Wall clock time and date at job start Tue Mar 31 2020 17:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46850 * 2 1 4 4 C 1.50699 * 109.47254 * 239.99961 * 2 1 3 5 5 H 1.07996 * 119.99777 * 240.00131 * 4 2 1 6 6 C 1.37880 * 119.99941 * 59.99684 * 4 2 1 7 7 N 1.31510 * 120.00136 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99796 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47081 * 90.00334 * 8 6 4 10 10 H 1.48504 * 109.47210 * 210.00073 * 8 6 4 11 11 H 1.48498 * 109.47230 * 330.00198 * 8 6 4 12 12 N 1.46496 * 109.47218 * 119.99640 * 2 1 3 13 13 C 1.34778 * 120.00617 * 275.00336 * 12 2 1 14 14 O 1.21286 * 119.99420 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00512 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47298 * 54.99347 * 15 13 12 17 17 O 1.42900 * 109.47319 * 175.00085 * 15 13 12 18 18 C 1.53000 * 109.46712 * 294.99485 * 15 13 12 19 19 C 1.50701 * 109.46960 * 175.00084 * 18 15 13 20 20 C 1.38253 * 119.99943 * 90.00349 * 19 18 15 21 21 C 1.38221 * 120.00084 * 180.02562 * 20 19 18 22 22 C 1.38255 * 119.99641 * 0.02562 * 21 20 19 23 23 C 1.38207 * 120.00361 * 359.95233 * 22 21 20 24 24 C 1.50706 * 120.00384 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.46715 * 0.02562 * 24 23 22 26 26 F 1.39897 * 109.47068 * 120.00003 * 24 23 22 27 27 F 1.39895 * 109.47042 * 240.00312 * 24 23 22 28 28 C 1.38217 * 119.99988 * 270.21415 * 19 18 15 29 29 H 1.09006 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46995 * 299.99715 * 1 2 3 31 31 H 1.08994 * 109.47681 * 60.00043 * 1 2 3 32 32 H 0.97001 * 120.00435 * 179.97438 * 7 6 4 33 33 H 0.97004 * 120.00289 * 94.99829 * 12 2 1 34 34 H 0.96696 * 114.00248 * 59.99248 * 17 15 13 35 35 H 1.09000 * 109.47001 * 55.00478 * 18 15 13 36 36 H 1.08997 * 109.47587 * 294.99830 * 18 15 13 37 37 H 1.08001 * 120.00326 * 359.97438 * 20 19 18 38 38 H 1.08000 * 120.00185 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.99766 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00232 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 1 3.6102 -1.1960 3.3701 17 8 2.8085 0.2138 4.6501 18 6 1.6426 -1.8020 4.0041 19 6 2.2006 -2.5934 5.1588 20 6 1.9554 -2.1877 6.4575 21 6 2.4677 -2.9133 7.5166 22 6 3.2258 -4.0444 7.2771 23 6 3.4706 -4.4502 5.9788 24 6 4.2965 -5.6834 5.7178 25 9 4.6991 -6.2414 6.9359 26 9 3.5313 -6.6156 5.0086 27 9 5.4251 -5.3384 4.9666 28 6 2.9613 -3.7223 4.9194 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.7094 1.1617 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 1.9921 0.6692 4.8971 35 1 1.4545 -2.4696 3.1632 36 1 0.7094 -1.3269 4.3066 37 1 1.3642 -1.3035 6.6446 38 1 2.2764 -2.5962 8.5311 39 1 3.6264 -4.6111 8.1046 40 1 3.1561 -4.0370 3.9048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188803405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:56 Heat of formation + Delta-G solvation = -225.869376 kcal Electronic energy + Delta-G solvation = -28056.241268 eV Core-core repulsion = 23420.466568 eV Total energy + Delta-G solvation = -4635.774700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39070 -47.92420 -47.83434 -40.14840 -39.15400 -36.54901 -34.82171 -33.44706 -32.44571 -32.05592 -29.87378 -28.25315 -26.32471 -25.32840 -24.75803 -22.62896 -21.53918 -21.19746 -19.59947 -18.70466 -18.60781 -18.52041 -17.80624 -16.59022 -16.29872 -16.16443 -15.65042 -15.30993 -14.89831 -14.77143 -14.72390 -14.55889 -14.29236 -14.18413 -14.03100 -14.00649 -13.78950 -13.49161 -13.26707 -12.96651 -12.86300 -12.48839 -12.14148 -11.78030 -11.73940 -11.54423 -11.41293 -11.15129 -11.00175 -10.82188 -10.73112 -10.38515 -10.29089 -9.50295 -9.30693 -9.11593 -8.82100 -8.60837 -8.03157 -6.17423 -4.27228 0.64673 0.91560 2.41007 3.05712 3.21422 3.26220 3.28982 3.31060 3.46158 3.75181 3.89551 4.18514 4.26109 4.32300 4.46373 4.53940 4.67624 4.87472 4.91037 4.94369 5.10322 5.15165 5.29463 5.37314 5.52228 5.63323 5.74092 5.83178 5.96763 6.17822 6.44891 6.73825 6.86491 7.06647 7.34339 7.43097 7.56639 7.64060 7.83958 8.08216 8.53611 8.70014 8.97531 9.40432 10.88502 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002903 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.055598 B = 9643.924113 C =11169.675499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.703 5.703 13 C 0.472 3.528 14 O -0.546 6.546 15 C 0.096 3.904 16 H 0.120 0.880 17 O -0.537 6.537 18 C -0.111 4.111 19 C -0.071 4.071 20 C -0.070 4.070 21 C -0.120 4.120 22 C -0.079 4.079 23 C -0.183 4.183 24 C 0.508 3.492 25 F -0.180 7.180 26 F -0.177 7.177 27 F -0.175 7.175 28 C -0.067 4.067 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.379 0.621 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -11.794 20.050 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.256 3.744 14 O -0.425 6.425 15 C 0.033 3.967 16 H 0.137 0.863 17 O -0.341 6.341 18 C -0.149 4.149 19 C -0.071 4.071 20 C -0.088 4.088 21 C -0.137 4.137 22 C -0.097 4.097 23 C -0.184 4.184 24 C 0.454 3.546 25 F -0.161 7.161 26 F -0.158 7.158 27 F -0.157 7.157 28 C -0.085 4.085 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.228 0.772 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.764 -11.040 19.875 22.903 hybrid contribution 0.008 -1.019 -1.003 1.430 sum 2.772 -12.059 18.872 22.566 Atomic orbital electron populations 1.22075 0.98364 0.99121 1.00929 1.18773 0.91049 0.94040 0.79988 0.93350 1.21206 1.32612 1.13300 0.90298 0.92020 1.24889 0.94762 0.94912 0.99112 1.69893 1.35821 1.22355 1.23979 0.86440 0.79210 0.79280 0.82142 1.20510 1.21037 1.19799 1.46594 1.64490 1.13510 1.10635 1.21218 0.79367 0.88141 0.85677 1.90684 1.50931 1.15814 1.85047 1.21879 1.00008 0.88452 0.86364 0.86291 1.86565 1.38443 1.57187 1.51950 1.21335 0.98981 0.97630 0.96968 1.19684 0.97659 0.94768 0.94959 1.21307 0.97307 0.98439 0.91788 1.21147 0.97934 0.94935 0.99725 1.20981 0.96904 0.96717 0.95132 1.19904 1.04991 0.97164 0.96344 1.18323 0.78398 0.83868 0.73989 1.93155 1.91329 1.86907 1.44701 1.93225 1.75393 1.68163 1.79018 1.93234 1.53491 1.92088 1.76858 1.20824 0.95150 0.93949 0.98600 0.95417 0.96741 0.89082 0.92511 0.77886 0.77238 0.88727 0.89384 0.84981 0.84825 0.84669 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.46 2.56 -69.09 -0.18 6.28 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.82 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.48 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.70 -13.58 4.97 -54.94 -0.27 -13.85 16 13 C 0.47 8.66 7.13 -10.99 -0.08 8.58 16 14 O -0.55 -12.39 15.99 -14.31 -0.23 -12.62 16 15 C 0.10 1.26 3.37 -27.89 -0.09 1.17 16 16 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 17 O -0.54 -7.21 12.49 -55.09 -0.69 -7.90 16 18 C -0.11 -1.13 5.00 -27.88 -0.14 -1.27 16 19 C -0.07 -0.67 4.97 -104.62 -0.52 -1.19 16 20 C -0.07 -0.59 9.40 -39.58 -0.37 -0.96 16 21 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 22 C -0.08 -0.66 9.43 -39.59 -0.37 -1.03 16 23 C -0.18 -1.76 5.37 -104.62 -0.56 -2.32 16 24 C 0.51 5.10 3.32 36.01 0.12 5.22 16 25 F -0.18 -1.74 15.97 2.25 0.04 -1.70 16 26 F -0.18 -1.88 17.24 2.25 0.04 -1.84 16 27 F -0.18 -1.93 17.23 2.25 0.04 -1.89 16 28 C -0.07 -0.65 9.26 -39.58 -0.37 -1.02 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.32 8.24 -40.82 -0.34 5.98 16 34 H 0.38 4.22 8.79 45.56 0.40 4.62 16 35 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 0.90 7.16 -52.48 -0.38 0.53 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -31.43 357.49 -7.01 -38.44 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.92 Total: 7.99 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.01 Total: -3.46 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.35 Total: -37.71 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.92 Total: -20.52 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.11 Total: -5.44 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.43 -7.01 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188803405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.428 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds