Wall clock time and date at job start Tue Mar 31 2020 16:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34234 * 116.99771 * 269.99740 * 13 3 2 15 15 O 1.20824 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99896 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46832 * 180.02562 * 16 14 13 18 18 C 1.34521 * 124.46000 * 269.69511 * 17 16 14 19 19 O 1.21453 * 125.70858 * 0.02562 * 18 17 16 20 20 C 1.47807 * 108.58246 * 179.90845 * 18 17 16 21 21 C 1.38562 * 134.30383 * 180.10528 * 20 18 17 22 22 C 1.38607 * 119.72534 * 180.29291 * 21 20 18 23 23 C 1.38234 * 120.46012 * 359.97438 * 22 21 20 24 24 C 1.50693 * 119.77475 * 179.97438 * 23 22 21 25 25 C 1.38622 * 120.45516 * 359.97438 * 23 22 21 26 26 C 1.38565 * 119.71965 * 0.02562 * 25 23 22 27 27 C 1.34523 * 124.45845 * 90.00246 * 17 16 14 28 28 O 1.21446 * 125.71288 * 359.95991 * 27 17 16 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46766 * 300.00081 * 16 14 13 36 36 H 1.09000 * 109.46689 * 60.00007 * 16 14 13 37 37 H 1.08005 * 120.13717 * 0.31508 * 21 20 18 38 38 H 1.07997 * 119.77592 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47354 * 269.98035 * 24 23 22 40 40 H 1.09004 * 109.46872 * 29.98234 * 24 23 22 41 41 H 1.09004 * 109.47134 * 149.97961 * 24 23 22 42 42 H 1.07996 * 120.13619 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7254 1.2561 15 8 -0.2192 2.7369 0.2657 16 6 0.0075 3.4224 2.5086 17 7 -1.3032 4.0319 2.2701 18 6 -1.4888 5.2845 1.8159 19 8 -0.6100 6.0769 1.5425 20 6 -2.9413 5.5340 1.7027 21 6 -3.7091 6.6146 1.2992 22 6 -5.0918 6.5204 1.3180 23 6 -5.7093 5.3564 1.7359 24 6 -7.2137 5.2711 1.7508 25 6 -4.9541 4.2669 2.1413 26 6 -3.5708 4.3467 2.1277 27 6 -2.4795 3.4147 2.4819 28 8 -2.6213 2.2812 2.8941 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 -0.0711 2.6983 3.3195 36 1 0.7246 4.1967 2.7811 37 1 -3.2320 7.5263 0.9710 38 1 -5.6910 7.3623 1.0041 39 1 -7.5869 5.6023 2.7198 40 1 -7.6216 5.9094 0.9669 41 1 -7.5210 4.2400 1.5762 42 1 -5.4419 3.3599 2.4664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188112470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:45 Heat of formation + Delta-G solvation = -97.599509 kcal Electronic energy + Delta-G solvation = -28278.141498 eV Core-core repulsion = 24189.785737 eV Total energy + Delta-G solvation = -4088.355760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57244 -39.95379 -38.98893 -38.77336 -36.37193 -35.80548 -33.75555 -33.51042 -31.98421 -31.81763 -29.68862 -27.92048 -27.13898 -25.06490 -23.73436 -22.83199 -21.91273 -21.62201 -20.20733 -19.69177 -17.90941 -17.86793 -17.55392 -16.71989 -16.51286 -16.21373 -15.85434 -15.52981 -15.43647 -15.11706 -14.47512 -14.43572 -14.37397 -14.18183 -14.10606 -13.55820 -13.02177 -12.85998 -12.78867 -12.60665 -12.47257 -12.19071 -12.02662 -11.95569 -11.76983 -11.50859 -11.25774 -10.82603 -10.76119 -10.56217 -10.52231 -10.06573 -9.86108 -9.66346 -9.61692 -9.49732 -9.31526 -9.11352 -8.67669 -6.24739 -4.27356 -0.23336 0.58157 1.72675 1.93284 2.63902 2.70199 3.17210 3.19689 3.29637 3.32374 3.33965 3.44537 4.03175 4.22063 4.24719 4.28665 4.60111 4.64683 4.82257 4.94813 5.00650 5.04742 5.08200 5.10830 5.14095 5.35027 5.37482 5.49710 5.54225 5.66224 5.80451 5.86523 5.89542 5.96876 6.19679 6.40006 6.42249 6.55617 6.63926 6.71195 7.00519 7.00996 7.30469 7.43551 7.46935 8.14010 8.48850 8.81904 9.31826 10.87144 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.003020 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.353113 B = 9269.301115 C = 9544.542016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.198 3.802 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.089 0.911 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.261 1.261 12 H -0.289 1.289 13 O -0.334 6.334 14 C 0.440 3.560 15 O -0.508 6.508 16 C 0.117 3.883 17 N -0.563 5.563 18 C 0.579 3.421 19 O -0.454 6.454 20 C -0.139 4.139 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.064 4.064 24 C -0.119 4.119 25 C -0.047 4.047 26 C -0.128 4.128 27 C 0.580 3.420 28 O -0.457 6.457 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.270 0.730 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.031 10.433 8.748 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.145 3.855 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.107 0.893 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.186 1.186 12 H -0.216 1.216 13 O -0.249 6.249 14 C 0.281 3.719 15 O -0.397 6.397 16 C -0.005 4.005 17 N -0.305 5.305 18 C 0.368 3.632 19 O -0.325 6.325 20 C -0.143 4.143 21 C -0.058 4.058 22 C -0.118 4.118 23 C -0.064 4.064 24 C -0.175 4.175 25 C -0.065 4.065 26 C -0.132 4.132 27 C 0.369 3.631 28 O -0.328 6.328 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.522 10.123 8.398 27.826 hybrid contribution -0.238 -0.654 -0.980 1.202 sum -24.760 9.468 7.418 27.527 Atomic orbital electron populations 1.21885 0.96903 1.00120 1.01689 1.22370 0.94360 0.99458 1.02344 1.21042 0.96451 0.88095 0.79942 0.93536 1.20775 0.87537 1.40052 1.07992 0.89346 1.24722 0.94956 0.95242 0.97326 1.69832 1.08458 1.44211 1.29799 0.87005 0.80994 0.80151 0.81333 1.19854 1.18592 1.21606 1.86485 1.33437 1.62103 1.42868 1.23387 0.81386 0.77493 0.89622 1.90639 1.55488 1.58153 1.35409 1.21117 0.82905 1.00479 0.95993 1.46091 1.07874 1.15268 1.61272 1.18320 0.88952 0.80758 0.75167 1.90838 1.49373 1.48471 1.43769 1.20485 0.93219 0.96214 1.04350 1.20779 0.92933 0.97278 0.94829 1.21318 0.93835 0.97915 0.98720 1.20190 0.96868 0.92973 0.96414 1.20891 0.89768 1.03707 1.03168 1.20650 0.90520 0.98963 0.96403 1.20480 0.94471 0.94928 1.03276 1.18304 0.82919 0.85861 0.75998 1.90819 1.85155 1.16495 1.40300 0.92729 0.93824 0.93600 0.91705 0.91056 0.92007 0.84569 0.84368 0.83861 0.84081 0.90256 0.90717 0.90722 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.57 37.16 0.32 -2.75 16 2 C -0.15 -3.42 5.15 -26.73 -0.14 -3.56 16 3 C 0.20 5.05 1.84 -27.88 -0.05 5.00 16 4 H 0.05 1.26 6.21 -51.93 -0.32 0.94 16 5 C -0.53 -15.17 9.48 -34.44 -0.33 -15.49 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.08 2.34 5.45 -17.82 -0.10 2.25 16 8 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 9 Si 0.88 21.90 24.41 -169.99 -4.15 17.75 16 10 H -0.27 -6.51 6.83 56.52 0.39 -6.12 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 O -0.33 -7.61 9.81 -39.27 -0.39 -7.99 16 14 C 0.44 8.84 6.48 36.01 0.23 9.07 16 15 O -0.51 -11.39 13.57 -18.75 -0.25 -11.65 16 16 C 0.12 1.72 6.34 -5.19 -0.03 1.68 16 17 N -0.56 -8.27 2.11 -118.91 -0.25 -8.52 16 18 C 0.58 8.43 8.02 -12.46 -0.10 8.33 16 19 O -0.45 -7.65 17.68 5.41 0.10 -7.56 16 20 C -0.14 -1.61 6.40 -104.84 -0.67 -2.28 16 21 C -0.04 -0.33 10.09 -39.33 -0.40 -0.73 16 22 C -0.10 -0.60 9.68 -39.45 -0.38 -0.99 16 23 C -0.06 -0.41 5.89 -104.49 -0.62 -1.02 16 24 C -0.12 -0.41 10.00 36.00 0.36 -0.05 16 25 C -0.05 -0.40 9.74 -39.32 -0.38 -0.78 16 26 C -0.13 -1.47 6.41 -104.83 -0.67 -2.14 16 27 C 0.58 8.28 8.02 -12.46 -0.10 8.18 16 28 O -0.46 -7.39 17.68 5.41 0.10 -7.29 16 29 H 0.05 1.17 7.80 -51.93 -0.40 0.77 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.94 6.06 -51.93 -0.31 0.62 16 32 H 0.06 1.55 3.22 -51.93 -0.17 1.38 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.14 1.64 7.96 -51.93 -0.41 1.23 16 36 H 0.14 1.73 7.96 -51.93 -0.41 1.32 16 37 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 41 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -35.56 357.56 -6.76 -42.32 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.02 Total: -1.14 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -3.05 Total: 4.72 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.52 Total: -34.55 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.45 Total: -34.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.56 -6.76 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188112470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.278 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds