Wall clock time and date at job start Tue Mar 31 2020 16:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 N 1.46501 * 109.47079 * 179.97438 * 16 14 13 18 18 C 1.34527 * 124.46015 * 269.70015 * 17 16 14 19 19 O 1.21442 * 125.70851 * 0.02562 * 18 17 16 20 20 C 1.47821 * 108.57836 * 179.90621 * 18 17 16 21 21 C 1.38562 * 134.29801 * 180.10481 * 20 18 17 22 22 C 1.38603 * 119.72183 * 180.29102 * 21 20 18 23 23 C 1.38228 * 120.45673 * 359.97438 * 22 21 20 24 24 C 1.50708 * 119.76887 * 180.02562 * 23 22 21 25 25 C 1.38609 * 120.46119 * 359.97438 * 23 22 21 26 26 C 1.38563 * 119.71948 * 0.02562 * 25 23 22 27 27 C 1.34521 * 124.45878 * 90.00088 * 17 16 14 28 28 O 1.21450 * 125.71003 * 359.96383 * 27 17 16 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 36 36 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 37 37 H 1.08003 * 120.14025 * 0.31649 * 21 20 18 38 38 H 1.08001 * 119.77712 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47252 * 269.97792 * 24 23 22 40 40 H 1.09002 * 109.47292 * 29.97799 * 24 23 22 41 41 H 1.09004 * 109.46961 * 149.97700 * 24 23 22 42 42 H 1.08003 * 120.14167 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 7 -1.3033 4.0321 -2.2698 18 6 -2.4798 3.4169 -2.4870 19 8 -2.6215 2.2856 -2.9051 20 6 -3.5710 4.3475 -2.1288 21 6 -4.9543 4.2678 -2.1423 22 6 -5.7094 5.3567 -1.7358 23 6 -5.0919 6.5203 -1.3169 24 6 -5.9281 7.6947 -0.8777 25 6 -3.7092 6.6142 -1.2971 26 6 -2.9414 5.5336 -1.7007 27 6 -1.4888 5.2826 -1.8101 28 8 -0.6099 6.0729 -1.5308 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 0.7243 4.1969 -2.7809 36 1 -0.0713 2.6985 -3.3193 37 1 -5.4421 3.3609 -2.4679 38 1 -6.7876 5.2957 -1.7464 39 1 -6.1402 8.3313 -1.7367 40 1 -6.8648 7.3349 -0.4519 41 1 -5.3839 8.2674 -0.1266 42 1 -3.2321 7.5257 -0.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188112446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:41 Heat of formation + Delta-G solvation = -127.817867 kcal Electronic energy + Delta-G solvation = -28163.572306 eV Core-core repulsion = 24073.906179 eV Total energy + Delta-G solvation = -4089.666127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.58650 -41.45507 -39.91445 -39.77300 -37.89421 -37.04347 -35.60743 -34.38367 -33.43431 -32.53788 -30.66921 -29.31869 -27.92211 -26.04852 -25.36628 -24.35908 -22.92333 -22.59597 -21.62190 -20.91211 -19.28974 -18.89833 -18.75413 -18.38227 -17.82569 -17.30572 -17.11966 -16.87440 -16.46496 -16.25056 -15.90266 -15.28533 -15.15389 -15.10242 -14.98782 -14.83203 -14.61307 -14.40246 -13.58407 -13.40662 -13.37675 -13.24642 -13.17852 -13.02547 -12.99882 -12.86153 -12.66585 -12.62742 -12.18859 -12.01318 -11.83049 -11.70246 -11.58512 -11.50212 -11.09613 -10.91053 -10.57895 -10.26874 -9.94891 -8.31335 -6.48928 -1.09180 -0.07606 0.84335 0.88910 1.11407 1.39662 1.43717 1.51285 1.59271 2.06350 2.38719 2.46192 2.55728 2.98257 3.10004 3.54501 3.66741 3.74798 3.83582 3.96163 4.06788 4.08387 4.13939 4.28192 4.30544 4.33995 4.47263 4.68890 4.73940 4.82149 4.88645 4.91777 4.99124 5.05202 5.12200 5.25674 5.26883 5.33808 5.40208 5.45694 5.59074 5.68906 5.87274 5.95319 6.02380 6.34052 6.53632 6.80083 7.21665 8.75573 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.002832 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.183887 B = 9884.656108 C =10288.919080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.984 3.016 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.262 1.262 13 O -0.355 6.355 14 C 0.433 3.567 15 O -0.538 6.538 16 C 0.122 3.878 17 N -0.569 5.569 18 C 0.576 3.424 19 O -0.488 6.488 20 C -0.164 4.164 21 C -0.035 4.035 22 C -0.084 4.084 23 C -0.052 4.052 24 C -0.118 4.118 25 C -0.048 4.048 26 C -0.150 4.150 27 C 0.574 3.426 28 O -0.491 6.491 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.271 0.729 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.396 13.256 -10.439 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.187 1.187 13 O -0.270 6.270 14 C 0.276 3.724 15 O -0.429 6.429 16 C 0.000 4.000 17 N -0.311 5.311 18 C 0.367 3.633 19 O -0.361 6.361 20 C -0.167 4.167 21 C -0.053 4.053 22 C -0.102 4.102 23 C -0.053 4.053 24 C -0.174 4.174 25 C -0.066 4.066 26 C -0.153 4.153 27 C 0.366 3.634 28 O -0.364 6.364 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.072 12.907 -10.030 26.669 hybrid contribution 1.470 -0.490 0.608 1.665 sum -19.602 12.418 -9.422 25.044 Atomic orbital electron populations 1.21684 0.96553 1.00552 0.99640 1.21862 0.94090 0.97989 1.02598 1.20445 0.94798 0.89245 0.78216 0.97807 1.21296 0.90187 1.40416 1.07067 0.91320 1.25847 1.04490 0.93729 0.94239 1.70013 1.37643 1.37873 1.09730 0.85225 0.77337 0.78799 0.78004 1.19424 1.20128 1.18666 1.86443 1.34945 1.62721 1.42935 1.24373 0.80341 0.76792 0.90935 1.90618 1.55977 1.59122 1.37150 1.21288 0.83771 1.01188 0.93718 1.46258 1.08032 1.15721 1.61107 1.18854 0.83549 0.85800 0.75049 1.90781 1.85564 1.17797 1.41924 1.20418 0.95405 0.94106 1.06784 1.21144 0.89211 1.00662 0.94313 1.21810 1.02458 0.90537 0.95384 1.20617 0.92343 0.97403 0.94888 1.21009 0.99504 0.94193 1.02744 1.20979 0.93478 0.96869 0.95307 1.20378 0.91231 0.97605 1.06106 1.18893 0.90277 0.80256 0.74019 1.90790 1.50664 1.49427 1.45505 0.94936 0.94997 0.91893 0.93189 0.89340 0.91940 0.82360 0.82057 0.82220 0.79873 0.88631 0.88777 0.90448 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.57 71.98 0.62 -5.36 16 2 C -0.13 -6.68 5.49 30.60 0.17 -6.51 16 3 C 0.23 12.79 2.25 29.85 0.07 12.86 16 4 H 0.00 0.26 7.16 -2.39 -0.02 0.25 16 5 C -0.55 -32.12 8.90 25.60 0.23 -31.89 16 6 H 0.07 3.89 7.81 -2.92 -0.02 3.87 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -53.53 11.31 21.45 0.24 -53.29 16 9 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 13 O -0.35 -17.64 9.81 -51.45 -0.50 -18.15 16 14 C 0.43 19.27 6.48 71.24 0.46 19.73 16 15 O -0.54 -27.27 13.57 21.97 0.30 -26.98 16 16 C 0.12 3.92 6.34 85.63 0.54 4.46 16 17 N -0.57 -18.36 2.11 -767.04 -1.62 -19.98 16 18 C 0.58 17.86 8.02 86.82 0.70 18.55 16 19 O -0.49 -17.07 17.67 -3.53 -0.06 -17.13 16 20 C -0.16 -3.92 6.40 -20.00 -0.13 -4.04 16 21 C -0.03 -0.53 10.09 22.43 0.23 -0.30 16 22 C -0.08 -0.75 9.68 22.35 0.22 -0.53 16 23 C -0.05 -0.54 5.89 -19.78 -0.12 -0.65 16 24 C -0.12 -0.41 10.00 71.24 0.71 0.30 16 25 C -0.05 -0.80 9.74 22.44 0.22 -0.59 16 26 C -0.15 -3.67 6.41 -20.00 -0.13 -3.80 16 27 C 0.57 18.30 8.02 86.82 0.70 19.00 16 28 O -0.49 -18.00 17.68 -3.56 -0.06 -18.06 16 29 H 0.03 1.62 7.80 -2.39 -0.02 1.60 16 30 H 0.03 1.47 6.06 -2.39 -0.01 1.45 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.09 5.02 5.96 -2.39 -0.01 5.01 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.16 4.29 7.97 -2.39 -0.02 4.27 16 36 H 0.16 4.24 7.96 -2.39 -0.02 4.22 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.09 0.04 8.08 -2.39 -0.02 0.02 16 41 H 0.08 0.29 8.08 -2.38 -0.02 0.27 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -79.82 364.34 6.30 -73.52 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.06 Total: 11.71 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 4.93 Total: 22.61 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.38 Total: -73.26 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -0.33 Total: -80.31 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.82 6.30 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188112446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.294 kcal (2) G-P(sol) polarization free energy of solvation -79.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds