5 6 1.8877 -2.0241 -1.1858 6 6 1.9973 -2.7393 0.0058 7 6 1.8778 -4.1181 0.0006 8 6 1.6493 -4.7929 -1.1882 9 6 1.5387 -4.1000 -2.3736 10 6 1.6564 -2.7056 -2.3848 11 6 1.5394 -1.9607 -3.6514 12 8 1.5670 -0.7459 -3.6467 13 8 1.4017 -2.6269 -4.8146 14 6 1.3959 -1.8348 -6.0314 15 6 1.1306 -2.7456 -7.2317 16 6 2.0450 -3.9368 -7.3584 17 1 1.6635 -4.8721 -7.7403 18 6 3.3686 -3.8323 -6.9868 19 7 3.8913 -2.6509 -6.7405 20 14 4.4196 -5.3690 -6.8329 21 1 4.4686 -6.0683 -8.1421 22 1 5.7954 -4.9888 -6.4236 23 1 3.8302 -6.2715 -5.8115 24 6 0.6451 -2.0870 -8.5246 25 6 -0.3221 -2.9194 -7.6792 26 7 2.2307 -2.0449 1.2019 27 6 2.0264 -0.7100 1.2338 28 8 2.2460 -0.0843 2.2494 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 1.9636 -4.6697 0.9251 33 1 1.5566 -5.8689 -1.1851 34 1 1.3610 -4.6336 -3.2956 35 1 0.6132 -1.0787 -5.9690 36 1 2.3633 -1.3471 -6.1521 37 1 4.8391 -2.5699 -6.5506 38 1 0.5150 -1.0048 -8.5201 39 1 0.9868 -2.5156 -9.4668 40 1 -0.6164 -3.8953 -8.0656 41 1 -1.0889 -2.3852 -7.1181 42 1 2.5302 -2.5165 1.9950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174747489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:39 Heat of formation + Delta-G solvation = -110.651885 kcal Electronic energy + Delta-G solvation = -28804.840001 eV Core-core repulsion = 24715.918247 eV Total energy + Delta-G solvation = -4088.921754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.83445 -41.14655 -39.89977 -38.76671 -38.45628 -36.70131 -36.27501 -34.14601 -33.09322 -31.94628 -30.20413 -28.48962 -27.38044 -26.02775 -25.33275 -24.56764 -22.99514 -22.11751 -21.08010 -20.66938 -20.10453 -19.17636 -18.49926 -18.08815 -17.64195 -17.16552 -17.04155 -16.93594 -16.50856 -16.41734 -16.14198 -15.69805 -15.49736 -15.40239 -14.90373 -14.36353 -14.03691 -13.89713 -13.79845 -13.58910 -13.45218 -13.24701 -13.05276 -12.76902 -12.76627 -12.70564 -12.31079 -12.28571 -12.10933 -11.97544 -11.66259 -11.33489 -11.29330 -11.08315 -11.02816 -10.62542 -10.03854 -9.89412 -9.12968 -8.03245 -6.13659 -0.43419 -0.07488 1.04514 1.46458 1.48384 1.49814 1.56020 1.64873 1.92612 2.09152 2.46348 2.63417 2.76900 3.06090 3.44159 3.62791 3.64567 3.73310 3.84241 3.95242 4.15751 4.22499 4.25927 4.34354 4.45169 4.50256 4.57777 4.62981 4.77135 4.83205 4.93883 4.94715 5.02409 5.06238 5.20787 5.30370 5.34066 5.42605 5.54228 5.56380 5.60844 5.79041 5.85475 6.10551 6.37274 6.60543 6.81678 6.98997 7.48741 8.96696 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.003868 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.752375 B = 7236.917825 C = 8096.680474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.066 3.934 3 H 0.161 0.839 4 O -0.297 6.297 5 C 0.123 3.877 6 C 0.069 3.931 7 C -0.065 4.065 8 C -0.111 4.111 9 C -0.056 4.056 10 C -0.140 4.140 11 C 0.491 3.509 12 O -0.534 6.534 13 O -0.330 6.330 14 C 0.128 3.872 15 C 0.012 3.988 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.034 3.966 19 N -0.909 5.909 20 Si 0.948 3.052 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.259 1.259 24 C -0.189 4.189 25 C -0.185 4.185 26 N -0.642 5.642 27 C 0.501 3.499 28 O -0.538 6.538 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.144 0.856 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.259 0.741 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -4.239 16.579 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 H 0.178 0.822 4 O -0.211 6.211 5 C 0.076 3.924 6 C -0.026 4.026 7 C -0.085 4.085 8 C -0.129 4.129 9 C -0.075 4.075 10 C -0.142 4.142 11 C 0.337 3.663 12 O -0.426 6.426 13 O -0.245 6.245 14 C 0.055 3.945 15 C 0.012 3.988 16 C -0.536 4.536 17 H 0.078 0.922 18 C -0.166 4.166 19 N -0.547 5.547 20 Si 0.773 3.227 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.184 1.184 24 C -0.227 4.227 25 C -0.222 4.222 26 N -0.290 5.290 27 C 0.288 3.712 28 O -0.415 6.415 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.204 0.796 33 H 0.198 0.802 34 H 0.162 0.838 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.991 -3.194 16.958 18.266 hybrid contribution 0.907 -0.161 -0.128 0.930 sum -5.084 -3.355 16.830 17.898 Atomic orbital electron populations 1.22288 0.90831 1.04013 1.05393 1.23197 0.98136 0.98037 0.79902 0.82213 1.86505 1.77909 1.16065 1.40611 1.18661 0.98586 0.83162 0.92040 1.17867 1.07404 0.93387 0.83978 1.21354 0.96218 0.89618 1.01310 1.21384 0.99423 1.02423 0.89668 1.21652 0.94103 0.90530 1.01191 1.18709 1.12085 0.94852 0.88566 1.21418 0.73146 0.86181 0.85558 1.90763 1.47593 1.15881 1.88367 1.86523 1.81682 1.41621 1.14644 1.22489 1.00767 0.91428 0.79834 1.18997 0.92872 0.96738 0.90220 1.20618 0.94188 0.95792 1.42976 0.92212 1.25588 0.98927 0.98290 0.93781 1.69956 1.12398 1.24140 1.48216 0.85766 0.77410 0.80406 0.79104 1.19712 1.21715 1.18383 1.22975 1.05797 0.97324 0.96624 1.22981 0.93429 1.00860 1.04897 1.43474 1.65475 1.07574 1.12514 1.21493 0.76681 0.82609 0.90379 1.90782 1.50849 1.65667 1.34174 0.91821 0.88000 0.89820 0.79620 0.80159 0.83790 0.95100 0.90426 0.93188 0.90400 0.89935 0.89354 0.89608 0.72654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 9.29 71.98 0.67 -2.78 16 2 C 0.07 1.64 3.82 29.86 0.11 1.76 16 3 H 0.16 3.55 8.14 -2.39 -0.02 3.53 16 4 O -0.30 -9.90 8.31 -69.12 -0.57 -10.47 16 5 C 0.12 3.77 5.85 22.94 0.13 3.91 16 6 C 0.07 1.47 6.54 38.11 0.25 1.72 16 7 C -0.06 -0.93 9.94 22.39 0.22 -0.71 16 8 C -0.11 -1.86 10.02 22.24 0.22 -1.64 16 9 C -0.06 -1.52 9.61 22.57 0.22 -1.30 16 10 C -0.14 -4.85 5.88 -20.06 -0.12 -4.96 16 11 C 0.49 21.88 7.88 70.24 0.55 22.44 16 12 O -0.53 -26.13 14.93 26.75 0.40 -25.73 16 13 O -0.33 -15.84 9.11 -56.60 -0.52 -16.35 16 14 C 0.13 6.47 4.61 71.98 0.33 6.80 16 15 C 0.01 0.60 2.12 -52.93 -0.11 0.49 16 16 C -0.50 -26.39 8.76 25.60 0.22 -26.16 16 17 H 0.06 3.10 7.84 -2.91 -0.02 3.07 16 18 C 0.03 1.83 5.16 84.65 0.44 2.27 16 19 N -0.91 -51.36 10.81 21.45 0.23 -51.12 16 20 Si 0.95 41.69 29.56 68.60 2.03 43.71 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.19 -8.26 9.96 30.62 0.30 -7.96 16 25 C -0.18 -7.59 9.92 30.62 0.30 -7.29 16 26 N -0.64 -12.20 5.48 -302.74 -1.66 -13.85 16 27 C 0.50 12.05 7.18 87.62 0.63 12.68 16 28 O -0.54 -15.28 17.95 -3.07 -0.06 -15.34 16 29 H 0.06 1.31 7.81 -2.39 -0.02 1.29 16 30 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 33 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.14 4.20 7.62 -2.91 -0.02 4.18 16 35 H 0.03 1.48 7.94 -2.39 -0.02 1.46 16 36 H 0.08 4.43 6.07 -2.38 -0.01 4.42 16 37 H 0.26 14.24 8.32 -92.71 -0.77 13.46 16 38 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 39 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 40 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.43 5.50 8.89 -92.71 -0.82 4.68 16 Total: -1.00 -72.13 361.60 4.48 -67.64 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.25 Total: 22.25 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.38 Total: -0.74 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -1.43 Total: -64.98 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: -0.75 Total: -67.89 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -72.13 4.48 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.009 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds