Wall clock time and date at job start Tue Mar 31 2020 17:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99707 * 2 1 4 4 C 1.52998 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47130 * 175.00083 * 4 3 2 6 6 C 1.53004 * 109.46910 * 54.99890 * 4 3 2 7 7 O 1.45204 * 109.47202 * 295.00001 * 4 3 2 8 8 C 1.34827 * 116.99907 * 209.99825 * 7 4 3 9 9 O 1.21576 * 120.00280 * 0.02562 * 8 7 4 10 10 C 1.46953 * 120.00026 * 180.02562 * 8 7 4 11 11 C 1.43196 * 119.99846 * 352.26072 * 10 8 7 12 12 N 5.30499 * 120.97790 * 104.17055 * 2 1 3 13 13 C 1.37953 * 120.00210 * 172.53498 * 10 8 7 14 14 C 1.46347 * 119.99756 * 348.97580 * 13 10 8 15 15 C 1.40317 * 120.12656 * 315.86669 * 14 13 10 16 16 C 1.36526 * 119.87592 * 179.76377 * 15 14 13 17 17 C 1.39289 * 120.12482 * 0.48761 * 16 15 14 18 18 O 1.35495 * 119.87576 * 179.74007 * 17 16 15 19 19 C 1.34746 * 116.99887 * 177.01802 * 18 17 16 20 20 H 1.08007 * 119.99476 * 4.99458 * 19 18 17 21 21 C 1.38772 * 120.00067 * 184.99608 * 19 18 17 22 22 N 1.31463 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00046 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47150 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47226 * 120.00270 * 23 21 19 26 26 H 1.48506 * 109.46911 * 239.99886 * 23 21 19 27 27 C 1.39284 * 120.24659 * 359.76616 * 17 16 15 28 28 C 1.36526 * 120.12756 * 359.97438 * 27 17 16 29 29 H 1.09008 * 109.46676 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47494 * 299.99513 * 1 2 3 31 31 H 1.08995 * 109.47620 * 60.00219 * 1 2 3 32 32 H 1.09001 * 109.47046 * 60.00098 * 3 2 1 33 33 H 1.08996 * 109.47230 * 300.00225 * 3 2 1 34 34 H 1.09001 * 109.46868 * 60.00159 * 6 4 3 35 35 H 1.09002 * 109.46530 * 179.97438 * 6 4 3 36 36 H 1.08994 * 109.46936 * 300.00025 * 6 4 3 37 37 H 1.07998 * 120.00092 * 168.97391 * 13 10 8 38 38 H 1.08000 * 120.06094 * 359.97438 * 15 14 13 39 39 H 1.07994 * 119.93776 * 180.22792 * 16 15 14 40 40 H 0.97009 * 120.00298 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.93451 * 179.97438 * 27 17 16 42 42 H 1.07999 * 120.06479 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1767 -0.0889 6 6 3.9789 0.3195 -1.1807 7 8 3.9717 0.5701 1.2417 8 6 5.1881 0.9223 1.7046 9 8 5.8651 1.7219 1.0879 10 6 5.6954 0.3398 2.9547 11 6 4.8384 -0.4708 3.7664 12 7 4.1595 -1.1135 4.4099 13 6 6.9956 0.5785 3.3491 14 6 7.9392 1.2021 2.4204 15 6 7.9956 0.7790 1.0838 16 6 8.8744 1.3676 0.2205 17 6 9.7211 2.3795 0.6669 18 8 10.5950 2.9565 -0.1928 19 6 11.3429 3.9709 0.2841 20 1 11.2889 4.2363 1.3297 21 6 12.1822 4.6745 -0.5680 22 7 12.2474 4.3517 -1.8407 23 14 13.2195 6.0802 0.0933 24 1 12.9649 6.2417 1.5474 25 1 14.6571 5.7812 -0.1279 26 1 12.8605 7.3356 -0.6141 27 6 9.6732 2.7999 1.9940 28 6 8.7947 2.2220 2.8646 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.6514 0.7810 -2.1123 35 1 5.0656 0.2339 -1.1804 36 1 3.5359 -0.6723 -1.0911 37 1 7.3172 0.3052 4.3433 38 1 7.3426 -0.0086 0.7376 39 1 8.9160 1.0452 -0.8093 40 1 12.8344 4.8433 -2.4364 41 1 10.3324 3.5846 2.3348 42 1 8.7587 2.5485 3.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195380386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:49 Heat of formation + Delta-G solvation = -73.812321 kcal Electronic energy + Delta-G solvation = -27330.145945 eV Core-core repulsion = 23242.821674 eV Total energy + Delta-G solvation = -4087.324271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.49463 -39.23635 -38.27476 -37.23037 -36.47454 -36.01178 -33.34998 -32.55672 -32.28004 -30.50915 -28.79290 -27.58415 -26.02488 -25.81226 -24.44852 -22.46745 -22.07284 -20.91150 -20.22194 -18.98832 -18.20807 -17.23506 -17.01807 -16.51569 -15.99530 -15.67019 -15.50537 -15.19684 -14.83746 -14.67219 -14.13011 -13.86507 -13.80785 -13.71298 -13.45772 -13.21079 -12.94227 -12.90542 -12.76864 -12.61394 -12.50183 -12.24756 -12.00022 -11.90491 -11.63611 -11.55757 -11.20407 -11.09963 -11.05372 -10.80884 -10.57176 -10.44050 -10.10281 -9.92569 -9.65655 -9.37212 -8.94040 -8.29141 -7.14482 -6.71723 -4.23473 0.44725 2.22396 2.33040 2.56917 2.63983 2.97596 3.00734 3.01872 3.07486 3.51244 3.67105 3.77677 4.05177 4.44820 4.58105 4.73001 4.82389 4.89329 5.00633 5.05775 5.08293 5.11764 5.16409 5.20349 5.38795 5.41809 5.46788 5.54097 5.64997 5.79749 5.82530 5.93730 6.07542 6.18112 6.31166 6.49675 6.57464 6.78550 6.87175 6.88327 7.12553 7.17625 7.25261 7.61877 7.65723 7.75099 8.01015 8.72994 9.41117 10.44541 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.002708 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.196295 B =10337.527792 C =11558.222218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.091 3.909 5 H 0.102 0.898 6 C -0.165 4.165 7 O -0.346 6.346 8 C 0.512 3.488 9 O -0.475 6.475 10 C -0.175 4.175 11 C 0.273 3.727 12 N -0.437 5.437 13 C 0.129 3.871 14 C -0.224 4.224 15 C 0.017 3.983 16 C -0.200 4.200 17 C 0.179 3.821 18 O -0.156 6.156 19 C -0.389 4.389 20 H 0.100 0.900 21 C 0.041 3.959 22 N -0.846 5.846 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.252 4.252 28 C -0.017 4.017 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.275 0.725 41 H 0.130 0.870 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.423 -4.111 4.307 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.012 4.012 4 C 0.036 3.964 5 H 0.120 0.880 6 C -0.223 4.223 7 O -0.264 6.264 8 C 0.356 3.644 9 O -0.362 6.362 10 C -0.180 4.180 11 C -0.041 4.041 12 N -0.114 5.114 13 C 0.106 3.894 14 C -0.225 4.225 15 C -0.001 4.001 16 C -0.220 4.220 17 C 0.121 3.879 18 O -0.056 6.056 19 C -0.465 4.465 20 H 0.118 0.882 21 C -0.166 4.166 22 N -0.478 5.478 23 Si 0.770 3.230 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.271 4.271 28 C -0.035 4.035 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.977 -4.950 4.559 16.419 hybrid contribution 0.418 1.327 -0.066 1.392 sum -14.559 -3.624 4.493 15.661 Atomic orbital electron populations 1.22744 0.81190 1.02834 0.99825 1.87974 1.19418 1.27029 1.95350 1.22670 0.91766 0.85631 1.01161 1.22759 0.92489 0.98632 0.82533 0.88047 1.22090 1.02447 1.01256 0.96459 1.86745 1.34669 1.65110 1.39879 1.20518 0.79763 0.79992 0.84161 1.91041 1.56208 1.32008 1.56976 1.16984 0.93017 1.11714 0.96276 1.25258 0.93147 0.92757 0.92968 1.81135 1.08565 1.11482 1.10219 1.23055 0.88396 0.81287 0.96669 1.18139 1.03800 1.06247 0.94305 1.20351 0.93122 0.95870 0.90803 1.19791 1.00947 1.01012 1.00222 1.19678 0.87758 0.91091 0.89326 1.83869 1.42435 1.42656 1.36595 1.21601 1.20070 1.08696 0.96111 0.88246 1.25443 0.97451 0.98652 0.95013 1.70005 1.35392 1.38908 1.03535 0.85566 0.78986 0.79286 0.79197 1.18766 1.19861 1.19858 1.20754 1.05503 1.06919 0.93944 1.20570 0.91582 0.93277 0.98092 0.89599 0.94112 0.94144 0.92413 0.91172 0.91021 0.91523 0.90828 0.84135 0.87532 0.86334 0.91493 0.85190 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.35 9.79 -38.79 -0.38 -4.73 16 3 C 0.06 0.65 5.82 37.16 0.22 0.86 16 4 C 0.09 1.09 2.98 -26.73 -0.08 1.02 16 5 H 0.10 1.23 7.16 -51.93 -0.37 0.86 16 6 C -0.17 -1.88 9.35 37.16 0.35 -1.54 16 7 O -0.35 -5.00 9.41 -43.62 -0.41 -5.41 16 8 C 0.51 7.65 6.90 34.26 0.24 7.88 16 9 O -0.48 -8.07 11.61 -19.32 -0.22 -8.30 16 10 C -0.17 -2.35 5.74 -104.55 -0.60 -2.95 16 11 C 0.27 3.89 14.99 -22.51 -0.34 3.55 16 12 N -0.44 -6.94 18.53 41.79 0.77 -6.17 16 13 C 0.13 1.58 9.52 -36.43 -0.35 1.24 16 14 C -0.22 -3.49 4.56 -105.07 -0.48 -3.97 16 15 C 0.02 0.30 6.62 -39.42 -0.26 0.04 16 16 C -0.20 -4.00 9.93 -39.81 -0.40 -4.39 16 17 C 0.18 4.01 6.67 -38.80 -0.26 3.75 16 18 O -0.16 -4.13 9.74 1.07 0.01 -4.12 16 19 C -0.39 -10.05 9.48 30.93 0.29 -9.76 16 20 H 0.10 2.34 5.17 -52.48 -0.27 2.07 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.85 -23.19 13.67 55.49 0.76 -22.43 16 23 Si 0.95 18.97 29.55 -169.99 -5.02 13.95 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 27 C -0.25 -4.96 9.10 -39.81 -0.36 -5.32 16 28 C -0.02 -0.27 9.75 -39.41 -0.38 -0.65 16 29 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.11 1.66 7.09 -52.49 -0.37 1.28 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.13 2.53 5.59 -52.49 -0.29 2.24 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -30.82 373.60 -5.32 -36.15 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.06 Total: 3.35 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.40 Total: -7.93 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 1.53 Total: -28.60 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.00 Total: -22.55 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.82 -5.32 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195380386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.664 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds