Wall clock time and date at job start Tue Mar 31 2020 16:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34234 * 116.99771 * 269.99740 * 13 3 2 15 15 O 1.20824 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99896 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46832 * 180.02562 * 16 14 13 18 18 C 1.34521 * 124.46000 * 269.69511 * 17 16 14 19 19 O 1.21453 * 125.70858 * 0.02562 * 18 17 16 20 20 C 1.47807 * 108.58246 * 179.90845 * 18 17 16 21 21 C 1.38562 * 134.30383 * 180.10528 * 20 18 17 22 22 C 1.38607 * 119.72534 * 180.29291 * 21 20 18 23 23 C 1.38234 * 120.46012 * 359.97438 * 22 21 20 24 24 C 1.50693 * 119.77475 * 179.97438 * 23 22 21 25 25 C 1.38622 * 120.45516 * 359.97438 * 23 22 21 26 26 C 1.38565 * 119.71965 * 0.02562 * 25 23 22 27 27 C 1.34523 * 124.45845 * 90.00246 * 17 16 14 28 28 O 1.21446 * 125.71288 * 359.95991 * 27 17 16 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46766 * 300.00081 * 16 14 13 36 36 H 1.09000 * 109.46689 * 60.00007 * 16 14 13 37 37 H 1.08005 * 120.13717 * 0.31508 * 21 20 18 38 38 H 1.07997 * 119.77592 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47354 * 269.98035 * 24 23 22 40 40 H 1.09004 * 109.46872 * 29.98234 * 24 23 22 41 41 H 1.09004 * 109.47134 * 149.97961 * 24 23 22 42 42 H 1.07996 * 120.13619 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7254 1.2561 15 8 -0.2192 2.7369 0.2657 16 6 0.0075 3.4224 2.5086 17 7 -1.3032 4.0319 2.2701 18 6 -1.4888 5.2845 1.8159 19 8 -0.6100 6.0769 1.5425 20 6 -2.9413 5.5340 1.7027 21 6 -3.7091 6.6146 1.2992 22 6 -5.0918 6.5204 1.3180 23 6 -5.7093 5.3564 1.7359 24 6 -7.2137 5.2711 1.7508 25 6 -4.9541 4.2669 2.1413 26 6 -3.5708 4.3467 2.1277 27 6 -2.4795 3.4147 2.4819 28 8 -2.6213 2.2812 2.8941 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 -0.0711 2.6983 3.3195 36 1 0.7246 4.1967 2.7811 37 1 -3.2320 7.5263 0.9710 38 1 -5.6910 7.3623 1.0041 39 1 -7.5869 5.6023 2.7198 40 1 -7.6216 5.9094 0.9669 41 1 -7.5210 4.2400 1.5762 42 1 -5.4419 3.3599 2.4664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188112470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:44 Heat of formation + Delta-G solvation = -120.349111 kcal Electronic energy + Delta-G solvation = -28279.127995 eV Core-core repulsion = 24189.785737 eV Total energy + Delta-G solvation = -4089.342257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.59677 -41.59245 -39.91673 -39.78332 -38.03332 -37.06061 -35.65142 -34.41041 -33.96875 -32.54750 -30.71694 -29.74114 -27.95866 -26.04317 -25.07689 -24.36668 -23.16020 -22.63236 -21.78670 -20.93940 -19.56432 -18.91564 -18.77166 -18.43123 -18.02920 -17.55928 -17.17677 -16.91278 -16.48166 -16.25358 -15.92243 -15.41088 -15.28641 -15.15525 -15.10104 -14.85327 -14.60859 -14.55127 -13.98210 -13.74028 -13.52861 -13.26473 -13.24800 -13.19782 -13.02235 -12.99956 -12.67388 -12.66014 -12.14051 -12.04386 -11.72573 -11.62525 -11.58393 -11.54015 -11.24982 -11.08652 -10.80873 -10.26851 -9.94994 -8.49522 -6.58430 -1.09244 -0.07729 0.81363 0.88872 1.02589 1.18266 1.26062 1.35492 1.54480 2.00947 2.14474 2.46429 2.55077 2.82011 3.09974 3.51892 3.54377 3.73595 3.83533 3.94014 4.00262 4.04481 4.07653 4.08917 4.12689 4.20379 4.33782 4.47714 4.68731 4.82183 4.83507 4.85841 4.88682 4.91895 4.93055 5.05254 5.22019 5.26530 5.26936 5.33552 5.39982 5.52203 5.68687 5.95187 6.05585 6.33931 6.45374 6.67711 7.05488 8.66294 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.003020 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.353113 B = 9269.301115 C = 9544.542016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.202 3.798 4 H 0.027 0.973 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.033 3.967 8 N -0.927 5.927 9 Si 0.936 3.064 10 H -0.248 1.248 11 H -0.261 1.261 12 H -0.281 1.281 13 O -0.344 6.344 14 C 0.436 3.564 15 O -0.533 6.533 16 C 0.121 3.879 17 N -0.569 5.569 18 C 0.574 3.426 19 O -0.491 6.491 20 C -0.164 4.164 21 C -0.036 4.036 22 C -0.085 4.085 23 C -0.052 4.052 24 C -0.119 4.119 25 C -0.046 4.046 26 C -0.148 4.148 27 C 0.577 3.423 28 O -0.485 6.485 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.276 0.724 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.189 10.791 8.481 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.148 3.852 4 H 0.045 0.955 5 C -0.579 4.579 6 H 0.068 0.932 7 C -0.167 4.167 8 N -0.564 5.564 9 Si 0.761 3.239 10 H -0.173 1.173 11 H -0.185 1.185 12 H -0.208 1.208 13 O -0.259 6.259 14 C 0.278 3.722 15 O -0.423 6.423 16 C 0.000 4.000 17 N -0.311 5.311 18 C 0.366 3.634 19 O -0.364 6.364 20 C -0.168 4.168 21 C -0.055 4.055 22 C -0.103 4.103 23 C -0.052 4.052 24 C -0.175 4.175 25 C -0.065 4.065 26 C -0.152 4.152 27 C 0.368 3.632 28 O -0.358 6.358 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.199 0.801 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -28.705 10.486 8.155 31.630 hybrid contribution 0.966 -0.626 -0.833 1.421 sum -27.739 9.860 7.322 30.336 Atomic orbital electron populations 1.21778 0.94786 1.01990 1.00981 1.22271 0.96150 0.97334 1.02473 1.20719 0.94208 0.89772 0.80532 0.95516 1.20946 0.89400 1.40110 1.07441 0.93193 1.25526 0.96095 0.95534 0.99546 1.69947 1.10242 1.45268 1.30989 0.86039 0.79121 0.80404 0.78330 1.17277 1.18527 1.20763 1.86470 1.35256 1.62740 1.41484 1.24401 0.80036 0.76634 0.91104 1.90614 1.55851 1.58971 1.36859 1.21288 0.83815 1.01284 0.93653 1.46257 1.07910 1.15585 1.61376 1.18899 0.90305 0.80217 0.73978 1.90803 1.50679 1.49304 1.45619 1.20400 0.91177 0.97815 1.07394 1.21134 0.93955 0.96730 0.93647 1.21798 0.92886 0.98932 0.96663 1.20619 0.98485 0.91990 0.94132 1.21006 0.87151 1.04630 1.04686 1.20981 0.89328 1.00381 0.95766 1.20379 0.95086 0.94120 1.05591 1.18807 0.83500 0.85836 0.75027 1.90786 1.85552 1.17656 1.41826 0.93832 0.90569 0.93934 0.92040 0.90389 0.91421 0.81819 0.82426 0.82471 0.80052 0.88693 0.88889 0.90293 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.57 71.98 0.62 -4.91 16 2 C -0.14 -6.62 5.15 30.60 0.16 -6.46 16 3 C 0.20 10.52 1.84 29.85 0.05 10.58 16 4 H 0.03 1.50 6.21 -2.39 -0.01 1.49 16 5 C -0.54 -32.46 9.48 25.60 0.24 -32.22 16 6 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 7 C 0.03 1.96 5.45 84.65 0.46 2.42 16 8 N -0.93 -57.43 13.96 21.45 0.30 -57.13 16 9 Si 0.94 45.22 24.41 68.60 1.67 46.90 16 10 H -0.25 -10.98 6.83 99.48 0.68 -10.30 16 11 H -0.26 -12.51 6.53 99.48 0.65 -11.86 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 O -0.34 -16.17 9.81 -51.46 -0.50 -16.68 16 14 C 0.44 17.93 6.48 71.24 0.46 18.39 16 15 O -0.53 -24.49 13.57 21.97 0.30 -24.20 16 16 C 0.12 3.63 6.34 85.63 0.54 4.17 16 17 N -0.57 -17.10 2.11 -767.04 -1.62 -18.72 16 18 C 0.57 17.18 8.02 86.82 0.70 17.87 16 19 O -0.49 -17.19 17.68 -3.57 -0.06 -17.26 16 20 C -0.16 -3.71 6.40 -20.00 -0.13 -3.84 16 21 C -0.04 -0.52 10.09 22.44 0.23 -0.30 16 22 C -0.09 -0.68 9.68 22.36 0.22 -0.46 16 23 C -0.05 -0.46 5.89 -19.78 -0.12 -0.57 16 24 C -0.12 -0.26 10.00 71.23 0.71 0.45 16 25 C -0.05 -0.68 9.74 22.44 0.22 -0.46 16 26 C -0.15 -3.31 6.41 -20.00 -0.13 -3.44 16 27 C 0.58 16.64 8.02 86.82 0.70 17.33 16 28 O -0.49 -15.83 17.68 -3.55 -0.06 -15.89 16 29 H 0.04 1.82 7.80 -2.39 -0.02 1.80 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.04 1.70 6.06 -2.39 -0.01 1.69 16 32 H 0.06 2.84 3.22 -2.38 -0.01 2.83 16 33 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 34 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.16 3.93 7.96 -2.39 -0.02 3.91 16 36 H 0.16 4.06 7.96 -2.39 -0.02 4.04 16 37 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.09 -0.06 8.08 -2.39 -0.02 -0.08 16 41 H 0.08 0.17 8.08 -2.38 -0.02 0.15 16 42 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -81.39 357.56 5.93 -75.46 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.98 Total: 8.95 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 4.93 Total: 18.57 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.32 Total: -75.85 kcal Atomic # 8 Polarization: -73.69 SS G_CDS: -0.33 Total: -74.02 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.90 kcal Total: -81.39 5.93 -75.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188112470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.890 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds