Wall clock time and date at job start Tue Mar 31 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 H 1.08994 * 109.47057 * 304.99982 * 15 13 12 17 17 O 1.42900 * 109.46806 * 185.00320 * 15 13 12 18 18 C 1.53000 * 109.47016 * 65.00259 * 15 13 12 19 19 C 1.50701 * 109.46989 * 184.99818 * 18 15 13 20 20 C 1.38255 * 119.99836 * 89.99980 * 19 18 15 21 21 C 1.38213 * 120.00072 * 179.97438 * 20 19 18 22 22 C 1.38261 * 119.99871 * 359.97438 * 21 20 19 23 23 C 1.38206 * 119.99778 * 0.02935 * 22 21 20 24 24 C 1.50698 * 119.99978 * 179.97438 * 23 22 21 25 25 F 1.39906 * 109.47266 * 359.97438 * 24 23 22 26 26 F 1.39901 * 109.47325 * 119.99762 * 24 23 22 27 27 F 1.39901 * 109.47408 * 240.00072 * 24 23 22 28 28 C 1.38210 * 120.00198 * 269.72824 * 19 18 15 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 34 34 H 0.96706 * 113.99943 * 299.99671 * 17 15 13 35 35 H 1.08998 * 109.46730 * 304.99887 * 18 15 13 36 36 H 1.08995 * 109.47254 * 64.99672 * 18 15 13 37 37 H 1.08005 * 120.00380 * 359.97438 * 20 19 18 38 38 H 1.08000 * 120.00384 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.00020 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99636 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 1 3.6089 -1.1972 -3.3708 17 8 2.8078 0.2133 -4.6503 18 6 1.6405 -1.8018 -4.0040 19 6 2.1975 -2.5935 -5.1589 20 6 2.9539 -3.7258 -4.9199 21 6 3.4643 -4.4523 -5.9791 22 6 3.2180 -4.0470 -7.2778 23 6 2.4619 -2.9151 -7.5167 24 6 2.1938 -2.4729 -8.9322 25 9 2.8092 -3.3598 -9.8223 26 9 0.8142 -2.4614 -9.1639 27 9 2.7098 -1.1869 -9.1248 28 6 1.9474 -2.1910 -6.4572 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.9026 -0.5284 4.4375 33 1 2.2490 -1.6318 -1.1526 34 1 1.9915 0.6693 -4.8970 35 1 1.4523 -2.4692 -3.1630 36 1 0.7076 -1.3259 -4.3060 37 1 3.1460 -4.0427 -3.9054 38 1 4.0549 -5.3371 -5.7924 39 1 3.6171 -4.6144 -8.1055 40 1 1.3525 -1.3091 -6.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188803345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:45 Heat of formation + Delta-G solvation = -217.511256 kcal Electronic energy + Delta-G solvation = -28047.899875 eV Core-core repulsion = 23412.487611 eV Total energy + Delta-G solvation = -4635.412264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.42072 -47.95417 -47.86413 -40.22073 -39.29310 -36.68425 -35.03513 -33.52881 -32.46221 -32.04252 -30.48456 -28.72146 -26.34378 -25.31153 -24.82909 -22.71924 -21.59726 -21.27289 -19.79274 -18.73712 -18.63481 -18.54832 -17.90904 -16.63842 -16.50169 -16.28625 -15.84386 -15.54465 -14.91868 -14.81481 -14.73666 -14.59668 -14.32544 -14.32288 -14.08459 -14.03735 -13.97581 -13.51862 -13.31034 -12.98687 -12.96657 -12.89623 -12.30021 -12.19769 -11.91964 -11.83570 -11.60833 -11.44990 -11.32594 -10.89198 -10.81757 -10.26181 -9.77198 -9.54408 -9.33790 -9.31712 -8.92422 -8.82841 -8.29395 -6.27542 -4.30722 0.60694 0.90582 2.38214 2.93423 3.17386 3.18837 3.31082 3.34729 3.43354 3.69219 3.76013 4.15690 4.18700 4.25708 4.44015 4.47264 4.68701 4.78615 4.82659 4.90109 5.06408 5.07664 5.20170 5.33430 5.41176 5.59947 5.67576 5.80975 5.94172 6.13089 6.21825 6.27448 6.42189 6.46615 6.75953 7.06984 7.17075 7.42421 7.48950 8.03613 8.40416 8.65940 8.77143 9.32873 10.84532 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.002463 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.804521 B =11363.391667 C =11909.458964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.696 5.696 13 C 0.474 3.526 14 O -0.546 6.546 15 C 0.097 3.903 16 H 0.123 0.877 17 O -0.536 6.536 18 C -0.112 4.112 19 C -0.072 4.072 20 C -0.083 4.083 21 C -0.119 4.119 22 C -0.079 4.079 23 C -0.183 4.183 24 C 0.508 3.492 25 F -0.179 7.179 26 F -0.178 7.178 27 F -0.175 7.175 28 C -0.054 4.054 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.395 0.605 34 H 0.380 0.620 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -8.510 -22.746 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.258 3.742 14 O -0.425 6.425 15 C 0.034 3.966 16 H 0.140 0.860 17 O -0.340 6.340 18 C -0.150 4.150 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.136 4.136 22 C -0.097 4.097 23 C -0.185 4.185 24 C 0.454 3.546 25 F -0.161 7.161 26 F -0.159 7.159 27 F -0.156 7.156 28 C -0.072 4.072 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.399 -7.845 -22.572 23.900 hybrid contribution -1.097 0.497 0.091 1.208 sum -0.698 -7.348 -22.481 23.662 Atomic orbital electron populations 1.22449 0.99215 1.00871 0.99369 1.19129 0.90163 0.94738 0.82791 0.93359 1.21021 1.33465 1.14503 0.88512 0.90152 1.24833 0.95468 0.96685 0.95531 1.69865 1.44760 1.40062 0.98090 0.86874 0.80503 0.83582 0.77533 1.20274 1.22086 1.18685 1.46247 1.64642 1.13777 1.09876 1.21318 0.79067 0.88107 0.85688 1.90683 1.50849 1.15848 1.85111 1.21862 1.00178 0.88493 0.86050 0.85989 1.86592 1.38466 1.57127 1.51813 1.21340 0.98914 0.97669 0.97043 1.19655 0.98193 0.95589 0.93785 1.21391 0.94899 0.93714 1.00101 1.21151 1.00296 1.00478 0.91723 1.20995 0.95876 0.94507 0.98317 1.19917 1.06681 1.00706 0.91164 1.18327 0.74182 0.75080 0.86985 1.93158 1.82990 1.68689 1.71241 1.93219 1.30939 1.96253 1.95513 1.93238 1.86764 1.39626 1.95978 1.20742 0.97167 0.97988 0.91274 0.94616 0.93377 0.92753 0.92209 0.77130 0.77181 0.88493 0.89523 0.84605 0.84692 0.84639 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.96 37.16 0.33 -3.07 16 2 C 0.24 5.34 2.15 -69.08 -0.15 5.19 16 3 H 0.05 1.24 6.64 -51.93 -0.34 0.89 16 4 C -0.54 -13.96 9.31 -34.44 -0.32 -14.29 16 5 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 8 Si 0.89 21.28 24.37 -169.99 -4.14 17.13 16 9 H -0.28 -6.40 6.87 56.52 0.39 -6.01 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.70 -12.52 4.97 -54.93 -0.27 -12.79 16 13 C 0.47 8.10 7.13 -10.98 -0.08 8.02 16 14 O -0.55 -11.61 15.99 -14.30 -0.23 -11.84 16 15 C 0.10 1.19 3.37 -27.88 -0.09 1.10 16 16 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 17 O -0.54 -7.02 12.50 -55.09 -0.69 -7.71 16 18 C -0.11 -1.05 5.00 -27.88 -0.14 -1.19 16 19 C -0.07 -0.65 4.96 -104.63 -0.52 -1.17 16 20 C -0.08 -0.66 9.70 -39.58 -0.38 -1.04 16 21 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 22 C -0.08 -0.64 9.43 -39.58 -0.37 -1.01 16 23 C -0.18 -1.72 5.37 -104.63 -0.56 -2.28 16 24 C 0.51 4.93 3.32 36.00 0.12 5.05 16 25 F -0.18 -1.69 15.97 2.25 0.04 -1.65 16 26 F -0.18 -1.80 17.23 2.25 0.04 -1.76 16 27 F -0.17 -1.87 17.24 2.25 0.04 -1.84 16 28 C -0.05 -0.51 8.97 -39.59 -0.35 -0.86 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.40 5.98 8.24 -40.82 -0.34 5.65 16 34 H 0.38 4.17 8.79 45.56 0.40 4.57 16 35 H 0.10 0.81 7.71 -51.93 -0.40 0.41 16 36 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.14 0.88 7.16 -52.49 -0.38 0.50 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -32.32 350.69 -5.96 -38.28 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.78 Total: 6.66 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.02 Total: -4.75 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.50 Total: -37.80 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.92 Total: -19.55 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.32 -5.96 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188803345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.233 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds