Wall clock time and date at job start Tue Mar 31 2020 17:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99500 * 2 1 4 4 O 1.20826 * 120.00490 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00156 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47649 * 185.30510 * 5 3 2 7 7 C 1.37092 * 120.00038 * 94.96567 * 6 5 3 8 8 H 1.08005 * 120.00165 * 219.17333 * 7 6 5 9 9 C 1.38950 * 120.00167 * 39.17019 * 7 6 5 10 10 N 1.31408 * 120.00541 * 212.06028 * 9 7 6 11 11 Si 1.86800 * 119.99792 * 32.06246 * 9 7 6 12 12 H 1.48497 * 109.47276 * 94.38585 * 11 9 7 13 13 H 1.48500 * 109.47249 * 214.38603 * 11 9 7 14 14 H 1.48499 * 109.47167 * 334.38844 * 11 9 7 15 15 C 1.34782 * 119.99728 * 274.96842 * 6 5 3 16 16 O 1.21287 * 120.00135 * 355.75787 * 15 6 5 17 17 C 1.50696 * 119.99330 * 175.76069 * 15 6 5 18 18 H 1.08998 * 109.47978 * 33.89190 * 17 15 6 19 19 C 1.53002 * 109.47419 * 273.88684 * 17 15 6 20 20 C 1.50702 * 109.47055 * 153.89319 * 17 15 6 21 21 C 1.33998 * 124.92143 * 239.72598 * 20 17 15 22 22 C 1.46788 * 106.18637 * 179.89137 * 21 20 17 23 23 C 1.39402 * 134.37245 * 180.11149 * 22 21 20 24 24 C 1.36739 * 119.71640 * 180.26392 * 23 22 21 25 25 C 1.38744 * 120.41780 * 0.02562 * 24 23 22 26 26 C 1.37846 * 120.68440 * 359.97438 * 25 24 23 27 27 C 1.38942 * 119.82228 * 0.02562 * 26 25 24 28 28 O 1.34449 * 124.92783 * 60.01412 * 20 17 15 29 29 H 1.09010 * 109.46730 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47540 * 299.99332 * 1 2 3 31 31 H 1.08998 * 109.47126 * 60.00229 * 1 2 3 32 32 H 1.09000 * 109.46969 * 65.30276 * 5 3 2 33 33 H 1.09004 * 109.47174 * 305.31236 * 5 3 2 34 34 H 0.96998 * 120.00762 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.46829 * 59.98825 * 19 17 15 36 36 H 1.08998 * 109.47245 * 179.97438 * 19 17 15 37 37 H 1.08995 * 109.47221 * 299.99486 * 19 17 15 38 38 H 1.07993 * 126.90649 * 0.02562 * 21 20 17 39 39 H 1.07994 * 120.14363 * 0.28922 * 23 22 21 40 40 H 1.07998 * 119.79034 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.65586 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.09233 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 7 3.9818 2.6741 0.1282 7 6 4.2801 3.1907 1.3625 8 1 3.9798 4.1974 1.6135 9 6 4.9686 2.4193 2.2907 10 7 4.7364 2.5734 3.5748 11 14 6.2246 1.1630 1.7130 12 1 7.5780 1.7739 1.7261 13 1 6.2031 -0.0120 2.6208 14 1 5.8911 0.7283 0.3327 15 6 4.0708 3.4532 -0.9680 16 8 3.8819 2.9772 -2.0674 17 6 4.4052 4.9159 -0.8275 18 1 5.0880 5.0538 0.0109 19 6 3.1221 5.7106 -0.5762 20 6 5.0594 5.4056 -2.0937 21 6 6.2890 5.9330 -2.1674 22 6 6.5087 6.2629 -3.5808 23 6 7.5641 6.8236 -4.2983 24 6 7.4443 7.0073 -5.6480 25 6 6.2795 6.6397 -6.3063 26 6 5.2255 6.0838 -5.6134 27 6 5.3266 5.8885 -4.2415 28 8 4.4919 5.3816 -3.3123 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9519 0.8652 -0.9329 33 1 3.9599 0.7011 0.8395 34 1 5.2173 2.0352 4.2228 35 1 2.6488 5.3563 0.3394 36 1 3.3640 6.7685 -0.4741 37 1 2.4395 5.5730 -1.4147 38 1 6.9803 6.0831 -1.3514 39 1 8.4727 7.1114 -3.7905 40 1 8.2614 7.4412 -6.2052 41 1 6.1979 6.7906 -7.3726 42 1 4.3234 5.8007 -6.1355 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176438072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:15 Heat of formation + Delta-G solvation = -90.999147 kcal Electronic energy + Delta-G solvation = -28612.626127 eV Core-core repulsion = 24524.556579 eV Total energy + Delta-G solvation = -4088.069547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.44173 -41.73296 -40.54537 -38.76460 -37.59146 -36.75443 -35.23633 -34.07776 -33.30004 -31.29253 -30.57277 -29.55103 -28.00543 -26.99097 -25.44554 -23.86474 -23.08817 -22.46330 -21.95024 -20.87937 -19.40269 -18.90719 -18.41192 -18.22912 -17.50996 -17.35909 -17.18816 -17.09018 -16.90128 -16.31532 -15.76425 -15.56492 -15.04144 -14.92358 -14.71804 -14.60027 -14.52913 -14.19587 -14.14751 -13.95272 -13.33085 -13.22891 -13.11777 -13.02722 -12.98802 -12.81617 -12.64802 -12.49979 -12.47748 -11.96090 -11.83223 -11.80731 -11.63281 -11.21562 -11.06017 -10.57580 -9.88949 -9.53788 -9.08164 -8.61778 -6.17727 -0.02686 0.44770 1.12362 1.25222 1.32476 1.34313 1.43502 1.48593 1.75635 1.99566 2.17877 2.48461 2.81187 2.89148 3.35658 3.76152 3.84363 3.92862 4.04285 4.06699 4.12704 4.16107 4.19754 4.23925 4.28231 4.29230 4.39239 4.47873 4.57982 4.62360 4.70960 4.78995 4.86490 4.96627 5.10397 5.19886 5.29007 5.30198 5.38561 5.51613 5.53005 5.84421 5.99277 6.14355 6.29805 6.70690 6.87183 7.24274 7.61345 8.51335 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.003939 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.006176 B = 7106.490536 C = 8198.868135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.450 3.550 4 O -0.524 6.524 5 C 0.114 3.886 6 N -0.449 5.449 7 C -0.369 4.369 8 H 0.090 0.910 9 C 0.050 3.950 10 N -0.864 5.864 11 Si 0.898 3.102 12 H -0.268 1.268 13 H -0.267 1.267 14 H -0.250 1.250 15 C 0.491 3.509 16 O -0.605 6.605 17 C -0.020 4.020 18 H 0.142 0.858 19 C -0.123 4.123 20 C 0.049 3.951 21 C -0.212 4.212 22 C -0.150 4.150 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.088 4.088 26 C -0.127 4.127 27 C 0.015 3.985 28 O -0.201 6.201 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.285 0.715 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 3.432 -11.438 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.292 3.708 4 O -0.412 6.412 5 C -0.011 4.011 6 N -0.170 5.170 7 C -0.495 4.495 8 H 0.107 0.893 9 C -0.159 4.159 10 N -0.497 5.497 11 Si 0.720 3.280 12 H -0.194 1.194 13 H -0.192 1.192 14 H -0.174 1.174 15 C 0.282 3.718 16 O -0.489 6.489 17 C -0.041 4.041 18 H 0.159 0.841 19 C -0.181 4.181 20 C 0.001 3.999 21 C -0.231 4.231 22 C -0.151 4.151 23 C -0.097 4.097 24 C -0.152 4.152 25 C -0.105 4.105 26 C -0.145 4.145 27 C -0.033 4.033 28 O -0.103 6.103 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.197 0.803 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.187 0.813 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.819 3.321 -11.791 12.570 hybrid contribution -0.018 -0.663 0.617 0.906 sum 2.801 2.658 -11.174 11.823 Atomic orbital electron populations 1.23545 0.74937 1.05833 1.02133 1.86489 1.25111 1.32445 1.84103 1.24764 0.93043 0.81624 0.71397 1.90583 1.67339 1.37504 1.45807 1.21448 0.86821 0.87512 1.05316 1.43308 1.58312 1.08417 1.06946 1.18889 1.39172 1.02805 0.88590 0.89282 1.25800 0.97197 0.98608 0.94279 1.69974 1.36978 1.40298 1.02482 0.86561 0.81357 0.79784 0.80335 1.19385 1.19156 1.17416 1.20692 0.78567 0.89320 0.83223 1.90569 1.55320 1.75991 1.27064 1.19882 1.00654 0.91345 0.92190 0.84085 1.21551 0.94328 1.00375 1.01836 1.21988 0.93603 1.00039 0.84294 1.22538 0.96687 1.07283 0.96561 1.20247 0.96411 1.05014 0.93379 1.20658 0.97176 0.97173 0.94723 1.21221 0.99124 1.01113 0.93733 1.21371 0.91567 0.96240 1.01365 1.20330 1.02264 1.04047 0.87890 1.20363 0.90162 1.00340 0.92390 1.84006 1.42272 1.68061 1.15931 0.84154 0.92418 0.92442 0.86595 0.86707 0.90510 0.91661 0.88966 0.93766 0.80318 0.83326 0.81694 0.81270 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.37 -13.25 10.57 -51.41 -0.54 -13.80 16 3 C 0.45 19.84 7.99 71.24 0.57 20.41 16 4 O -0.52 -26.07 16.00 21.96 0.35 -25.72 16 5 C 0.11 5.05 4.18 85.63 0.36 5.41 16 6 N -0.45 -21.56 1.69 -639.60 -1.08 -22.64 16 7 C -0.37 -18.36 8.50 84.04 0.71 -17.65 16 8 H 0.09 4.67 6.49 -2.91 -0.02 4.65 16 9 C 0.05 2.44 5.03 84.93 0.43 2.87 16 10 N -0.86 -44.51 13.96 21.66 0.30 -44.21 16 11 Si 0.90 37.17 26.35 68.60 1.81 38.98 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 13 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 14 H -0.25 -10.13 5.88 99.48 0.58 -9.55 16 15 C 0.49 23.67 6.47 87.65 0.57 24.24 16 16 O -0.60 -32.06 15.42 9.64 0.15 -31.91 16 17 C -0.02 -0.82 2.32 -12.29 -0.03 -0.85 16 18 H 0.14 5.47 6.83 -2.39 -0.02 5.45 16 19 C -0.12 -4.67 9.06 71.98 0.65 -4.02 16 20 C 0.05 1.94 5.40 24.72 0.13 2.08 16 21 C -0.21 -7.24 10.97 23.54 0.26 -6.98 16 22 C -0.15 -4.84 6.40 -20.21 -0.13 -4.97 16 23 C -0.08 -1.89 10.05 22.20 0.22 -1.67 16 24 C -0.13 -2.51 9.98 22.04 0.22 -2.29 16 25 C -0.09 -1.73 10.01 22.30 0.22 -1.51 16 26 C -0.13 -3.50 10.07 22.35 0.23 -3.28 16 27 C 0.01 0.52 7.42 22.99 0.17 0.69 16 28 O -0.20 -8.53 9.93 3.86 0.04 -8.49 16 29 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.12 4.90 7.52 -2.39 -0.02 4.89 16 33 H 0.12 4.81 4.73 -2.38 -0.01 4.80 16 34 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 35 H 0.06 2.64 7.38 -2.39 -0.02 2.62 16 36 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.18 5.04 8.06 -2.91 -0.02 5.01 16 39 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -70.68 360.63 7.74 -62.94 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.93 Total: 30.38 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.78 Total: 14.47 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.78 Total: -66.85 kcal Atomic # 8 Polarization: -79.92 SS G_CDS: 0.00 Total: -79.92 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 1.81 Total: 38.98 kcal Total: -70.68 7.74 -62.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176438072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.058 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds