Wall clock time and date at job start Tue Mar 31 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47626 * 2 1 4 4 C 1.46505 * 119.99665 * 81.47802 * 3 2 1 5 5 C 1.52999 * 109.47472 * 270.00492 * 4 3 2 6 6 H 1.08999 * 109.47219 * 59.99549 * 5 4 3 7 7 O 1.42900 * 109.46866 * 300.00126 * 5 4 3 8 8 C 1.52997 * 109.47200 * 179.97438 * 5 4 3 9 9 F 1.39898 * 109.47053 * 59.99922 * 8 5 4 10 10 F 1.39904 * 109.47058 * 179.97438 * 8 5 4 11 11 F 1.39892 * 109.47224 * 299.99658 * 8 5 4 12 12 C 1.34772 * 120.00379 * 261.48520 * 3 2 1 13 13 O 1.21554 * 119.99938 * 176.01966 * 12 3 2 14 14 C 1.47888 * 120.00020 * 356.01328 * 12 3 2 15 15 C 1.39915 * 120.02373 * 49.09306 * 14 12 3 16 16 C 1.38333 * 120.35788 * 179.78682 * 15 14 12 17 17 C 1.37748 * 120.40821 * 0.47012 * 16 15 14 18 18 C 1.40748 * 120.04253 * 359.78943 * 17 16 15 19 19 C 1.41444 * 120.17693 * 179.97438 * 18 17 16 20 20 H 1.07991 * 120.00041 * 330.96383 * 19 18 17 21 21 C 1.39939 * 119.99654 * 150.96303 * 19 18 17 22 22 N 1.30830 * 120.00070 * 343.76202 * 21 19 18 23 23 Si 1.86802 * 119.99775 * 163.75975 * 21 19 18 24 24 H 1.48503 * 109.47197 * 89.99827 * 23 21 19 25 25 H 1.48504 * 109.47079 * 210.00231 * 23 21 19 26 26 H 1.48499 * 109.47201 * 329.99832 * 23 21 19 27 27 C 1.38991 * 120.02389 * 229.37362 * 14 12 3 28 28 H 1.08997 * 109.47249 * 44.07227 * 1 2 3 29 29 H 1.08999 * 109.47652 * 164.07875 * 1 2 3 30 30 H 1.09001 * 109.46475 * 284.08214 * 1 2 3 31 31 H 1.09007 * 109.46701 * 240.00455 * 2 1 3 32 32 H 1.08998 * 109.47521 * 120.00991 * 2 1 3 33 33 H 1.08999 * 109.47266 * 150.00070 * 4 3 2 34 34 H 1.09003 * 109.46781 * 30.00295 * 4 3 2 35 35 H 0.96698 * 113.99883 * 299.99981 * 7 5 4 36 36 H 1.08002 * 119.82421 * 0.02562 * 15 14 12 37 37 H 1.07994 * 119.79507 * 180.23891 * 16 15 14 38 38 H 1.08003 * 119.97961 * 179.76328 * 17 16 15 39 39 H 0.97001 * 119.99349 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.20747 * 359.95210 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0854 2.1344 1.2548 5 6 0.7637 2.8722 1.4780 6 1 -0.0511 2.1501 1.5307 7 8 0.5322 3.7732 0.3933 8 6 0.8335 3.6582 2.7887 9 9 1.8793 4.5850 2.7216 10 9 -0.3748 4.3333 2.9925 11 9 1.0598 2.7757 3.8503 12 6 2.4061 1.9589 -1.1543 13 8 2.7426 3.1268 -1.1662 14 6 2.4220 1.1719 -2.4062 15 6 1.3056 0.4105 -2.7688 16 6 1.3114 -0.3248 -3.9405 17 6 2.4194 -0.3237 -4.7589 18 6 3.5539 0.4319 -4.4079 19 6 4.6934 0.4346 -5.2458 20 1 4.9163 -0.4274 -5.8569 21 6 5.5319 1.5543 -5.2828 22 7 5.1148 2.6999 -4.8080 23 14 7.2468 1.4134 -6.0101 24 1 7.1943 1.7138 -7.4634 25 1 8.1509 2.3802 -5.3369 26 1 7.7583 0.0340 -5.8079 27 6 3.5483 1.1834 -3.2206 28 1 -0.3633 0.7383 -0.7148 29 1 -0.3634 -0.9882 -0.2819 30 1 -0.3632 0.2501 0.9968 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 2.9002 2.8564 1.2021 34 1 2.2620 1.4470 2.0821 35 1 1.2195 4.4450 0.2865 36 1 0.4330 0.3998 -2.1324 37 1 0.4432 -0.9062 -4.2135 38 1 2.4179 -0.9033 -5.6702 39 1 5.6963 3.4759 -4.8334 40 1 4.4138 1.7666 -2.9428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189893756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:27 Heat of formation + Delta-G solvation = -233.944218 kcal Electronic energy + Delta-G solvation = -29353.786638 eV Core-core repulsion = 24717.661787 eV Total energy + Delta-G solvation = -4636.124851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -51.23009 -48.74526 -48.70494 -41.36076 -39.13878 -38.25010 -36.86548 -35.49229 -32.79110 -31.62557 -31.41203 -30.76260 -27.42097 -26.93907 -24.67595 -23.69761 -22.94115 -22.82112 -20.62479 -19.74393 -19.65511 -19.35278 -19.03418 -17.86974 -17.59651 -17.25147 -16.71196 -16.57981 -16.26267 -15.76782 -15.54700 -15.38152 -15.33741 -15.13909 -14.88988 -14.86049 -14.84526 -14.60481 -14.34272 -14.32139 -14.08173 -13.65582 -13.54075 -13.19636 -13.01690 -12.82506 -12.72602 -12.59926 -12.37096 -12.09835 -11.95269 -11.89266 -11.65271 -11.38408 -11.05147 -10.67152 -9.78636 -9.38866 -9.31479 -8.63000 -6.37028 0.57343 1.02106 1.37333 1.43422 1.47542 1.52773 1.86209 2.02026 2.20503 2.64107 2.68850 2.76747 2.85833 3.33773 3.58667 3.63993 3.65896 3.92119 4.12352 4.31314 4.40175 4.48657 4.55288 4.56651 4.75013 4.88006 4.93386 5.07955 5.12180 5.21265 5.33091 5.42155 5.51856 5.58744 5.88678 5.99084 6.04178 6.20039 6.28942 6.36031 6.62112 6.91576 6.96255 7.21310 8.34839 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003407 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.863390 B = 8216.620873 C = 9196.232728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 N -0.595 5.595 4 C 0.080 3.920 5 C 0.059 3.941 6 H 0.161 0.839 7 O -0.538 6.538 8 C 0.428 3.572 9 F -0.188 7.188 10 F -0.182 7.182 11 F -0.173 7.173 12 C 0.571 3.429 13 O -0.572 6.572 14 C -0.124 4.124 15 C -0.201 4.201 16 C -0.096 4.096 17 C -0.217 4.217 18 C 0.075 3.925 19 C -0.504 4.504 20 H 0.082 0.918 21 C 0.032 3.968 22 N -0.832 5.832 23 Si 0.979 3.021 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.254 1.254 27 C -0.134 4.134 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.391 0.609 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.285 0.715 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 -4.404 15.166 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.033 4.033 3 N -0.326 5.326 4 C -0.043 4.043 5 C -0.003 4.003 6 H 0.178 0.822 7 O -0.345 6.345 8 C 0.372 3.628 9 F -0.169 7.169 10 F -0.163 7.163 11 F -0.155 7.155 12 C 0.362 3.638 13 O -0.452 6.452 14 C -0.127 4.127 15 C -0.220 4.220 16 C -0.114 4.114 17 C -0.237 4.237 18 C 0.073 3.927 19 C -0.534 4.534 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.800 3.200 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.177 1.177 27 C -0.155 4.155 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.152 0.848 35 H 0.242 0.758 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.288 -3.899 15.147 17.701 hybrid contribution 1.418 1.049 -0.257 1.782 sum -6.870 -2.850 14.890 16.645 Atomic orbital electron populations 1.22362 0.94409 1.03478 1.02525 1.22106 0.95727 0.80320 1.05137 1.47699 1.64560 1.14973 1.05393 1.22195 0.95864 0.98055 0.88205 1.23882 1.03286 0.91565 0.81597 0.82219 1.86649 1.52073 1.46606 1.49140 1.21621 0.73457 0.79189 0.88495 1.93192 1.58815 1.68404 1.96538 1.93200 1.45736 1.81636 1.95766 1.93196 1.94385 1.68077 1.59831 1.18794 0.74714 0.86023 0.84293 1.90644 1.49844 1.18151 1.86552 1.19642 0.97163 1.00639 0.95300 1.21172 0.98284 1.02201 1.00348 1.20912 0.97512 0.98841 0.94114 1.21407 0.94153 1.06981 1.01124 1.17859 0.92978 0.90874 0.90955 1.19814 1.08237 1.01760 1.23540 0.89995 1.26779 1.03536 0.93744 0.94149 1.69914 1.37933 1.01039 1.36907 0.85251 0.76366 0.79526 0.78881 1.18560 1.19782 1.17704 1.21135 0.97165 1.02575 0.94589 0.93370 0.89260 0.90713 0.89754 0.87575 0.90115 0.84779 0.75846 0.84250 0.84700 0.87648 0.90491 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.39 71.98 0.60 -2.29 16 2 C 0.09 1.90 5.64 86.38 0.49 2.39 16 3 N -0.59 -16.87 2.45 -825.17 -2.02 -18.89 16 4 C 0.08 1.79 4.91 86.38 0.42 2.22 16 5 C 0.06 1.24 3.08 30.59 0.09 1.33 16 6 H 0.16 2.63 6.28 -2.39 -0.01 2.62 16 7 O -0.54 -15.11 12.01 -136.66 -1.64 -16.75 16 8 C 0.43 8.60 2.85 71.98 0.21 8.80 16 9 F -0.19 -4.32 16.42 44.97 0.74 -3.58 16 10 F -0.18 -4.04 17.26 44.97 0.78 -3.27 16 11 F -0.17 -3.07 16.80 44.97 0.76 -2.31 16 12 C 0.57 23.27 6.79 86.80 0.59 23.86 16 13 O -0.57 -27.05 15.17 8.44 0.13 -26.92 16 14 C -0.12 -5.61 4.90 -20.14 -0.10 -5.71 16 15 C -0.20 -7.70 7.52 22.70 0.17 -7.53 16 16 C -0.10 -3.71 10.01 22.18 0.22 -3.49 16 17 C -0.22 -9.95 9.78 22.77 0.22 -9.73 16 18 C 0.08 4.01 5.52 -21.32 -0.12 3.89 16 19 C -0.50 -27.07 9.04 23.47 0.21 -26.86 16 20 H 0.08 4.16 7.90 -2.92 -0.02 4.14 16 21 C 0.03 1.67 5.14 85.25 0.44 2.10 16 22 N -0.83 -46.34 11.18 21.83 0.24 -46.10 16 23 Si 0.98 39.19 29.59 68.60 2.03 41.22 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 27 C -0.13 -7.16 8.33 23.01 0.19 -6.97 16 28 H 0.05 1.06 6.43 -2.39 -0.02 1.05 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 0.92 6.90 -2.39 -0.02 0.90 16 31 H 0.08 2.25 5.31 -2.38 -0.01 2.23 16 32 H 0.11 1.56 8.02 -2.39 -0.02 1.54 16 33 H 0.08 2.13 7.14 -2.39 -0.02 2.12 16 34 H 0.13 1.95 7.64 -2.39 -0.02 1.94 16 35 H 0.39 11.10 7.98 -74.06 -0.59 10.51 16 36 H 0.14 4.37 4.18 -2.91 -0.01 4.35 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.28 14.67 8.30 -92.71 -0.77 13.90 16 40 H 0.09 5.10 6.45 -2.91 -0.02 5.08 16 Total: -1.00 -67.89 340.85 5.18 -62.71 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.53 Total: 31.88 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 3.64 Total: -17.98 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -1.78 Total: -64.98 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.51 Total: -43.67 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 2.27 Total: -9.16 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -67.89 5.18 -62.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189893756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.239 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds