Wall clock time and date at job start Tue Mar 31 2020 16:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 H 1.09001 * 109.46773 * 305.00267 * 3 2 1 5 5 C 1.50698 * 109.47432 * 185.00212 * 3 2 1 6 6 H 1.08003 * 119.99850 * 239.99733 * 5 3 2 7 7 C 1.37873 * 120.00104 * 59.99975 * 5 3 2 8 8 N 1.31516 * 120.00275 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00065 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47235 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47448 * 119.99637 * 9 7 5 12 12 H 1.48498 * 109.47128 * 239.99939 * 9 7 5 13 13 N 1.46500 * 109.47146 * 64.99779 * 3 2 1 14 14 C 1.34779 * 120.00169 * 275.00181 * 13 3 2 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 3 17 17 O 1.42905 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.35749 * 116.99982 * 180.02562 * 17 16 14 19 19 C 1.39372 * 119.72669 * 359.72483 * 18 17 16 20 20 C 1.36458 * 120.42673 * 179.71833 * 19 18 17 21 21 C 1.39969 * 119.79511 * 0.55443 * 20 19 18 22 22 C 1.46431 * 120.98057 * 179.72751 * 21 20 19 23 23 C 1.35852 * 118.19407 * 179.97438 * 22 21 20 24 24 C 1.41000 * 119.81768 * 359.97438 * 23 22 21 25 25 O 1.21798 * 119.15275 * 179.97438 * 24 23 22 26 26 O 1.34226 * 121.69246 * 0.02613 * 24 23 22 27 27 C 1.35025 * 121.46544 * 359.97438 * 26 24 23 28 28 C 1.38512 * 119.72647 * 179.97438 * 18 17 16 29 29 H 1.09006 * 109.46635 * 300.00068 * 1 2 3 30 30 H 1.08995 * 109.47240 * 60.00201 * 1 2 3 31 31 H 1.08996 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47485 * 240.00138 * 2 1 3 33 33 H 1.09007 * 109.47568 * 119.99535 * 2 1 3 34 34 H 0.96999 * 120.00152 * 180.02562 * 8 7 5 35 35 H 0.96996 * 119.99986 * 95.00778 * 13 3 2 36 36 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 37 37 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 38 38 H 1.08001 * 119.78141 * 359.97438 * 19 18 17 39 39 H 1.08008 * 120.10038 * 180.29351 * 20 19 18 40 40 H 1.07999 * 120.90448 * 359.94872 * 22 21 20 41 41 H 1.07993 * 120.09196 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.10909 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1937 11 1 6.4962 -0.5189 -1.4627 12 1 6.3999 1.6157 -2.6092 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4344 16 6 0.0367 3.3387 2.6544 17 8 -1.2890 3.8577 2.5299 18 6 -1.8030 4.5007 3.6093 19 6 -1.0403 4.6219 4.7695 20 6 -1.5407 5.2703 5.8609 21 6 -2.8326 5.8073 5.8191 22 6 -3.3975 6.5030 6.9772 23 6 -4.6566 7.0026 6.8744 24 6 -5.3785 6.8427 5.6738 25 8 -6.5067 7.2950 5.5951 26 8 -4.8549 6.2039 4.6158 27 6 -3.6093 5.6840 4.6521 28 6 -3.0831 5.0265 3.5502 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8293 -0.0618 -2.9495 35 1 2.2719 2.1233 1.9977 36 1 0.7281 4.1543 2.8666 37 1 0.0680 2.6147 3.4686 38 1 -0.0452 4.2034 4.8034 39 1 -0.9432 5.3653 6.7556 40 1 -2.8288 6.6155 7.8884 41 1 -5.1034 7.5209 7.7099 42 1 -3.6696 4.9247 2.6491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183898540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:00 Heat of formation + Delta-G solvation = -100.356472 kcal Electronic energy + Delta-G solvation = -26924.297507 eV Core-core repulsion = 22835.822196 eV Total energy + Delta-G solvation = -4088.475311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19439 -40.46593 -39.08806 -38.20834 -36.98468 -35.16509 -34.54011 -32.57106 -31.55529 -31.11897 -29.80373 -28.46402 -26.73058 -24.68581 -24.45101 -23.33582 -23.06075 -20.83268 -19.84151 -19.52585 -18.59989 -17.98962 -17.55589 -17.07429 -17.00321 -16.44521 -15.97501 -15.70364 -15.47933 -15.13310 -14.52455 -14.51399 -14.47113 -14.18355 -14.03599 -13.59892 -13.33500 -12.82874 -12.77283 -12.62281 -12.35968 -12.18824 -11.74549 -11.57778 -11.43014 -11.34423 -11.04714 -10.92370 -10.64179 -10.42795 -10.39436 -10.28835 -9.72182 -9.24209 -9.21340 -9.13257 -8.60049 -8.42963 -8.00403 -6.21314 -4.31596 -0.12373 0.63006 1.19032 1.89470 2.47939 2.73907 3.09982 3.17576 3.25980 3.27649 3.30065 3.77035 3.93165 3.99294 4.07573 4.28170 4.31397 4.47301 4.72540 4.78438 4.96506 4.98616 5.10409 5.20137 5.24839 5.28542 5.34644 5.61370 5.71851 5.77403 5.90300 6.31502 6.36908 6.56914 6.83829 6.88488 6.94390 7.10913 7.15974 7.23045 7.29636 7.51328 7.61053 7.78607 8.07644 8.46089 8.65398 8.92224 9.35776 10.83983 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.002018 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.052856 B =13871.676809 C =14410.908768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.522 6.522 16 C 0.034 3.966 17 O -0.273 6.273 18 C 0.199 3.801 19 C -0.230 4.230 20 C -0.009 4.009 21 C -0.209 4.209 22 C 0.017 3.983 23 C -0.266 4.266 24 C 0.510 3.490 25 O -0.469 6.469 26 O -0.269 6.269 27 C 0.190 3.810 28 C -0.177 4.177 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.390 0.610 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 8.956 20.147 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.352 5.352 14 C 0.284 3.716 15 O -0.399 6.399 16 C -0.045 4.045 17 O -0.183 6.183 18 C 0.150 3.850 19 C -0.248 4.248 20 C -0.027 4.027 21 C -0.210 4.210 22 C -0.001 4.001 23 C -0.285 4.285 24 C 0.360 3.640 25 O -0.357 6.357 26 O -0.181 6.181 27 C 0.145 3.855 28 C -0.196 4.196 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.042 8.980 18.840 22.366 hybrid contribution 1.563 -0.032 0.601 1.675 sum -6.479 8.948 19.441 22.361 Atomic orbital electron populations 1.21848 0.98253 0.98242 1.01227 1.21956 0.92651 0.99659 1.02466 1.18864 0.94382 0.89199 0.80463 0.93098 1.21226 0.90472 1.39331 1.06440 0.91942 1.24893 0.98722 0.94728 0.95350 1.69897 1.35147 1.37347 1.09336 0.86383 0.84664 0.77822 0.78158 1.19750 1.20837 1.20843 1.46403 1.13823 1.55972 1.19015 1.19694 0.83589 0.80304 0.88030 1.90748 1.50954 1.58481 1.39697 1.22858 0.82438 0.99446 0.99711 1.86213 1.30719 1.67313 1.34102 1.18872 0.91368 0.88651 0.86080 1.21154 1.02424 1.07498 0.93763 1.20658 0.92272 0.91758 0.98039 1.19013 0.97292 1.10032 0.94653 1.22789 0.93592 0.87480 0.96281 1.22480 0.97077 1.09540 0.99390 1.19244 0.86546 0.76314 0.81936 1.90989 1.17943 1.45015 1.81739 1.83561 1.28889 1.61867 1.43745 1.18520 0.81252 0.92368 0.93371 1.19502 0.95103 1.05357 0.99633 0.94427 0.93047 0.95676 0.88113 0.94916 0.92483 0.77806 0.88857 0.88960 0.83833 0.83896 0.83023 0.82069 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.38 2.24 -69.08 -0.15 6.23 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.28 8.73 -34.44 -0.30 -13.58 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -23.73 11.29 55.43 0.63 -23.10 16 9 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 N -0.70 -12.83 5.02 -54.93 -0.28 -13.11 16 14 C 0.50 8.84 6.48 -10.99 -0.07 8.77 16 15 O -0.52 -11.62 13.64 -14.35 -0.20 -11.81 16 16 C 0.03 0.40 5.21 36.01 0.19 0.59 16 17 O -0.27 -3.73 9.65 -38.87 -0.38 -4.10 16 18 C 0.20 2.15 6.69 -39.06 -0.26 1.89 16 19 C -0.23 -1.76 8.96 -39.80 -0.36 -2.12 16 20 C -0.01 -0.06 9.78 -39.58 -0.39 -0.44 16 21 C -0.21 -1.64 5.87 -105.01 -0.62 -2.26 16 22 C 0.02 0.10 10.12 -37.14 -0.38 -0.28 16 23 C -0.27 -2.03 9.93 -39.39 -0.39 -2.42 16 24 C 0.51 6.01 7.89 31.78 0.25 6.26 16 25 O -0.47 -7.03 17.91 -19.60 -0.35 -7.38 16 26 O -0.27 -3.30 9.82 -20.81 -0.20 -3.51 16 27 C 0.19 2.01 6.76 -38.48 -0.26 1.75 16 28 C -0.18 -1.97 9.94 -39.32 -0.39 -2.36 16 29 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.39 5.80 8.54 -40.82 -0.35 5.45 16 36 H 0.09 0.83 7.65 -51.93 -0.40 0.43 16 37 H 0.09 0.81 7.63 -51.93 -0.40 0.41 16 38 H 0.14 0.78 6.24 -52.49 -0.33 0.45 16 39 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 41 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.15 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -32.88 357.68 -8.41 -41.29 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.95 Total: 3.75 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.05 Total: -2.10 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.35 Total: -36.21 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.13 Total: -26.80 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.88 -8.41 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183898540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.070 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds