Wall clock time and date at job start Tue Mar 31 2020 17:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00159 * 2 1 4 4 O 1.20822 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99892 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46856 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99953 * 264.40906 * 6 5 3 8 8 H 1.07991 * 120.00015 * 195.76980 * 7 6 5 9 9 C 1.38955 * 119.99836 * 15.76410 * 7 6 5 10 10 N 1.31408 * 120.00017 * 19.66570 * 9 7 6 11 11 Si 1.86799 * 119.99734 * 199.66226 * 9 7 6 12 12 H 1.48507 * 109.47266 * 90.00395 * 11 9 7 13 13 H 1.48506 * 109.47215 * 210.00014 * 11 9 7 14 14 H 1.48501 * 109.47439 * 330.00184 * 11 9 7 15 15 C 1.34767 * 120.00165 * 84.41363 * 6 5 3 16 16 O 1.21294 * 120.00356 * 4.60857 * 15 6 5 17 17 C 1.50705 * 120.00321 * 184.61127 * 15 6 5 18 18 H 1.08997 * 109.47008 * 322.37525 * 17 15 6 19 19 C 1.53006 * 109.46830 * 82.36695 * 17 15 6 20 20 C 1.50697 * 109.47181 * 202.36729 * 17 15 6 21 21 C 1.33994 * 124.92220 * 120.00349 * 20 17 15 22 22 C 1.46780 * 106.18906 * 179.97438 * 21 20 17 23 23 C 1.39404 * 134.37371 * 179.97438 * 22 21 20 24 24 C 1.36741 * 119.71665 * 179.97438 * 23 22 21 25 25 C 1.38733 * 120.41659 * 359.97438 * 24 23 22 26 26 C 1.37845 * 120.68826 * 0.03265 * 25 24 23 27 27 C 1.38942 * 119.81994 * 359.96970 * 26 25 24 28 28 O 1.34453 * 124.92436 * 299.69289 * 20 17 15 29 29 H 1.09004 * 109.47308 * 300.00261 * 1 2 3 30 30 H 1.09004 * 109.47092 * 60.00083 * 1 2 3 31 31 H 1.08998 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47643 * 59.99626 * 5 3 2 33 33 H 1.08998 * 109.47042 * 299.99377 * 5 3 2 34 34 H 0.96999 * 119.99992 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.46837 * 177.26755 * 19 17 15 36 36 H 1.09000 * 109.47364 * 297.26620 * 19 17 15 37 37 H 1.08996 * 109.47162 * 57.26914 * 19 17 15 38 38 H 1.08001 * 126.90535 * 359.95842 * 21 20 17 39 39 H 1.08001 * 120.13958 * 359.97438 * 23 22 21 40 40 H 1.08005 * 119.78815 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.66015 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.09184 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2866 3.3039 -1.1830 8 1 4.8283 4.2381 -1.1762 9 6 3.8985 2.7346 -2.3897 10 7 2.9360 1.8403 -2.4148 11 14 4.7450 3.2406 -3.9761 12 1 5.9122 2.3550 -4.2187 13 1 3.7897 3.1212 -5.1069 14 1 5.2062 4.6477 -3.8642 15 6 4.0643 3.3584 1.1603 16 8 3.8762 2.7851 2.2125 17 6 4.3902 4.8298 1.1517 18 1 5.1244 5.0347 0.3726 19 6 3.1170 5.6325 0.8764 20 6 4.9548 5.2270 2.4913 21 6 6.1727 5.7508 2.6856 22 6 6.2939 5.9798 4.1303 23 6 7.2938 6.4920 4.9557 24 6 7.0837 6.5739 6.3044 25 6 5.8825 6.1512 6.8550 26 6 4.8823 5.6419 6.0547 27 6 5.0753 5.5500 4.6819 28 8 4.3072 5.1128 3.6640 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9558 0.7808 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 2.6654 1.4425 -3.2571 35 1 3.3432 6.6979 0.9183 36 1 2.7355 5.3807 -0.1131 37 1 2.3655 5.3908 1.6280 38 1 6.9159 5.9618 1.9309 39 1 8.2305 6.8227 4.5317 40 1 7.8574 6.9709 6.9448 41 1 5.7294 6.2218 7.9217 42 1 3.9511 5.3153 6.4936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176438055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:11 Heat of formation + Delta-G solvation = -92.494608 kcal Electronic energy + Delta-G solvation = -28713.160469 eV Core-core repulsion = 24625.026074 eV Total energy + Delta-G solvation = -4088.134395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.42029 -41.40588 -40.29671 -38.74527 -37.34919 -36.56429 -35.18994 -33.52452 -33.23080 -31.28137 -30.38634 -29.50217 -27.93407 -26.80921 -25.38638 -23.85041 -23.00885 -22.34580 -21.75473 -20.99723 -19.13943 -18.53636 -18.33659 -18.18611 -17.31053 -17.29659 -17.07733 -16.95244 -16.50063 -16.09298 -15.83481 -15.53432 -15.02498 -14.82586 -14.68541 -14.31078 -14.24515 -14.07506 -13.92432 -13.48365 -13.23900 -13.13083 -13.06994 -12.89619 -12.88488 -12.70709 -12.54534 -12.47103 -12.24972 -12.02118 -11.79146 -11.60558 -11.54699 -11.08640 -10.94811 -10.47434 -9.93193 -9.52737 -9.06280 -8.38243 -5.95126 -0.01037 0.45775 1.36473 1.41195 1.52815 1.62154 1.65225 1.74314 1.85235 2.22711 2.33325 2.78414 2.82828 3.09910 3.38056 3.77673 4.03342 4.04876 4.11825 4.19486 4.19553 4.24747 4.32203 4.34130 4.38195 4.45312 4.51092 4.58814 4.67166 4.71022 4.74661 4.82875 4.87766 4.98289 5.17138 5.30583 5.39202 5.45098 5.53409 5.53894 5.58441 5.67555 5.86198 6.29680 6.32052 7.04991 7.16783 7.41489 7.82168 8.68741 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.003741 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.279827 B = 7482.377953 C = 8863.502688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.536 6.536 5 C 0.152 3.848 6 N -0.432 5.432 7 C -0.353 4.353 8 H 0.124 0.876 9 C -0.001 4.001 10 N -0.897 5.897 11 Si 0.996 3.004 12 H -0.270 1.270 13 H -0.293 1.293 14 H -0.254 1.254 15 C 0.459 3.541 16 O -0.626 6.626 17 C -0.016 4.016 18 H 0.142 0.858 19 C -0.121 4.121 20 C 0.050 3.950 21 C -0.212 4.212 22 C -0.149 4.149 23 C -0.078 4.078 24 C -0.135 4.135 25 C -0.088 4.088 26 C -0.130 4.130 27 C 0.012 3.988 28 O -0.205 6.205 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.273 0.727 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.184 0.816 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 6.118 7.953 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.330 3.670 4 O -0.424 6.424 5 C 0.026 3.974 6 N -0.149 5.149 7 C -0.479 4.479 8 H 0.141 0.859 9 C -0.203 4.203 10 N -0.535 5.535 11 Si 0.820 3.180 12 H -0.196 1.196 13 H -0.219 1.219 14 H -0.178 1.178 15 C 0.250 3.750 16 O -0.514 6.514 17 C -0.037 4.037 18 H 0.160 0.840 19 C -0.178 4.178 20 C 0.002 3.998 21 C -0.231 4.231 22 C -0.149 4.149 23 C -0.096 4.096 24 C -0.152 4.152 25 C -0.106 4.106 26 C -0.148 4.148 27 C -0.035 4.035 28 O -0.107 6.107 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.202 0.798 39 H 0.169 0.831 40 H 0.184 0.816 41 H 0.186 0.814 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.923 5.899 8.333 11.803 hybrid contribution -0.641 -0.248 -1.199 1.382 sum 5.282 5.651 7.133 10.522 Atomic orbital electron populations 1.23298 0.76149 1.04898 1.01187 1.86422 1.24146 1.33781 1.84995 1.24053 0.92591 0.80827 0.69561 1.90478 1.67322 1.37594 1.47034 1.20560 0.87170 0.85871 1.03790 1.43598 1.56680 1.08242 1.06423 1.20133 1.35656 1.10049 0.82102 0.85899 1.26100 0.94895 0.96735 1.02545 1.69929 1.25125 1.29828 1.28658 0.84865 0.77527 0.79588 0.76030 1.19555 1.21908 1.17767 1.20560 0.81830 0.89296 0.83362 1.90551 1.57551 1.70842 1.32423 1.19893 1.01159 0.92153 0.90452 0.84036 1.21505 0.94374 0.99912 1.02038 1.22069 0.92667 0.99549 0.85500 1.22529 0.97258 1.07970 0.95321 1.20259 0.96029 1.04970 0.93684 1.20668 0.97912 0.97523 0.93492 1.21226 0.98420 1.00995 0.94591 1.21356 0.92021 0.96338 1.00885 1.20328 1.02483 1.04627 0.87365 1.20386 0.91315 1.00988 0.90825 1.84014 1.42602 1.69418 1.14625 0.93274 0.93426 0.84755 0.85433 0.89836 0.91724 0.89018 0.91286 0.94830 0.79836 0.83060 0.81607 0.81363 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.50 10.56 -51.38 -0.54 -17.04 16 3 C 0.49 24.77 6.14 71.24 0.44 25.21 16 4 O -0.54 -30.42 15.85 21.98 0.35 -30.08 16 5 C 0.15 7.48 5.18 85.63 0.44 7.93 16 6 N -0.43 -21.63 2.17 -639.60 -1.39 -23.02 16 7 C -0.35 -16.71 8.74 84.04 0.73 -15.98 16 8 H 0.12 5.22 5.94 -2.92 -0.02 5.20 16 9 C 0.00 -0.03 4.94 84.93 0.42 0.39 16 10 N -0.90 -45.17 9.17 21.66 0.20 -44.97 16 11 Si 1.00 37.00 29.60 68.60 2.03 39.03 16 12 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 13 H -0.29 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 15 C 0.46 23.06 6.56 87.66 0.58 23.64 16 16 O -0.63 -35.48 15.39 9.53 0.15 -35.33 16 17 C -0.02 -0.65 2.39 -12.28 -0.03 -0.68 16 18 H 0.14 5.02 6.22 -2.39 -0.01 5.01 16 19 C -0.12 -4.70 9.12 71.98 0.66 -4.05 16 20 C 0.05 2.01 5.36 24.72 0.13 2.14 16 21 C -0.21 -7.07 10.97 23.54 0.26 -6.81 16 22 C -0.15 -4.80 6.40 -20.21 -0.13 -4.93 16 23 C -0.08 -1.84 10.05 22.20 0.22 -1.61 16 24 C -0.13 -2.53 9.98 22.04 0.22 -2.31 16 25 C -0.09 -1.80 10.01 22.30 0.22 -1.58 16 26 C -0.13 -3.73 10.07 22.35 0.23 -3.50 16 27 C 0.01 0.44 7.42 22.99 0.17 0.61 16 28 O -0.20 -9.01 9.95 3.66 0.04 -8.98 16 29 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.13 6.18 6.26 -2.39 -0.01 6.17 16 33 H 0.08 3.99 7.54 -2.39 -0.02 3.97 16 34 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.85 16 36 H 0.07 2.87 7.75 -2.39 -0.02 2.85 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 42 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -73.61 360.89 7.64 -65.97 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 1.05 Total: 33.45 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 5.76 Total: 20.97 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.19 Total: -67.99 kcal Atomic # 8 Polarization: -91.42 SS G_CDS: -0.01 Total: -91.43 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -73.61 7.64 -65.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176438055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.525 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds