Wall clock time and date at job start Tue Mar 31 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.46763 * 55.00237 * 15 13 12 17 17 O 1.42901 * 109.46896 * 175.00135 * 15 13 12 18 18 C 1.52999 * 109.47081 * 295.00121 * 15 13 12 19 19 C 1.50696 * 109.47089 * 175.00295 * 18 15 13 20 20 C 1.38256 * 120.00491 * 89.99982 * 19 18 15 21 21 C 1.38215 * 120.00245 * 179.97438 * 20 19 18 22 22 C 1.38255 * 119.99626 * 359.97438 * 21 20 19 23 23 C 1.38210 * 120.00324 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.99938 * 179.97438 * 23 22 21 25 25 F 1.39911 * 109.47088 * 0.02562 * 24 23 22 26 26 F 1.39903 * 109.47144 * 120.00196 * 24 23 22 27 27 F 1.39903 * 109.47289 * 240.00288 * 24 23 22 28 28 C 1.38223 * 119.99703 * 269.72542 * 19 18 15 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 34 34 H 0.96698 * 114.00208 * 59.99750 * 17 15 13 35 35 H 1.09006 * 109.47133 * 294.99598 * 18 15 13 36 36 H 1.09002 * 109.47266 * 55.00221 * 18 15 13 37 37 H 1.08000 * 119.99635 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.99756 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.99693 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00054 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 1 2.0273 -1.6032 -3.7812 17 8 2.5871 0.1566 -4.7075 18 6 4.0967 -1.1713 -3.3665 19 6 4.5584 -1.9875 -4.5461 20 6 5.1571 -1.3649 -5.6257 21 6 5.5811 -2.1136 -6.7074 22 6 5.4069 -3.4851 -6.7096 23 6 4.8084 -4.1075 -5.6304 24 6 4.6181 -5.6024 -5.6331 25 9 5.1232 -6.1347 -6.8243 26 9 5.3003 -6.1614 -4.5470 27 9 3.2548 -5.8992 -5.5302 28 6 4.3885 -3.3592 -4.5464 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.9026 -0.5284 4.4375 33 1 2.2490 -1.6318 -1.1526 34 1 3.1178 0.9584 -4.6047 35 1 4.7331 -0.2925 -3.2613 36 1 4.1579 -1.7748 -2.4608 37 1 5.2935 -0.2936 -5.6238 38 1 6.0492 -1.6273 -7.5505 39 1 5.7386 -4.0702 -7.5546 40 1 3.9245 -3.8460 -3.7013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188803387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:53 Heat of formation + Delta-G solvation = -217.544180 kcal Electronic energy + Delta-G solvation = -28103.720983 eV Core-core repulsion = 23468.307291 eV Total energy + Delta-G solvation = -4635.413692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.38316 -47.91771 -47.82669 -40.20412 -39.28391 -36.68969 -35.02390 -33.47489 -32.46613 -32.07699 -30.45008 -28.66689 -26.32634 -25.32629 -24.82545 -22.64072 -21.60168 -21.23736 -19.80952 -18.69788 -18.60469 -18.55124 -17.89827 -16.59505 -16.53001 -16.20970 -15.75292 -15.46538 -15.14731 -14.79372 -14.73066 -14.59191 -14.29825 -14.28438 -14.05080 -14.00028 -13.79834 -13.49744 -13.31323 -13.00024 -12.95470 -12.85020 -12.29052 -12.18412 -12.06586 -11.65789 -11.57907 -11.42576 -11.32628 -10.88388 -10.82411 -10.24858 -9.76187 -9.50899 -9.34511 -9.30165 -8.91339 -8.82087 -8.28548 -6.26698 -4.29944 0.64144 0.90837 2.41282 2.94147 3.19104 3.20501 3.31494 3.35096 3.46398 3.70771 3.78129 4.18485 4.20838 4.26386 4.43775 4.51707 4.66602 4.83212 4.86255 4.92747 5.08074 5.08931 5.21484 5.28166 5.51004 5.59223 5.72162 5.82593 5.95922 6.16582 6.24403 6.31020 6.44219 6.49611 6.78148 7.08713 7.17726 7.42890 7.47929 8.04110 8.41185 8.66392 8.77573 9.33661 10.85282 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002820 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.624215 B = 9925.222628 C =10953.249508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.696 5.696 13 C 0.474 3.526 14 O -0.547 6.547 15 C 0.098 3.902 16 H 0.121 0.879 17 O -0.537 6.537 18 C -0.113 4.113 19 C -0.071 4.071 20 C -0.070 4.070 21 C -0.120 4.120 22 C -0.079 4.079 23 C -0.182 4.182 24 C 0.508 3.492 25 F -0.180 7.180 26 F -0.176 7.176 27 F -0.176 7.176 28 C -0.067 4.067 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.268 0.732 33 H 0.395 0.605 34 H 0.380 0.620 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -6.325 -20.866 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.258 3.742 14 O -0.426 6.426 15 C 0.035 3.965 16 H 0.139 0.861 17 O -0.341 6.341 18 C -0.151 4.151 19 C -0.071 4.071 20 C -0.088 4.088 21 C -0.138 4.138 22 C -0.097 4.097 23 C -0.184 4.184 24 C 0.454 3.546 25 F -0.161 7.161 26 F -0.157 7.157 27 F -0.157 7.157 28 C -0.085 4.085 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.071 -5.986 -20.908 22.869 hybrid contribution -0.215 0.317 0.608 0.718 sum 6.856 -5.670 -20.300 22.164 Atomic orbital electron populations 1.22459 0.99240 1.00956 0.99387 1.19129 0.90212 0.94652 0.82757 0.93365 1.21018 1.33488 1.14500 0.88495 0.90138 1.24830 0.95438 0.96697 0.95532 1.69866 1.44747 1.40030 0.98082 0.86876 0.80592 0.83563 0.77454 1.20268 1.22115 1.18716 1.46260 1.64578 1.13879 1.09798 1.21311 0.79293 0.88127 0.85446 1.90679 1.51149 1.15973 1.84793 1.21850 0.95501 0.93330 0.85826 0.86134 1.86570 1.73819 1.35183 1.38541 1.21347 0.96220 1.00858 0.96633 1.19667 0.98320 0.92841 0.96273 1.21303 0.94739 1.00466 0.92335 1.21144 1.00493 0.93169 0.98952 1.20984 0.96381 0.95457 0.96880 1.19904 1.08466 0.90801 0.99206 1.18325 0.74101 0.88620 0.73542 1.93157 1.87344 1.88244 1.47353 1.93233 1.79904 1.87279 1.55311 1.93233 1.32164 1.94542 1.95763 1.20834 0.97001 0.93698 0.96948 0.94533 0.93389 0.92731 0.92218 0.77092 0.77146 0.89266 0.88456 0.84998 0.84832 0.84661 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.24 5.39 2.15 -69.08 -0.15 5.24 16 3 H 0.05 1.22 6.64 -51.93 -0.34 0.88 16 4 C -0.54 -13.99 9.31 -34.44 -0.32 -14.31 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 8 Si 0.89 21.34 24.37 -169.99 -4.14 17.20 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.70 -12.67 4.97 -54.93 -0.27 -12.95 16 13 C 0.47 8.11 7.13 -10.98 -0.08 8.03 16 14 O -0.55 -11.55 15.99 -14.30 -0.23 -11.77 16 15 C 0.10 1.20 3.37 -27.88 -0.09 1.11 16 16 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 17 O -0.54 -6.73 12.49 -55.09 -0.69 -7.42 16 18 C -0.11 -1.12 5.00 -27.89 -0.14 -1.26 16 19 C -0.07 -0.66 4.97 -104.62 -0.52 -1.18 16 20 C -0.07 -0.58 9.40 -39.58 -0.37 -0.95 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.08 -0.65 9.43 -39.59 -0.37 -1.02 16 23 C -0.18 -1.75 5.37 -104.63 -0.56 -2.31 16 24 C 0.51 5.09 3.32 36.01 0.12 5.21 16 25 F -0.18 -1.74 15.97 2.25 0.04 -1.70 16 26 F -0.18 -1.90 17.23 2.25 0.04 -1.86 16 27 F -0.18 -1.91 17.24 2.25 0.04 -1.87 16 28 C -0.07 -0.64 9.25 -39.58 -0.37 -1.01 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.40 6.17 8.24 -40.82 -0.34 5.83 16 34 H 0.38 3.92 8.79 45.56 0.40 4.32 16 35 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.10 0.94 7.71 -51.93 -0.40 0.54 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.14 0.89 7.16 -52.49 -0.38 0.52 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -32.12 350.67 -5.96 -38.08 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.78 Total: 6.94 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.02 Total: -4.89 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.50 Total: -37.98 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.92 Total: -19.19 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.43 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.12 -5.96 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188803387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.466 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds