Wall clock time and date at job start Tue Mar 31 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47412 * 2 1 4 4 C 1.46503 * 119.99813 * 264.10941 * 3 2 1 5 5 C 1.53002 * 109.47174 * 271.09945 * 4 3 2 6 6 H 1.09007 * 109.46550 * 303.59100 * 5 4 3 7 7 O 1.42893 * 109.47577 * 63.59185 * 5 4 3 8 8 C 1.52998 * 109.47132 * 183.59679 * 5 4 3 9 9 F 1.39897 * 109.47193 * 299.99648 * 8 5 4 10 10 F 1.39901 * 109.47019 * 59.99515 * 8 5 4 11 11 F 1.39899 * 109.47183 * 179.97438 * 8 5 4 12 12 C 1.34776 * 120.00217 * 84.10837 * 3 2 1 13 13 O 1.21545 * 119.99671 * 184.23178 * 12 3 2 14 14 C 1.47880 * 119.99863 * 4.23430 * 12 3 2 15 15 C 1.39925 * 120.02376 * 238.26240 * 14 12 3 16 16 C 1.38328 * 120.35815 * 179.74459 * 15 14 12 17 17 C 1.37753 * 120.41288 * 0.55826 * 16 15 14 18 18 C 1.40756 * 120.03700 * 359.70506 * 17 16 15 19 19 C 1.41437 * 120.17657 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99765 * 151.46150 * 19 18 17 21 21 C 1.39941 * 119.99899 * 331.46229 * 19 18 17 22 22 N 1.30826 * 119.99950 * 172.72360 * 21 19 18 23 23 Si 1.86806 * 119.99860 * 352.71919 * 21 19 18 24 24 H 1.48496 * 109.46957 * 95.72045 * 23 21 19 25 25 H 1.48504 * 109.46850 * 215.71785 * 23 21 19 26 26 H 1.48500 * 109.47121 * 335.72085 * 23 21 19 27 27 C 1.38993 * 120.02839 * 58.54729 * 14 12 3 28 28 H 1.08997 * 109.47459 * 185.29302 * 1 2 3 29 29 H 1.09006 * 109.47293 * 305.29827 * 1 2 3 30 30 H 1.09003 * 109.46960 * 65.29058 * 1 2 3 31 31 H 1.08999 * 109.47837 * 239.99111 * 2 1 3 32 32 H 1.09005 * 109.46888 * 119.99803 * 2 1 3 33 33 H 1.08998 * 109.47476 * 151.09283 * 4 3 2 34 34 H 1.09004 * 109.46905 * 31.09273 * 4 3 2 35 35 H 0.96703 * 113.99942 * 59.99830 * 7 5 4 36 36 H 1.08004 * 119.81569 * 0.02562 * 15 14 12 37 37 H 1.07995 * 119.79253 * 180.28542 * 16 15 14 38 38 H 1.07997 * 119.98104 * 179.71894 * 17 16 15 39 39 H 0.96998 * 120.00027 * 179.97438 * 22 21 19 40 40 H 1.08004 * 120.20239 * 359.95322 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3853 2.0283 -1.2621 5 6 3.8590 1.7523 -1.5672 6 1 4.4725 2.0922 -0.7328 7 8 4.0510 0.3494 -1.7593 8 6 4.2658 2.5015 -2.8376 9 9 3.4783 2.0654 -3.9085 10 9 4.0777 3.8750 -2.6495 11 9 5.6134 2.2495 -3.1163 12 6 2.1301 2.0565 1.1610 13 8 2.4615 3.2259 1.1543 14 6 1.8495 1.3747 2.4429 15 6 0.8582 1.8702 3.2971 16 6 0.5864 1.2348 4.4954 17 6 1.2959 0.1140 4.8671 18 6 2.3005 -0.3958 4.0233 19 6 3.0304 -1.5467 4.4017 20 1 3.4387 -2.2001 3.6450 21 6 3.2235 -1.8386 5.7566 22 7 3.7726 -2.9723 6.1097 23 14 2.6973 -0.6093 7.0611 24 1 1.3436 -0.9639 7.5580 25 1 3.6627 -0.6409 8.1891 26 1 2.6673 0.7540 6.4731 27 6 2.5743 0.2446 2.8029 28 1 -0.3634 -1.0232 0.0948 29 1 -0.3634 0.5938 0.8388 30 1 -0.3633 0.4296 -0.9336 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.2267 3.1035 -1.1787 34 1 1.7670 1.6312 -2.0672 35 1 3.5344 -0.0222 -2.4874 36 1 0.2991 2.7508 3.0172 37 1 -0.1838 1.6224 5.1457 38 1 1.0810 -0.3739 5.8063 39 1 3.9068 -3.1745 7.0489 40 1 3.3430 -0.1391 2.1484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189893776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:36 Heat of formation + Delta-G solvation = -215.436592 kcal Electronic energy + Delta-G solvation = -29178.085581 eV Core-core repulsion = 24542.763281 eV Total energy + Delta-G solvation = -4635.322300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.38965 -47.92372 -47.83507 -40.11922 -38.05132 -37.28249 -35.54553 -33.71235 -31.92259 -30.67914 -30.25830 -29.50619 -26.18839 -25.33302 -23.72351 -22.91588 -22.08497 -20.83552 -19.59470 -18.88380 -18.69104 -18.50009 -17.55384 -16.49117 -16.30778 -16.27677 -16.02653 -15.33855 -14.86037 -14.69129 -14.55238 -14.51673 -14.29410 -14.00931 -13.99390 -13.85968 -13.79351 -13.63397 -13.33650 -12.89617 -12.68175 -12.52743 -12.25737 -12.15562 -11.90065 -11.75382 -11.57814 -11.24827 -11.13758 -10.84162 -10.70391 -10.62567 -9.91364 -9.79817 -9.58745 -9.14800 -8.67901 -7.87922 -7.76525 -7.01804 -4.63338 1.99472 2.33492 2.46141 2.96864 3.00441 3.09793 3.16481 3.24296 3.41494 3.58240 3.69804 3.88605 4.12117 4.36884 4.45450 4.51018 4.98700 5.09061 5.21509 5.27483 5.39350 5.46189 5.61000 5.79531 5.85313 6.04135 6.06992 6.20550 6.33497 6.49574 6.53052 6.68282 6.90306 6.94093 7.15957 7.32089 7.34779 7.55913 7.64381 7.83125 8.20192 8.38270 8.44259 8.65384 10.00099 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.003340 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.342901 B = 8381.987292 C = 8792.487582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.602 5.602 4 C 0.084 3.916 5 C 0.055 3.945 6 H 0.146 0.854 7 O -0.521 6.521 8 C 0.423 3.577 9 F -0.185 7.185 10 F -0.176 7.176 11 F -0.176 7.176 12 C 0.572 3.428 13 O -0.543 6.543 14 C -0.091 4.091 15 C -0.196 4.196 16 C -0.082 4.082 17 C -0.214 4.214 18 C 0.087 3.913 19 C -0.439 4.439 20 H 0.093 0.907 21 C 0.080 3.920 22 N -0.811 5.811 23 Si 0.909 3.091 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.234 1.234 27 C -0.176 4.176 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.381 0.619 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.287 0.713 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 5.103 -14.699 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.335 5.335 4 C -0.041 4.041 5 C -0.008 4.008 6 H 0.163 0.837 7 O -0.326 6.326 8 C 0.368 3.632 9 F -0.167 7.167 10 F -0.157 7.157 11 F -0.157 7.157 12 C 0.363 3.637 13 O -0.420 6.420 14 C -0.094 4.094 15 C -0.217 4.217 16 C -0.100 4.100 17 C -0.233 4.233 18 C 0.084 3.916 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.138 4.138 22 N -0.435 5.435 23 Si 0.737 3.263 24 H -0.198 1.198 25 H -0.222 1.222 26 H -0.157 1.157 27 C -0.196 4.196 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.230 0.770 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.910 5.574 -14.061 15.403 hybrid contribution -0.432 0.381 -0.065 0.580 sum -3.342 5.955 -14.125 15.689 Atomic orbital electron populations 1.22180 0.95922 1.02605 1.01990 1.21865 0.94320 0.81383 1.04764 1.47769 1.65761 1.15059 1.04903 1.21964 0.92055 1.01786 0.88274 1.23802 1.00799 0.82908 0.93284 0.83677 1.86809 1.70577 1.18500 1.56669 1.21624 0.75460 0.78806 0.87323 1.93166 1.74406 1.89330 1.59780 1.93221 1.94869 1.32477 1.95165 1.93219 1.33968 1.93878 1.94618 1.19040 0.74911 0.85652 0.84107 1.90721 1.47437 1.16401 1.87407 1.19248 0.99870 0.97200 0.93085 1.20236 1.02698 1.02269 0.96448 1.20479 0.98515 0.95360 0.95629 1.21005 1.00455 1.00686 1.01119 1.17622 0.90723 0.91962 0.91300 1.19527 1.28392 1.05559 0.93256 0.88934 1.26172 0.92278 0.95324 1.00071 1.69613 1.32584 1.21281 1.19993 0.86398 0.77582 0.83720 0.78585 1.19803 1.22158 1.15719 1.20960 1.02417 0.96041 1.00151 0.91359 0.91698 0.93247 0.90525 0.87863 0.87548 0.88989 0.76996 0.88302 0.88150 0.88629 0.90284 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.18 37.15 0.38 -1.57 16 2 C 0.10 1.23 5.62 -4.05 -0.02 1.21 16 3 N -0.60 -8.41 2.45 -174.79 -0.43 -8.84 16 4 C 0.08 0.93 4.86 -4.04 -0.02 0.91 16 5 C 0.06 0.60 3.22 -26.73 -0.09 0.51 16 6 H 0.15 1.83 8.14 -51.92 -0.42 1.40 16 7 O -0.52 -5.30 12.08 -35.23 -0.43 -5.72 16 8 C 0.42 4.40 2.85 37.16 0.11 4.50 16 9 F -0.19 -1.72 16.48 2.25 0.04 -1.68 16 10 F -0.18 -2.02 16.73 2.25 0.04 -1.99 16 11 F -0.18 -2.05 17.26 2.25 0.04 -2.01 16 12 C 0.57 10.45 7.07 -12.31 -0.09 10.36 16 13 O -0.54 -11.23 16.64 5.33 0.09 -11.14 16 14 C -0.09 -1.83 4.62 -105.04 -0.48 -2.31 16 15 C -0.20 -3.93 9.78 -38.92 -0.38 -4.31 16 16 C -0.08 -1.65 10.01 -39.73 -0.40 -2.05 16 17 C -0.21 -4.78 6.66 -38.81 -0.26 -5.04 16 18 C 0.09 2.04 5.26 -106.87 -0.56 1.47 16 19 C -0.44 -11.11 9.65 -37.73 -0.36 -11.48 16 20 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 21 C 0.08 2.01 5.50 -17.34 -0.10 1.91 16 22 N -0.81 -20.83 13.93 55.55 0.77 -20.06 16 23 Si 0.91 19.93 24.35 -169.99 -4.14 15.79 16 24 H -0.27 -5.73 6.92 56.52 0.39 -5.34 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.23 -5.24 5.96 56.52 0.34 -4.90 16 27 C -0.18 -3.74 7.41 -38.44 -0.28 -4.02 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.74 7.06 -51.93 -0.37 0.37 16 32 H 0.10 1.55 4.81 -51.93 -0.25 1.30 16 33 H 0.11 1.29 6.89 -51.93 -0.36 0.94 16 34 H 0.09 0.74 7.84 -51.93 -0.41 0.33 16 35 H 0.38 2.34 8.60 45.56 0.39 2.74 16 36 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 37 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.10 2.13 3.76 -52.49 -0.20 1.93 16 39 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.11 2.21 7.53 -52.48 -0.40 1.82 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -28.60 343.86 -5.13 -33.73 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.74 Total: 6.65 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.56 Total: -9.90 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: 0.35 Total: -28.90 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.34 Total: -16.86 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.11 Total: -5.68 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.14 Total: 15.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.60 -5.13 -33.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189893776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.708 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds