Wall clock time and date at job start Tue Mar 31 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.46763 * 55.00237 * 15 13 12 17 17 O 1.42901 * 109.46896 * 175.00135 * 15 13 12 18 18 C 1.52999 * 109.47081 * 295.00121 * 15 13 12 19 19 C 1.50696 * 109.47089 * 175.00295 * 18 15 13 20 20 C 1.38256 * 120.00491 * 89.99982 * 19 18 15 21 21 C 1.38215 * 120.00245 * 179.97438 * 20 19 18 22 22 C 1.38255 * 119.99626 * 359.97438 * 21 20 19 23 23 C 1.38210 * 120.00324 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.99938 * 179.97438 * 23 22 21 25 25 F 1.39911 * 109.47088 * 0.02562 * 24 23 22 26 26 F 1.39903 * 109.47144 * 120.00196 * 24 23 22 27 27 F 1.39903 * 109.47289 * 240.00288 * 24 23 22 28 28 C 1.38223 * 119.99703 * 269.72542 * 19 18 15 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 34 34 H 0.96698 * 114.00208 * 59.99750 * 17 15 13 35 35 H 1.09006 * 109.47133 * 294.99598 * 18 15 13 36 36 H 1.09002 * 109.47266 * 55.00221 * 18 15 13 37 37 H 1.08000 * 119.99635 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.99756 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.99693 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00054 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 1 2.0273 -1.6032 -3.7812 17 8 2.5871 0.1566 -4.7075 18 6 4.0967 -1.1713 -3.3665 19 6 4.5584 -1.9875 -4.5461 20 6 5.1571 -1.3649 -5.6257 21 6 5.5811 -2.1136 -6.7074 22 6 5.4069 -3.4851 -6.7096 23 6 4.8084 -4.1075 -5.6304 24 6 4.6181 -5.6024 -5.6331 25 9 5.1232 -6.1347 -6.8243 26 9 5.3003 -6.1614 -4.5470 27 9 3.2548 -5.8992 -5.5302 28 6 4.3885 -3.3592 -4.5464 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.9026 -0.5284 4.4375 33 1 2.2490 -1.6318 -1.1526 34 1 3.1178 0.9584 -4.6047 35 1 4.7331 -0.2925 -3.2613 36 1 4.1579 -1.7748 -2.4608 37 1 5.2935 -0.2936 -5.6238 38 1 6.0492 -1.6273 -7.5505 39 1 5.7386 -4.0702 -7.5546 40 1 3.9245 -3.8460 -3.7013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188803387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:51 Heat of formation + Delta-G solvation = -239.123491 kcal Electronic energy + Delta-G solvation = -28104.656732 eV Core-core repulsion = 23468.307291 eV Total energy + Delta-G solvation = -4636.349441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.17510 -48.69960 -48.64382 -41.23779 -40.29143 -37.85064 -36.66416 -34.60169 -34.04409 -32.77485 -31.98729 -29.71697 -27.23901 -27.04699 -25.89882 -23.34618 -22.97247 -22.18013 -21.32842 -19.65337 -19.49642 -19.37629 -19.06764 -18.14761 -17.57549 -17.20954 -17.06609 -16.69425 -16.15891 -15.91886 -15.56006 -15.42682 -15.30176 -15.09336 -15.08882 -15.01767 -14.87076 -14.81009 -14.71244 -14.15460 -14.08590 -13.85930 -13.67904 -13.54994 -13.20632 -13.01434 -12.80186 -12.74969 -12.28831 -12.15436 -12.08128 -11.83799 -11.60340 -11.28483 -10.87923 -10.56335 -10.13994 -9.92534 -9.76906 -8.38042 -6.43799 -0.01298 0.26404 1.27508 1.35669 1.44290 1.62191 1.66643 2.25716 2.32046 2.54804 2.72530 2.98392 3.01105 3.28545 3.41613 3.65022 3.84920 3.89797 3.99173 4.03039 4.18453 4.31624 4.41534 4.44323 4.55211 4.57920 4.70131 4.81877 4.84780 4.98382 5.00796 5.19115 5.31079 5.35426 5.41145 5.50750 5.61060 5.83364 6.11477 6.55941 6.59857 6.84628 7.18382 7.37871 8.76911 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002820 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.624215 B = 9925.222628 C =10953.249508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.241 3.759 3 H 0.024 0.976 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.263 1.263 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.694 5.694 13 C 0.475 3.525 14 O -0.587 6.587 15 C 0.115 3.885 16 H 0.135 0.865 17 O -0.542 6.542 18 C -0.104 4.104 19 C -0.080 4.080 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.196 4.196 24 C 0.509 3.491 25 F -0.178 7.178 26 F -0.183 7.183 27 F -0.183 7.183 28 C -0.079 4.079 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.270 0.730 33 H 0.409 0.591 34 H 0.390 0.610 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -5.932 -22.863 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 H 0.042 0.958 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.764 3.236 9 H -0.188 1.188 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.261 3.739 14 O -0.468 6.468 15 C 0.052 3.948 16 H 0.152 0.848 17 O -0.348 6.348 18 C -0.142 4.142 19 C -0.080 4.080 20 C -0.091 4.091 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.197 4.197 24 C 0.455 3.545 25 F -0.159 7.159 26 F -0.164 7.164 27 F -0.164 7.164 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.244 0.756 34 H 0.240 0.760 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.202 -5.616 -22.935 24.687 hybrid contribution -0.174 0.154 1.141 1.165 sum 7.028 -5.462 -21.794 23.542 Atomic orbital electron populations 1.22371 0.98118 1.01718 0.99375 1.18764 0.91007 0.93304 0.83331 0.95767 1.21253 1.32332 1.13618 0.89766 0.92125 1.25529 0.96797 0.99206 0.95464 1.69972 1.46642 1.41850 0.98654 0.86040 0.79775 0.80559 0.77189 1.18838 1.22087 1.18659 1.46079 1.64798 1.14487 1.09096 1.22192 0.77914 0.87666 0.86108 1.90658 1.52716 1.17934 1.85523 1.21767 0.97038 0.92846 0.83110 0.84778 1.86557 1.74298 1.35819 1.38118 1.21242 0.94552 1.01253 0.97154 1.19595 0.99335 0.92585 0.96462 1.21597 0.93959 1.01542 0.92002 1.21480 0.99717 0.92787 0.99471 1.21266 0.95663 0.96144 0.96809 1.19959 1.09503 0.90285 0.99940 1.18426 0.73687 0.89077 0.73347 1.93155 1.87279 1.88303 1.47187 1.93215 1.80018 1.87481 1.55733 1.93215 1.32760 1.94654 1.95798 1.20944 0.97418 0.94061 0.97248 0.93704 0.94163 0.91590 0.92089 0.75550 0.76008 0.88598 0.88428 0.83252 0.82061 0.83204 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.68 8.96 71.98 0.65 -6.03 16 2 C 0.24 10.89 2.15 44.25 0.10 10.98 16 3 H 0.02 1.23 6.64 -2.39 -0.02 1.21 16 4 C -0.53 -27.80 9.31 25.60 0.24 -27.56 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.65 5.45 84.66 0.46 2.11 16 7 N -0.93 -54.69 13.96 21.45 0.30 -54.39 16 8 Si 0.94 43.81 24.37 68.60 1.67 45.48 16 9 H -0.26 -11.63 6.87 99.48 0.68 -10.95 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.26 -12.13 6.53 99.48 0.65 -11.48 16 12 N -0.69 -24.68 4.97 -446.09 -2.22 -26.89 16 13 C 0.47 15.65 7.13 87.66 0.63 16.27 16 14 O -0.59 -24.28 15.99 15.96 0.26 -24.02 16 15 C 0.12 2.60 3.37 29.85 0.10 2.70 16 16 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 17 O -0.54 -12.34 12.49 -129.99 -1.62 -13.96 16 18 C -0.10 -1.87 5.00 29.85 0.15 -1.72 16 19 C -0.08 -1.33 4.97 -19.86 -0.10 -1.42 16 20 C -0.07 -1.00 9.40 22.27 0.21 -0.79 16 21 C -0.12 -1.38 10.05 22.27 0.22 -1.16 16 22 C -0.08 -1.14 9.43 22.27 0.21 -0.93 16 23 C -0.20 -3.46 5.37 -19.87 -0.11 -3.57 16 24 C 0.51 9.74 3.32 71.24 0.24 9.98 16 25 F -0.18 -3.24 15.97 44.97 0.72 -2.52 16 26 F -0.18 -3.86 17.23 44.97 0.78 -3.08 16 27 F -0.18 -3.86 17.24 44.97 0.78 -3.08 16 28 C -0.08 -1.40 9.25 22.27 0.21 -1.20 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.75 3.27 -2.39 -0.01 1.75 16 31 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.41 12.36 8.24 -92.71 -0.76 11.59 16 34 H 0.39 7.20 8.79 -74.06 -0.65 6.55 16 35 H 0.10 1.60 8.09 -2.38 -0.02 1.58 16 36 H 0.10 1.75 7.71 -2.39 -0.02 1.73 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.15 1.60 7.16 -2.91 -0.02 1.58 16 40 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -68.46 350.67 3.47 -64.99 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.38 Total: 19.82 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 3.19 Total: -2.33 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.92 Total: -81.29 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.37 Total: -37.99 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 2.27 Total: -8.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.67 Total: 45.48 kcal Total: -68.46 3.47 -64.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188803387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.135 kcal (2) G-P(sol) polarization free energy of solvation -68.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds