Wall clock time and date at job start Tue Mar 31 2020 17:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46850 * 2 1 4 4 C 1.50699 * 109.47254 * 239.99961 * 2 1 3 5 5 H 1.07996 * 119.99777 * 240.00131 * 4 2 1 6 6 C 1.37880 * 119.99941 * 59.99684 * 4 2 1 7 7 N 1.31510 * 120.00136 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99796 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47081 * 90.00334 * 8 6 4 10 10 H 1.48504 * 109.47210 * 210.00073 * 8 6 4 11 11 H 1.48498 * 109.47230 * 330.00198 * 8 6 4 12 12 N 1.46496 * 109.47218 * 119.99640 * 2 1 3 13 13 C 1.34778 * 120.00617 * 275.00336 * 12 2 1 14 14 O 1.21286 * 119.99420 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00512 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47298 * 54.99347 * 15 13 12 17 17 O 1.42900 * 109.47319 * 175.00085 * 15 13 12 18 18 C 1.53000 * 109.46712 * 294.99485 * 15 13 12 19 19 C 1.50701 * 109.46960 * 175.00084 * 18 15 13 20 20 C 1.38253 * 119.99943 * 90.00349 * 19 18 15 21 21 C 1.38221 * 120.00084 * 180.02562 * 20 19 18 22 22 C 1.38255 * 119.99641 * 0.02562 * 21 20 19 23 23 C 1.38207 * 120.00361 * 359.95233 * 22 21 20 24 24 C 1.50706 * 120.00384 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.46715 * 0.02562 * 24 23 22 26 26 F 1.39897 * 109.47068 * 120.00003 * 24 23 22 27 27 F 1.39895 * 109.47042 * 240.00312 * 24 23 22 28 28 C 1.38217 * 119.99988 * 270.21415 * 19 18 15 29 29 H 1.09006 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46995 * 299.99715 * 1 2 3 31 31 H 1.08994 * 109.47681 * 60.00043 * 1 2 3 32 32 H 0.97001 * 120.00435 * 179.97438 * 7 6 4 33 33 H 0.97004 * 120.00289 * 94.99829 * 12 2 1 34 34 H 0.96696 * 114.00248 * 59.99248 * 17 15 13 35 35 H 1.09000 * 109.47001 * 55.00478 * 18 15 13 36 36 H 1.08997 * 109.47587 * 294.99830 * 18 15 13 37 37 H 1.08001 * 120.00326 * 359.97438 * 20 19 18 38 38 H 1.08000 * 120.00185 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.99766 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00232 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 1 3.6102 -1.1960 3.3701 17 8 2.8085 0.2138 4.6501 18 6 1.6426 -1.8020 4.0041 19 6 2.2006 -2.5934 5.1588 20 6 1.9554 -2.1877 6.4575 21 6 2.4677 -2.9133 7.5166 22 6 3.2258 -4.0444 7.2771 23 6 3.4706 -4.4502 5.9788 24 6 4.2965 -5.6834 5.7178 25 9 4.6991 -6.2414 6.9359 26 9 3.5313 -6.6156 5.0086 27 9 5.4251 -5.3384 4.9666 28 6 2.9613 -3.7223 4.9194 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.7094 1.1617 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 1.9921 0.6692 4.8971 35 1 1.4545 -2.4696 3.1632 36 1 0.7094 -1.3269 4.3066 37 1 1.3642 -1.3035 6.6446 38 1 2.2764 -2.5962 8.5311 39 1 3.6264 -4.6111 8.1046 40 1 3.1561 -4.0370 3.9048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188803405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:55 Heat of formation + Delta-G solvation = -245.711147 kcal Electronic energy + Delta-G solvation = -28057.101672 eV Core-core repulsion = 23420.466568 eV Total energy + Delta-G solvation = -4636.635103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.17465 -48.69887 -48.64194 -41.18426 -40.25453 -37.77746 -36.57479 -34.58912 -33.95959 -32.74519 -31.36485 -29.51680 -27.33731 -27.04361 -25.82329 -23.33116 -22.96510 -22.19358 -21.22024 -19.57958 -19.49430 -19.37400 -19.02205 -17.84739 -17.57979 -17.20858 -16.90167 -16.59834 -16.13998 -15.77006 -15.55584 -15.43886 -15.24244 -15.08748 -15.08501 -15.00718 -14.84934 -14.80724 -14.38503 -14.10068 -13.76119 -13.66988 -13.54116 -13.12996 -12.95308 -12.87615 -12.76545 -12.70033 -12.30706 -12.26275 -12.15074 -12.07183 -11.80251 -11.10554 -10.64899 -10.49721 -10.13613 -9.78683 -9.76101 -8.18172 -6.35586 -0.01039 0.26767 1.44839 1.45860 1.55948 1.65844 1.70369 2.31202 2.47920 2.60932 2.72784 3.01533 3.12560 3.29610 3.42010 3.68123 3.85855 3.91865 4.00189 4.07989 4.19002 4.32324 4.42074 4.58232 4.75878 4.82444 4.84917 4.92478 5.00847 5.09721 5.19213 5.35697 5.43181 5.51279 5.59358 5.68193 5.83536 5.89235 6.10187 6.58596 6.72477 6.93469 7.31391 7.50010 8.87861 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002903 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.055598 B = 9643.924113 C =11169.675499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.698 5.698 13 C 0.470 3.530 14 O -0.594 6.594 15 C 0.114 3.886 16 H 0.131 0.869 17 O -0.544 6.544 18 C -0.101 4.101 19 C -0.080 4.080 20 C -0.074 4.074 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.196 4.196 24 C 0.509 3.491 25 F -0.178 7.178 26 F -0.182 7.182 27 F -0.183 7.183 28 C -0.078 4.078 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.389 0.611 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -13.507 21.330 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.348 5.348 13 C 0.256 3.744 14 O -0.475 6.475 15 C 0.051 3.949 16 H 0.148 0.852 17 O -0.350 6.350 18 C -0.139 4.139 19 C -0.080 4.080 20 C -0.092 4.092 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.197 4.197 24 C 0.455 3.545 25 F -0.159 7.159 26 F -0.164 7.164 27 F -0.165 7.165 28 C -0.096 4.096 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.239 0.761 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.090 -12.795 21.186 24.942 hybrid contribution -0.079 -0.453 -1.308 1.387 sum 3.011 -13.248 19.878 24.077 Atomic orbital electron populations 1.21881 0.97988 0.99634 0.99641 1.18343 0.91309 0.91808 0.81982 0.98623 1.21565 1.32579 1.13576 0.90836 0.90776 1.25777 0.94896 0.95544 1.02307 1.70045 1.37047 1.23873 1.24594 0.85374 0.79010 0.78056 0.78081 1.19578 1.21398 1.18876 1.46318 1.64564 1.14247 1.09705 1.22224 0.77889 0.87654 0.86623 1.90660 1.52827 1.18161 1.85894 1.21787 1.01058 0.88440 0.83579 0.85162 1.86546 1.39497 1.57554 1.51398 1.21220 0.98252 0.96711 0.97683 1.19600 0.98362 0.94906 0.95127 1.21599 0.97089 0.98944 0.91525 1.21477 0.96910 0.94200 1.00903 1.21264 0.96584 0.97013 0.95024 1.19963 1.05553 0.97136 0.97056 1.18411 0.78199 0.84063 0.73823 1.93152 1.91327 1.86936 1.44526 1.93211 1.75488 1.68456 1.79199 1.93215 1.53986 1.92150 1.77123 1.20945 0.95400 0.94250 0.98990 0.93797 0.96627 0.91726 0.92573 0.75842 0.76078 0.88071 0.88581 0.83355 0.82110 0.83210 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.26 71.98 0.67 -5.76 16 2 C 0.27 13.46 2.56 44.25 0.11 13.57 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -28.20 8.73 25.60 0.22 -27.98 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -51.93 11.32 21.45 0.24 -51.68 16 8 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 N -0.70 -26.72 4.97 -446.11 -2.22 -28.94 16 13 C 0.47 17.09 7.13 87.66 0.63 17.72 16 14 O -0.59 -27.47 15.99 15.94 0.25 -27.22 16 15 C 0.11 2.82 3.37 29.85 0.10 2.92 16 16 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 17 O -0.54 -13.70 12.49 -129.99 -1.62 -15.32 16 18 C -0.10 -1.82 5.00 29.85 0.15 -1.68 16 19 C -0.08 -1.33 4.97 -19.87 -0.10 -1.43 16 20 C -0.07 -1.02 9.40 22.27 0.21 -0.81 16 21 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 22 C -0.08 -1.14 9.43 22.27 0.21 -0.93 16 23 C -0.20 -3.43 5.37 -19.86 -0.11 -3.54 16 24 C 0.51 9.59 3.32 71.24 0.24 9.83 16 25 F -0.18 -3.20 15.97 44.97 0.72 -2.48 16 26 F -0.18 -3.69 17.24 44.97 0.78 -2.92 16 27 F -0.18 -3.86 17.23 44.97 0.78 -3.09 16 28 C -0.08 -1.37 9.26 22.27 0.21 -1.16 16 29 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 32 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.41 12.66 8.24 -92.71 -0.76 11.89 16 34 H 0.39 8.08 8.79 -74.06 -0.65 7.43 16 35 H 0.10 1.71 7.71 -2.39 -0.02 1.69 16 36 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.15 1.60 7.16 -2.91 -0.02 1.58 16 40 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -68.89 357.49 3.85 -65.03 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.31 Total: 22.42 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 3.21 Total: 0.79 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -1.97 Total: -80.62 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.37 Total: -42.54 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 2.27 Total: -8.49 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -68.89 3.85 -65.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188803405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.676 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds