Wall clock time and date at job start Tue Mar 31 2020 18:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47626 * 2 1 4 4 C 1.46505 * 119.99665 * 81.47802 * 3 2 1 5 5 C 1.52999 * 109.47472 * 270.00492 * 4 3 2 6 6 H 1.08999 * 109.47219 * 59.99549 * 5 4 3 7 7 O 1.42900 * 109.46866 * 300.00126 * 5 4 3 8 8 C 1.52997 * 109.47200 * 179.97438 * 5 4 3 9 9 F 1.39898 * 109.47053 * 59.99922 * 8 5 4 10 10 F 1.39904 * 109.47058 * 179.97438 * 8 5 4 11 11 F 1.39892 * 109.47224 * 299.99658 * 8 5 4 12 12 C 1.34772 * 120.00379 * 261.48520 * 3 2 1 13 13 O 1.21554 * 119.99938 * 176.01966 * 12 3 2 14 14 C 1.47888 * 120.00020 * 356.01328 * 12 3 2 15 15 C 1.39915 * 120.02373 * 49.09306 * 14 12 3 16 16 C 1.38333 * 120.35788 * 179.78682 * 15 14 12 17 17 C 1.37748 * 120.40821 * 0.47012 * 16 15 14 18 18 C 1.40748 * 120.04253 * 359.78943 * 17 16 15 19 19 C 1.41444 * 120.17693 * 179.97438 * 18 17 16 20 20 H 1.07991 * 120.00041 * 330.96383 * 19 18 17 21 21 C 1.39939 * 119.99654 * 150.96303 * 19 18 17 22 22 N 1.30830 * 120.00070 * 343.76202 * 21 19 18 23 23 Si 1.86802 * 119.99775 * 163.75975 * 21 19 18 24 24 H 1.48503 * 109.47197 * 89.99827 * 23 21 19 25 25 H 1.48504 * 109.47079 * 210.00231 * 23 21 19 26 26 H 1.48499 * 109.47201 * 329.99832 * 23 21 19 27 27 C 1.38991 * 120.02389 * 229.37362 * 14 12 3 28 28 H 1.08997 * 109.47249 * 44.07227 * 1 2 3 29 29 H 1.08999 * 109.47652 * 164.07875 * 1 2 3 30 30 H 1.09001 * 109.46475 * 284.08214 * 1 2 3 31 31 H 1.09007 * 109.46701 * 240.00455 * 2 1 3 32 32 H 1.08998 * 109.47521 * 120.00991 * 2 1 3 33 33 H 1.08999 * 109.47266 * 150.00070 * 4 3 2 34 34 H 1.09003 * 109.46781 * 30.00295 * 4 3 2 35 35 H 0.96698 * 113.99883 * 299.99981 * 7 5 4 36 36 H 1.08002 * 119.82421 * 0.02562 * 15 14 12 37 37 H 1.07994 * 119.79507 * 180.23891 * 16 15 14 38 38 H 1.08003 * 119.97961 * 179.76328 * 17 16 15 39 39 H 0.97001 * 119.99349 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.20747 * 359.95210 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0854 2.1344 1.2548 5 6 0.7637 2.8722 1.4780 6 1 -0.0511 2.1501 1.5307 7 8 0.5322 3.7732 0.3933 8 6 0.8335 3.6582 2.7887 9 9 1.8793 4.5850 2.7216 10 9 -0.3748 4.3333 2.9925 11 9 1.0598 2.7757 3.8503 12 6 2.4061 1.9589 -1.1543 13 8 2.7426 3.1268 -1.1662 14 6 2.4220 1.1719 -2.4062 15 6 1.3056 0.4105 -2.7688 16 6 1.3114 -0.3248 -3.9405 17 6 2.4194 -0.3237 -4.7589 18 6 3.5539 0.4319 -4.4079 19 6 4.6934 0.4346 -5.2458 20 1 4.9163 -0.4274 -5.8569 21 6 5.5319 1.5543 -5.2828 22 7 5.1148 2.6999 -4.8080 23 14 7.2468 1.4134 -6.0101 24 1 7.1943 1.7138 -7.4634 25 1 8.1509 2.3802 -5.3369 26 1 7.7583 0.0340 -5.8079 27 6 3.5483 1.1834 -3.2206 28 1 -0.3633 0.7383 -0.7148 29 1 -0.3634 -0.9882 -0.2819 30 1 -0.3632 0.2501 0.9968 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 2.9002 2.8564 1.2021 34 1 2.2620 1.4470 2.0821 35 1 1.2195 4.4450 0.2865 36 1 0.4330 0.3998 -2.1324 37 1 0.4432 -0.9062 -4.2135 38 1 2.4179 -0.9033 -5.6702 39 1 5.6963 3.4759 -4.8334 40 1 4.4138 1.7666 -2.9428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189893756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:32 Heat of formation + Delta-G solvation = -216.494557 kcal Electronic energy + Delta-G solvation = -29353.029964 eV Core-core repulsion = 24717.661787 eV Total energy + Delta-G solvation = -4635.368177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.32111 -47.84312 -47.78759 -39.95361 -37.68271 -36.79725 -35.57989 -33.70101 -31.59740 -30.17298 -29.82453 -29.38796 -26.11964 -25.29104 -23.45260 -22.65327 -21.58264 -21.04450 -19.32595 -18.78718 -18.42140 -18.40468 -17.53756 -16.47923 -16.23456 -15.88779 -15.34836 -15.02569 -14.93985 -14.63965 -14.47246 -14.31676 -14.22896 -13.95223 -13.93824 -13.86883 -13.52641 -13.36917 -13.01147 -12.75705 -12.58558 -12.46278 -12.10275 -11.88084 -11.75524 -11.46036 -11.26217 -11.11725 -10.95455 -10.66779 -10.59278 -10.47544 -10.17656 -9.67764 -9.24927 -9.04788 -8.53580 -7.63601 -7.50058 -6.79891 -4.44477 2.24855 2.46291 2.77350 3.06162 3.08034 3.12563 3.14801 3.42589 3.57789 3.73709 3.79833 3.90718 4.27100 4.53917 4.57117 4.64289 5.04837 5.10978 5.27166 5.40888 5.49098 5.54373 5.64196 5.79785 6.00063 6.11134 6.19308 6.42115 6.64033 6.70678 6.94821 7.00679 7.17244 7.27587 7.35151 7.58335 7.71984 7.78624 7.92520 8.12682 8.46382 8.71060 8.78490 8.81383 10.16043 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003407 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.863390 B = 8216.620873 C = 9196.232728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 N -0.608 5.608 4 C 0.084 3.916 5 C 0.055 3.945 6 H 0.139 0.861 7 O -0.519 6.519 8 C 0.419 3.581 9 F -0.181 7.181 10 F -0.178 7.178 11 F -0.182 7.182 12 C 0.577 3.423 13 O -0.534 6.534 14 C -0.117 4.117 15 C -0.223 4.223 16 C -0.098 4.098 17 C -0.209 4.209 18 C 0.107 3.893 19 C -0.467 4.467 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.787 5.787 23 Si 0.907 3.093 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.392 0.608 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -2.562 13.529 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.341 5.341 4 C -0.041 4.041 5 C -0.009 4.009 6 H 0.157 0.843 7 O -0.325 6.325 8 C 0.364 3.636 9 F -0.162 7.162 10 F -0.159 7.159 11 F -0.164 7.164 12 C 0.369 3.631 13 O -0.411 6.411 14 C -0.121 4.121 15 C -0.243 4.243 16 C -0.116 4.116 17 C -0.229 4.229 18 C 0.104 3.896 19 C -0.496 4.496 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.411 5.411 23 Si 0.731 3.269 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.123 4.123 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.243 0.757 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.591 -2.007 13.474 15.133 hybrid contribution 1.098 0.573 0.094 1.242 sum -5.493 -1.435 13.569 14.709 Atomic orbital electron populations 1.22405 0.96318 1.02965 1.01503 1.21838 0.94221 0.82108 1.04360 1.47785 1.66323 1.13959 1.06056 1.21970 0.95831 0.97575 0.88687 1.23805 1.03154 0.91778 0.82128 0.84331 1.86682 1.51843 1.46129 1.47854 1.21819 0.73833 0.79395 0.88577 1.93196 1.58490 1.68056 1.96505 1.93205 1.45450 1.81497 1.95758 1.93176 1.94466 1.68478 1.60251 1.19012 0.74180 0.86617 0.83298 1.90666 1.47875 1.16689 1.85835 1.19322 0.97521 1.00708 0.94503 1.20723 0.98399 1.04606 1.00541 1.20466 0.97142 0.99153 0.94870 1.21144 0.94021 1.07503 1.00227 1.17526 0.91739 0.89716 0.90607 1.19538 1.06692 1.01089 1.22281 0.90172 1.25926 0.99848 0.94552 0.94095 1.69809 1.36442 1.00224 1.34641 0.86330 0.81555 0.79426 0.79562 1.19441 1.20055 1.18443 1.21333 0.96664 1.01117 0.93162 0.91125 0.91278 0.93292 0.87442 0.91291 0.88455 0.88690 0.75685 0.87687 0.88889 0.88649 0.90535 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.39 37.16 0.31 -1.56 16 2 C 0.10 1.21 5.64 -4.04 -0.02 1.19 16 3 N -0.61 -9.16 2.45 -174.78 -0.43 -9.59 16 4 C 0.08 1.03 4.91 -4.04 -0.02 1.01 16 5 C 0.05 0.64 3.08 -26.73 -0.08 0.56 16 6 H 0.14 1.42 6.28 -51.93 -0.33 1.10 16 7 O -0.52 -7.50 12.01 -48.12 -0.58 -8.07 16 8 C 0.42 4.67 2.85 37.16 0.11 4.77 16 9 F -0.18 -2.17 16.42 2.25 0.04 -2.14 16 10 F -0.18 -2.15 17.26 2.25 0.04 -2.11 16 11 F -0.18 -1.90 16.80 2.25 0.04 -1.86 16 12 C 0.58 11.66 6.79 -12.31 -0.08 11.58 16 13 O -0.53 -12.15 15.17 -7.57 -0.11 -12.27 16 14 C -0.12 -2.61 4.90 -105.04 -0.51 -3.13 16 15 C -0.22 -4.47 7.52 -38.92 -0.29 -4.76 16 16 C -0.10 -2.00 10.01 -39.73 -0.40 -2.40 16 17 C -0.21 -4.80 9.78 -38.81 -0.38 -5.18 16 18 C 0.11 2.72 5.52 -106.87 -0.59 2.13 16 19 C -0.47 -11.97 9.04 -37.73 -0.34 -12.31 16 20 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 21 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.79 -20.62 11.18 55.55 0.62 -20.00 16 23 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.10 -2.60 8.33 -38.44 -0.32 -2.92 16 28 H 0.07 0.92 6.43 -51.93 -0.33 0.59 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.44 6.90 -51.93 -0.36 0.08 16 31 H 0.11 1.57 5.31 -51.93 -0.28 1.29 16 32 H 0.07 0.67 8.02 -51.93 -0.42 0.26 16 33 H 0.10 1.32 7.14 -51.93 -0.37 0.95 16 34 H 0.09 0.89 7.64 -51.93 -0.40 0.49 16 35 H 0.39 5.46 7.98 45.56 0.36 5.83 16 36 H 0.11 1.82 4.18 -52.49 -0.22 1.60 16 37 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.12 3.27 6.45 -52.49 -0.34 2.93 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -29.00 340.85 -6.48 -35.48 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -3.49 Total: 11.30 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.72 Total: -9.27 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.19 Total: -29.59 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.69 Total: -20.34 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.11 Total: -6.11 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.00 -6.48 -35.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189893756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.010 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds