Wall clock time and date at job start Tue Mar 31 2020 17:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00159 * 2 1 4 4 O 1.20822 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99892 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46856 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99953 * 264.40906 * 6 5 3 8 8 H 1.07991 * 120.00015 * 195.76980 * 7 6 5 9 9 C 1.38955 * 119.99836 * 15.76410 * 7 6 5 10 10 N 1.31408 * 120.00017 * 19.66570 * 9 7 6 11 11 Si 1.86799 * 119.99734 * 199.66226 * 9 7 6 12 12 H 1.48507 * 109.47266 * 90.00395 * 11 9 7 13 13 H 1.48506 * 109.47215 * 210.00014 * 11 9 7 14 14 H 1.48501 * 109.47439 * 330.00184 * 11 9 7 15 15 C 1.34767 * 120.00165 * 84.41363 * 6 5 3 16 16 O 1.21294 * 120.00356 * 4.60857 * 15 6 5 17 17 C 1.50705 * 120.00321 * 184.61127 * 15 6 5 18 18 H 1.08997 * 109.47008 * 322.37525 * 17 15 6 19 19 C 1.53006 * 109.46830 * 82.36695 * 17 15 6 20 20 C 1.50697 * 109.47181 * 202.36729 * 17 15 6 21 21 C 1.33994 * 124.92220 * 120.00349 * 20 17 15 22 22 C 1.46780 * 106.18906 * 179.97438 * 21 20 17 23 23 C 1.39404 * 134.37371 * 179.97438 * 22 21 20 24 24 C 1.36741 * 119.71665 * 179.97438 * 23 22 21 25 25 C 1.38733 * 120.41659 * 359.97438 * 24 23 22 26 26 C 1.37845 * 120.68826 * 0.03265 * 25 24 23 27 27 C 1.38942 * 119.81994 * 359.96970 * 26 25 24 28 28 O 1.34453 * 124.92436 * 299.69289 * 20 17 15 29 29 H 1.09004 * 109.47308 * 300.00261 * 1 2 3 30 30 H 1.09004 * 109.47092 * 60.00083 * 1 2 3 31 31 H 1.08998 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47643 * 59.99626 * 5 3 2 33 33 H 1.08998 * 109.47042 * 299.99377 * 5 3 2 34 34 H 0.96999 * 119.99992 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.46837 * 177.26755 * 19 17 15 36 36 H 1.09000 * 109.47364 * 297.26620 * 19 17 15 37 37 H 1.08996 * 109.47162 * 57.26914 * 19 17 15 38 38 H 1.08001 * 126.90535 * 359.95842 * 21 20 17 39 39 H 1.08001 * 120.13958 * 359.97438 * 23 22 21 40 40 H 1.08005 * 119.78815 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.66015 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.09184 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2866 3.3039 -1.1830 8 1 4.8283 4.2381 -1.1762 9 6 3.8985 2.7346 -2.3897 10 7 2.9360 1.8403 -2.4148 11 14 4.7450 3.2406 -3.9761 12 1 5.9122 2.3550 -4.2187 13 1 3.7897 3.1212 -5.1069 14 1 5.2062 4.6477 -3.8642 15 6 4.0643 3.3584 1.1603 16 8 3.8762 2.7851 2.2125 17 6 4.3902 4.8298 1.1517 18 1 5.1244 5.0347 0.3726 19 6 3.1170 5.6325 0.8764 20 6 4.9548 5.2270 2.4913 21 6 6.1727 5.7508 2.6856 22 6 6.2939 5.9798 4.1303 23 6 7.2938 6.4920 4.9557 24 6 7.0837 6.5739 6.3044 25 6 5.8825 6.1512 6.8550 26 6 4.8823 5.6419 6.0547 27 6 5.0753 5.5500 4.6819 28 8 4.3072 5.1128 3.6640 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9558 0.7808 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 2.6654 1.4425 -3.2571 35 1 3.3432 6.6979 0.9183 36 1 2.7355 5.3807 -0.1131 37 1 2.3655 5.3908 1.6280 38 1 6.9159 5.9618 1.9309 39 1 8.2305 6.8227 4.5317 40 1 7.8574 6.9709 6.9448 41 1 5.7294 6.2218 7.9217 42 1 3.9511 5.3153 6.4936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176438055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:12 Heat of formation + Delta-G solvation = -75.786775 kcal Electronic energy + Delta-G solvation = -28712.435963 eV Core-core repulsion = 24625.026074 eV Total energy + Delta-G solvation = -4087.409889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15105 -39.55633 -38.52356 -37.62101 -35.51716 -34.66713 -33.65358 -32.04957 -31.61748 -30.20917 -28.74505 -28.15264 -26.33543 -25.00670 -23.92972 -22.65716 -21.69442 -20.98835 -20.10296 -19.23889 -17.49824 -17.09378 -16.68175 -16.50757 -16.03430 -15.65744 -15.45461 -15.28847 -15.16343 -14.47063 -14.27149 -13.95331 -13.75649 -13.46420 -13.08581 -12.94167 -12.72624 -12.51745 -12.43815 -12.07517 -11.86388 -11.79413 -11.53622 -11.38696 -11.29243 -11.13937 -11.03482 -10.84477 -10.68808 -10.57418 -10.38594 -9.88147 -9.84944 -9.64431 -9.07090 -8.66365 -8.40574 -8.05804 -7.85278 -6.58832 -4.09374 1.10538 1.54366 2.65085 3.01022 3.06381 3.13438 3.15672 3.40486 3.65067 3.87579 3.93307 4.02085 4.43332 4.71461 4.85611 4.89459 5.01846 5.30726 5.39633 5.41177 5.50748 5.67216 5.70437 5.70939 5.76168 5.84117 5.91808 5.94774 6.02078 6.16251 6.26266 6.38851 6.40318 6.41230 6.44636 6.53986 6.62256 6.68557 6.79187 6.88635 7.23603 7.39514 7.51084 7.56508 8.12377 8.87940 9.05446 9.24687 9.65106 10.47911 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.003741 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.279827 B = 7482.377953 C = 8863.502688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.486 3.514 4 O -0.501 6.501 5 C 0.156 3.844 6 N -0.425 5.425 7 C -0.339 4.339 8 H 0.106 0.894 9 C 0.040 3.960 10 N -0.868 5.868 11 Si 0.927 3.073 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.268 1.268 15 C 0.474 3.526 16 O -0.588 6.588 17 C -0.024 4.024 18 H 0.122 0.878 19 C -0.132 4.132 20 C 0.092 3.908 21 C -0.231 4.231 22 C -0.124 4.124 23 C -0.077 4.077 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.104 4.104 27 C 0.050 3.950 28 O -0.167 6.167 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.274 0.726 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 4.607 7.257 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.327 3.673 4 O -0.386 6.386 5 C 0.030 3.970 6 N -0.143 5.143 7 C -0.466 4.466 8 H 0.124 0.876 9 C -0.166 4.166 10 N -0.506 5.506 11 Si 0.753 3.247 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.193 1.193 15 C 0.262 3.738 16 O -0.472 6.472 17 C -0.045 4.045 18 H 0.140 0.860 19 C -0.190 4.190 20 C 0.043 3.957 21 C -0.250 4.250 22 C -0.125 4.125 23 C -0.095 4.095 24 C -0.161 4.161 25 C -0.124 4.124 26 C -0.123 4.123 27 C 0.002 3.998 28 O -0.067 6.067 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.174 0.826 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.550 4.396 7.637 9.500 hybrid contribution 0.115 0.259 -1.160 1.194 sum 3.665 4.656 6.477 8.779 Atomic orbital electron populations 1.22936 0.78672 1.01841 1.01633 1.86455 1.21695 1.35433 1.85639 1.23941 0.92268 0.80585 0.70514 1.90508 1.66531 1.36358 1.45208 1.20515 0.87228 0.85409 1.03854 1.43345 1.57046 1.08086 1.05871 1.19664 1.35428 1.09250 0.82219 0.87641 1.25215 0.94800 0.96872 0.99669 1.69819 1.23972 1.28702 1.28120 0.85926 0.78956 0.79222 0.80583 1.20104 1.20951 1.19288 1.19776 0.82384 0.87576 0.84037 1.90601 1.55856 1.69615 1.31164 1.19979 1.00469 0.95244 0.88854 0.86028 1.21608 0.95274 0.97940 1.04163 1.22121 0.91315 0.96399 0.85897 1.22130 0.98142 1.10503 0.94203 1.19957 0.95381 1.03449 0.93665 1.20226 0.97770 0.98591 0.92893 1.20675 0.97822 1.02804 0.94787 1.20811 0.93029 0.99252 0.99298 1.19937 1.00918 1.03262 0.88166 1.19734 0.90475 0.99594 0.90021 1.84104 1.40975 1.68078 1.13547 0.93155 0.92596 0.89589 0.85477 0.89994 0.91532 0.92443 0.89630 0.92233 0.82587 0.85889 0.85828 0.85256 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -8.06 10.56 -39.25 -0.41 -8.47 16 3 C 0.49 11.90 6.14 36.01 0.22 12.12 16 4 O -0.50 -13.61 15.85 -18.75 -0.30 -13.90 16 5 C 0.16 3.68 5.18 -5.19 -0.03 3.65 16 6 N -0.43 -10.30 2.17 -116.09 -0.25 -10.55 16 7 C -0.34 -7.95 8.74 -14.93 -0.13 -8.08 16 8 H 0.11 2.27 5.94 -52.49 -0.31 1.96 16 9 C 0.04 0.93 4.94 -17.47 -0.09 0.84 16 10 N -0.87 -21.48 9.17 55.50 0.51 -20.97 16 11 Si 0.93 18.27 29.60 -169.99 -5.03 13.24 16 12 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 15 C 0.47 11.39 6.56 -10.99 -0.07 11.31 16 16 O -0.59 -15.72 15.39 -7.64 -0.12 -15.84 16 17 C -0.02 -0.49 2.39 -92.92 -0.22 -0.71 16 18 H 0.12 2.17 6.22 -51.93 -0.32 1.85 16 19 C -0.13 -2.49 9.12 37.16 0.34 -2.15 16 20 C 0.09 1.79 5.36 -35.80 -0.19 1.59 16 21 C -0.23 -3.91 10.97 -37.62 -0.41 -4.33 16 22 C -0.12 -2.05 6.40 -105.16 -0.67 -2.73 16 23 C -0.08 -1.02 10.05 -39.69 -0.40 -1.42 16 24 C -0.14 -1.65 9.98 -39.94 -0.40 -2.05 16 25 C -0.11 -1.25 10.01 -39.54 -0.40 -1.65 16 26 C -0.10 -1.52 10.07 -39.46 -0.40 -1.92 16 27 C 0.05 0.90 7.42 -38.47 -0.29 0.61 16 28 O -0.17 -3.48 9.95 -9.28 -0.09 -3.57 16 29 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.13 2.97 6.26 -51.93 -0.33 2.64 16 33 H 0.08 1.85 7.54 -51.93 -0.39 1.46 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.72 7.75 -51.93 -0.40 1.32 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -31.76 360.89 -7.44 -39.20 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.12 Total: 8.51 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.06 Total: 6.92 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.26 Total: -31.52 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.92 Total: -41.79 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.76 -7.44 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176438055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.588 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds