Wall clock time and date at job start Tue Mar 31 2020 16:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 N 1.46503 * 109.46789 * 179.97438 * 17 16 14 19 19 C 1.34526 * 124.46240 * 269.69882 * 18 17 16 20 20 O 1.21446 * 125.70926 * 0.04295 * 19 18 17 21 21 C 1.47813 * 108.58074 * 179.90873 * 19 18 17 22 22 C 1.38565 * 134.30248 * 180.13199 * 21 19 18 23 23 C 1.38610 * 119.72219 * 180.28753 * 22 21 19 24 24 C 1.38224 * 120.45919 * 359.95544 * 23 22 21 25 25 C 1.38610 * 120.45931 * 0.02562 * 24 23 22 26 26 C 1.38566 * 119.72418 * 0.02562 * 25 24 23 27 27 C 1.34525 * 124.45642 * 90.00579 * 18 17 16 28 28 O 1.21446 * 125.71347 * 359.94480 * 27 18 17 29 29 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 31 31 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 36 36 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 37 37 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 38 38 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 39 39 H 1.08005 * 120.13372 * 0.23854 * 22 21 19 40 40 H 1.08000 * 119.76724 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.76890 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.14010 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 5.4542 0.8753 1.3334 9 14 3.0961 0.1164 2.5740 10 1 2.8687 -1.3195 2.2711 11 1 3.7966 0.2424 3.8773 12 1 1.7904 0.8204 2.6439 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 7 -1.8135 4.7373 -3.4765 19 6 -1.5579 6.0250 -3.7701 20 8 -0.9249 6.7975 -3.0791 21 6 -2.1736 6.3415 -5.0761 22 6 -2.2371 7.4781 -5.8661 23 6 -2.9204 7.4400 -7.0715 24 6 -3.5375 6.2763 -7.4906 25 6 -3.4820 5.1315 -6.7111 26 6 -2.8034 5.1550 -5.5032 27 6 -2.5439 4.1560 -4.4451 28 8 -2.9264 3.0033 -4.4495 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 5.8773 0.4775 2.1104 35 1 0.7243 4.1969 -2.7809 36 1 -0.0713 2.6985 -3.3193 37 1 -2.0783 3.2846 -1.9868 38 1 -1.2831 4.7831 -1.4481 39 1 -1.7568 8.3902 -5.5435 40 1 -2.9707 8.3256 -7.6876 41 1 -4.0665 6.2589 -8.4319 42 1 -3.9664 4.2251 -7.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187940332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:18 Heat of formation + Delta-G solvation = -122.301953 kcal Electronic energy + Delta-G solvation = -27624.769552 eV Core-core repulsion = 23535.342613 eV Total energy + Delta-G solvation = -4089.426939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.48059 -41.61735 -39.86177 -39.49852 -38.06107 -37.13047 -35.58704 -34.51241 -33.91487 -32.10166 -31.49411 -29.81613 -27.00429 -26.24731 -24.87197 -23.86744 -23.24796 -22.73544 -21.45694 -20.92990 -19.41609 -18.88000 -18.75607 -18.27705 -17.94703 -17.68366 -17.29029 -16.94399 -16.47859 -16.28263 -15.60138 -15.49126 -15.40729 -15.25636 -15.09019 -15.01192 -14.88816 -14.15230 -13.98654 -13.88923 -13.62508 -13.47000 -13.22640 -13.20828 -13.14933 -12.69668 -12.61458 -12.55832 -12.06056 -11.75587 -11.63221 -11.55767 -11.49955 -11.36513 -11.21299 -11.10641 -10.77448 -10.19881 -10.19285 -8.47568 -6.56528 -1.03752 0.00530 0.96308 0.99700 1.16456 1.21297 1.28744 1.38586 1.69122 1.97880 2.16984 2.55737 2.63634 2.84401 3.16868 3.42228 3.60701 3.64251 3.73236 4.06619 4.07801 4.13127 4.14850 4.15311 4.20673 4.27133 4.31137 4.32752 4.51153 4.54838 4.63585 4.86943 4.90977 4.92563 4.95593 5.00119 5.24031 5.29177 5.30056 5.31961 5.47697 5.61239 5.72179 6.02172 6.10525 6.43335 6.47300 6.79212 7.08076 8.68424 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.002480 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.427659 B =11285.978684 C =11759.466176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.147 4.147 3 C 0.200 3.800 4 H 0.033 0.967 5 C -0.542 4.542 6 H 0.045 0.955 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.939 3.061 10 H -0.250 1.250 11 H -0.283 1.283 12 H -0.254 1.254 13 O -0.353 6.353 14 C 0.459 3.541 15 O -0.532 6.532 16 C -0.121 4.121 17 C 0.129 3.871 18 N -0.579 5.579 19 C 0.570 3.430 20 O -0.491 6.491 21 C -0.158 4.158 22 C -0.045 4.045 23 C -0.082 4.082 24 C -0.082 4.082 25 C -0.043 4.043 26 C -0.158 4.158 27 C 0.572 3.428 28 O -0.488 6.488 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.276 0.724 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.154 0.846 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.869 12.474 -21.013 33.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.146 3.854 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.063 0.937 7 C -0.169 4.169 8 N -0.568 5.568 9 Si 0.763 3.237 10 H -0.175 1.175 11 H -0.210 1.210 12 H -0.178 1.178 13 O -0.269 6.269 14 C 0.303 3.697 15 O -0.422 6.422 16 C -0.160 4.160 17 C 0.008 3.992 18 N -0.320 5.320 19 C 0.362 3.638 20 O -0.364 6.364 21 C -0.162 4.162 22 C -0.063 4.063 23 C -0.100 4.100 24 C -0.099 4.099 25 C -0.062 4.062 26 C -0.161 4.161 27 C 0.364 3.636 28 O -0.361 6.361 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.171 0.829 40 H 0.198 0.802 41 H 0.198 0.802 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.711 12.150 -20.143 32.698 hybrid contribution 0.552 -0.599 1.380 1.602 sum -22.159 11.552 -18.763 31.249 Atomic orbital electron populations 1.21820 0.94389 1.02116 1.01512 1.22272 0.96604 0.97317 1.02213 1.20711 0.93980 0.89904 0.80840 0.94882 1.20982 0.89737 1.40110 1.07163 0.93680 1.25580 0.96133 0.95503 0.99731 1.69960 1.10378 1.45396 1.31027 0.85997 0.79324 0.80312 0.78036 1.17491 1.20970 1.17842 1.86487 1.36088 1.62961 1.41405 1.23692 0.79505 0.76131 0.90365 1.90609 1.55596 1.59150 1.36867 1.21617 0.98272 1.01749 0.94331 1.21374 0.94782 0.98467 0.84547 1.46622 1.50315 1.13216 1.21864 1.18919 0.77941 0.80604 0.86366 1.90820 1.37589 1.52179 1.55849 1.20457 1.03323 0.97264 0.95152 1.21178 0.95815 0.96295 0.93044 1.21964 0.93476 1.00214 0.94300 1.21971 0.96780 0.90778 1.00390 1.21184 0.94176 1.00897 0.89928 1.20464 1.04552 0.93400 0.97705 1.18862 0.75819 0.86794 0.82156 1.90809 1.49697 1.17831 1.77806 0.90685 0.93220 0.93403 0.90892 0.92149 0.91498 0.86483 0.85829 0.87378 0.87909 0.82856 0.80230 0.80158 0.82633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.57 71.98 0.62 -4.71 16 2 C -0.15 -6.55 5.15 30.60 0.16 -6.39 16 3 C 0.20 10.23 1.84 29.85 0.05 10.29 16 4 H 0.03 1.79 6.20 -2.39 -0.01 1.77 16 5 C -0.54 -32.45 9.48 25.60 0.24 -32.21 16 6 H 0.04 2.98 8.06 -2.92 -0.02 2.96 16 7 C 0.03 1.79 5.45 84.66 0.46 2.25 16 8 N -0.93 -57.70 13.96 21.45 0.30 -57.40 16 9 Si 0.94 44.78 24.42 68.60 1.68 46.45 16 10 H -0.25 -10.98 6.82 99.48 0.68 -10.30 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.25 -11.82 6.53 99.48 0.65 -11.17 16 13 O -0.35 -16.45 9.81 -51.45 -0.50 -16.95 16 14 C 0.46 17.92 6.41 71.24 0.46 18.37 16 15 O -0.53 -22.31 13.12 21.97 0.29 -22.03 16 16 C -0.12 -3.51 6.14 29.85 0.18 -3.33 16 17 C 0.13 3.44 5.04 86.38 0.44 3.88 16 18 N -0.58 -14.06 2.62 -762.96 -2.00 -16.06 16 19 C 0.57 13.67 8.02 86.82 0.70 14.37 16 20 O -0.49 -14.57 17.67 -3.55 -0.06 -14.64 16 21 C -0.16 -2.68 6.41 -20.00 -0.13 -2.81 16 22 C -0.04 -0.43 10.09 22.44 0.23 -0.20 16 23 C -0.08 -0.24 10.04 22.36 0.22 -0.01 16 24 C -0.08 -0.22 10.04 22.36 0.22 0.01 16 25 C -0.04 -0.39 10.09 22.44 0.23 -0.16 16 26 C -0.16 -2.61 6.41 -20.00 -0.13 -2.74 16 27 C 0.57 13.25 8.02 86.82 0.70 13.95 16 28 O -0.49 -13.66 17.68 -3.55 -0.06 -13.72 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.05 1.94 7.80 -2.39 -0.02 1.92 16 31 H 0.05 1.76 6.06 -2.39 -0.01 1.74 16 32 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.06 2.73 3.23 -2.39 -0.01 2.73 16 34 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.12 3.19 8.14 -2.39 -0.02 3.18 16 37 H 0.11 2.87 7.92 -2.39 -0.02 2.85 16 38 H 0.10 2.86 7.91 -2.39 -0.02 2.84 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.18 -0.76 8.06 -2.91 -0.02 -0.78 16 41 H 0.18 -0.83 8.06 -2.91 -0.02 -0.85 16 42 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -78.89 357.21 5.25 -73.64 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.98 Total: 10.16 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.65 Total: 10.55 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.70 Total: -73.47 kcal Atomic # 8 Polarization: -66.99 SS G_CDS: -0.34 Total: -67.33 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.68 Total: 46.45 kcal Total: -78.89 5.25 -73.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187940332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.664 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds