Wall clock time and date at job start Tue Mar 31 2020 16:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 N 1.46501 * 109.47079 * 179.97438 * 16 14 13 18 18 C 1.34527 * 124.46015 * 269.70015 * 17 16 14 19 19 O 1.21442 * 125.70851 * 0.02562 * 18 17 16 20 20 C 1.47821 * 108.57836 * 179.90621 * 18 17 16 21 21 C 1.38562 * 134.29801 * 180.10481 * 20 18 17 22 22 C 1.38603 * 119.72183 * 180.29102 * 21 20 18 23 23 C 1.38228 * 120.45673 * 359.97438 * 22 21 20 24 24 C 1.50708 * 119.76887 * 180.02562 * 23 22 21 25 25 C 1.38609 * 120.46119 * 359.97438 * 23 22 21 26 26 C 1.38563 * 119.71948 * 0.02562 * 25 23 22 27 27 C 1.34521 * 124.45878 * 90.00088 * 17 16 14 28 28 O 1.21450 * 125.71003 * 359.96383 * 27 17 16 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 36 36 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 37 37 H 1.08003 * 120.14025 * 0.31649 * 21 20 18 38 38 H 1.08001 * 119.77712 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47252 * 269.97792 * 24 23 22 40 40 H 1.09002 * 109.47292 * 29.97799 * 24 23 22 41 41 H 1.09004 * 109.46961 * 149.97700 * 24 23 22 42 42 H 1.08003 * 120.14167 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 7 -1.3033 4.0321 -2.2698 18 6 -2.4798 3.4169 -2.4870 19 8 -2.6215 2.2856 -2.9051 20 6 -3.5710 4.3475 -2.1288 21 6 -4.9543 4.2678 -2.1423 22 6 -5.7094 5.3567 -1.7358 23 6 -5.0919 6.5203 -1.3169 24 6 -5.9281 7.6947 -0.8777 25 6 -3.7092 6.6142 -1.2971 26 6 -2.9414 5.5336 -1.7007 27 6 -1.4888 5.2826 -1.8101 28 8 -0.6099 6.0729 -1.5308 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 0.7243 4.1969 -2.7809 36 1 -0.0713 2.6985 -3.3193 37 1 -5.4421 3.3609 -2.4679 38 1 -6.7876 5.2957 -1.7464 39 1 -6.1402 8.3313 -1.7367 40 1 -6.8648 7.3349 -0.4519 41 1 -5.3839 8.2674 -0.1266 42 1 -3.2321 7.5257 -0.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188112446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:42 Heat of formation + Delta-G solvation = -107.322355 kcal Electronic energy + Delta-G solvation = -28162.683554 eV Core-core repulsion = 24073.906179 eV Total energy + Delta-G solvation = -4088.777375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49512 -39.73367 -38.89333 -38.69992 -36.18757 -35.64487 -33.63106 -33.44221 -31.81864 -31.36251 -29.58227 -27.54744 -26.89199 -24.99108 -23.71451 -23.05486 -21.83902 -21.26469 -19.97589 -19.47312 -17.83730 -17.60940 -17.47348 -16.67348 -16.26209 -16.08680 -15.61162 -15.36765 -15.25656 -14.98801 -14.41713 -14.36393 -14.31695 -14.13485 -14.03289 -13.17887 -12.85186 -12.76091 -12.71822 -12.54707 -12.40941 -11.96395 -11.87781 -11.46659 -11.36358 -11.20631 -10.95440 -10.74369 -10.67070 -10.45070 -10.42297 -10.30350 -9.79062 -9.60323 -9.51333 -9.39171 -9.25308 -8.83848 -8.46107 -6.18871 -4.26306 -0.17009 0.63916 1.78996 2.02496 2.79251 2.83561 3.25369 3.26821 3.30098 3.32540 3.40782 3.63351 4.09837 4.27819 4.32553 4.33958 4.65489 4.70406 4.89359 5.02590 5.10424 5.12895 5.13382 5.16441 5.23863 5.42735 5.54450 5.59959 5.62664 5.72382 5.91824 6.24019 6.25258 6.30525 6.45649 6.50324 6.85639 6.95431 7.08203 7.15814 7.20632 7.51137 7.60036 7.71913 7.90281 8.13321 8.53674 8.84120 9.38563 10.87940 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.002832 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.183887 B = 9884.656108 C =10288.919080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.350 6.350 14 C 0.440 3.560 15 O -0.507 6.507 16 C 0.116 3.884 17 N -0.562 5.562 18 C 0.580 3.420 19 O -0.457 6.457 20 C -0.139 4.139 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.064 4.064 24 C -0.119 4.119 25 C -0.047 4.047 26 C -0.127 4.127 27 C 0.579 3.421 28 O -0.456 6.456 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.109 0.891 34 H 0.267 0.733 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 12.226 -9.689 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.265 6.265 14 C 0.280 3.720 15 O -0.396 6.396 16 C -0.006 4.006 17 N -0.304 5.304 18 C 0.369 3.631 19 O -0.328 6.328 20 C -0.143 4.143 21 C -0.059 4.059 22 C -0.119 4.119 23 C -0.065 4.065 24 C -0.175 4.175 25 C -0.066 4.066 26 C -0.130 4.130 27 C 0.368 3.632 28 O -0.326 6.326 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.993 11.864 -9.261 24.233 hybrid contribution 1.017 -0.269 0.346 1.108 sum -17.975 11.595 -8.915 23.174 Atomic orbital electron populations 1.21849 0.98293 0.99112 1.00665 1.22022 0.92638 0.99206 1.03439 1.20746 0.95114 0.88767 0.78310 0.93465 1.20994 0.89481 1.39310 1.06275 0.91261 1.24894 0.99331 0.94696 0.95014 1.69887 1.35524 1.37796 1.09337 0.86316 0.83736 0.78514 0.77475 1.19949 1.21025 1.19896 1.86459 1.33300 1.62185 1.44585 1.23244 0.81669 0.77653 0.89384 1.90641 1.55455 1.58101 1.35390 1.21128 0.82755 1.00323 0.96404 1.46083 1.07974 1.15376 1.60974 1.18307 0.82909 0.85817 0.76056 1.90817 1.85141 1.16571 1.40269 1.20494 0.94622 0.95018 1.04164 1.20764 0.90625 0.99127 0.95352 1.21305 1.00583 0.92014 0.97955 1.20183 0.93251 0.96171 0.96846 1.20892 0.99350 0.95303 1.01970 1.20652 0.92344 0.97433 0.96124 1.20492 0.93285 0.96033 1.03221 1.18305 0.88880 0.80803 0.75202 1.90828 1.49373 1.48619 1.43757 0.93001 0.94964 0.94710 0.93834 0.87282 0.92294 0.84701 0.84798 0.83923 0.84121 0.90293 0.90737 0.90707 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.57 37.16 0.32 -2.95 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 6.03 2.25 -27.88 -0.06 5.97 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.77 8.90 -34.44 -0.31 -15.08 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.37 11.31 55.43 0.63 -24.74 16 9 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.35 -8.37 9.81 -39.27 -0.39 -8.75 16 14 C 0.44 9.39 6.48 36.00 0.23 9.62 16 15 O -0.51 -12.18 13.57 -18.75 -0.25 -12.43 16 16 C 0.12 1.81 6.34 -5.19 -0.03 1.78 16 17 N -0.56 -8.75 2.11 -118.91 -0.25 -9.00 16 18 C 0.58 8.77 8.02 -12.45 -0.10 8.67 16 19 O -0.46 -7.83 17.67 5.42 0.10 -7.73 16 20 C -0.14 -1.69 6.40 -104.83 -0.67 -2.36 16 21 C -0.04 -0.35 10.09 -39.33 -0.40 -0.75 16 22 C -0.10 -0.66 9.68 -39.45 -0.38 -1.04 16 23 C -0.06 -0.44 5.89 -104.49 -0.62 -1.06 16 24 C -0.12 -0.47 10.00 36.01 0.36 -0.11 16 25 C -0.05 -0.43 9.74 -39.32 -0.38 -0.81 16 26 C -0.13 -1.55 6.41 -104.83 -0.67 -2.23 16 27 C 0.58 8.86 8.02 -12.46 -0.10 8.76 16 28 O -0.46 -7.96 17.68 5.41 0.10 -7.86 16 29 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 30 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.99 5.96 -51.93 -0.31 2.68 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.14 1.79 7.97 -51.93 -0.41 1.38 16 36 H 0.13 1.76 7.96 -51.93 -0.41 1.34 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.21 8.08 -51.93 -0.42 -0.20 16 41 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 42 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -34.58 364.34 -7.80 -42.38 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.15 Total: -0.08 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -3.05 Total: 6.49 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.38 Total: -33.74 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.45 Total: -36.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.58 -7.80 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188112446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.939 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds