Wall clock time and date at job start Tue Mar 31 2020 17:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99979 * 2 1 4 4 C 1.53007 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46961 * 185.00104 * 4 3 2 6 6 C 1.52997 * 109.47116 * 305.00452 * 4 3 2 7 7 O 1.45198 * 109.46932 * 64.99886 * 4 3 2 8 8 C 1.34832 * 116.99871 * 149.99986 * 7 4 3 9 9 O 1.21574 * 120.00347 * 0.02562 * 8 7 4 10 10 C 1.46962 * 120.00231 * 180.27864 * 8 7 4 11 11 C 1.43205 * 119.99479 * 352.72523 * 10 8 7 12 12 N 5.30167 * 123.96043 * 249.51753 * 2 1 3 13 13 C 1.37941 * 120.00248 * 172.72873 * 10 8 7 14 14 C 1.46350 * 119.99920 * 349.50072 * 13 10 8 15 15 C 1.40315 * 120.12379 * 315.92147 * 14 13 10 16 16 C 1.36534 * 119.87456 * 179.74148 * 15 14 13 17 17 C 1.39281 * 120.12305 * 0.51155 * 16 15 14 18 18 O 1.35489 * 119.87782 * 179.74306 * 17 16 15 19 19 C 1.34748 * 117.00540 * 174.55566 * 18 17 16 20 20 H 1.08005 * 119.99774 * 5.06205 * 19 18 17 21 21 C 1.38773 * 120.00274 * 185.06665 * 19 18 17 22 22 N 1.31468 * 119.99964 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46980 * 59.99944 * 23 21 19 25 25 H 1.48502 * 109.46986 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46810 * 299.99722 * 23 21 19 27 27 C 1.39283 * 120.24816 * 359.75995 * 17 16 15 28 28 C 1.36528 * 120.12792 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47337 * 59.99826 * 1 2 3 30 30 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46661 * 299.99756 * 1 2 3 32 32 H 1.09000 * 109.47365 * 60.00573 * 3 2 1 33 33 H 1.08998 * 109.47423 * 299.99783 * 3 2 1 34 34 H 1.09000 * 109.47491 * 179.97438 * 6 4 3 35 35 H 1.09003 * 109.47150 * 299.99778 * 6 4 3 36 36 H 1.09002 * 109.47392 * 59.99429 * 6 4 3 37 37 H 1.07994 * 120.00161 * 169.50219 * 13 10 8 38 38 H 1.08007 * 120.06413 * 359.97301 * 15 14 13 39 39 H 1.07997 * 119.94022 * 180.27466 * 16 15 14 40 40 H 0.97008 * 120.00066 * 180.02562 * 22 21 19 41 41 H 1.07999 * 119.93800 * 179.97438 * 27 17 16 42 42 H 1.08005 * 120.06623 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 0.0889 6 6 3.9791 0.3192 1.1806 7 8 3.9718 0.5699 -1.2416 8 6 5.1881 0.9221 -1.7047 9 8 5.8656 1.7209 -1.0875 10 6 5.6927 0.3445 -2.9583 11 6 4.9657 -0.7052 -3.6066 12 7 4.3906 -1.5387 -4.1193 13 6 6.8665 0.8135 -3.5105 14 6 7.4881 2.0295 -2.9843 15 6 6.7009 3.1545 -2.6954 16 6 7.2854 4.2844 -2.1997 17 6 8.6619 4.3253 -1.9905 18 8 9.2374 5.4509 -1.5033 19 6 10.5528 5.3909 -1.2170 20 1 11.1170 4.5011 -1.4544 21 6 11.1824 6.4723 -0.6171 22 7 10.4957 7.5556 -0.3285 23 14 13.0058 6.3888 -0.2196 24 1 13.7758 6.1742 -1.4710 25 1 13.4335 7.6629 0.4120 26 1 13.2574 5.2631 0.7157 27 6 9.4489 3.2134 -2.2808 28 6 8.8744 2.0764 -2.7719 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 5.0656 0.2328 1.1799 35 1 3.6515 0.7807 2.1122 36 1 3.5359 -0.6726 1.0910 37 1 7.3268 0.2835 -4.3312 38 1 5.6341 3.1255 -2.8615 39 1 6.6799 5.1494 -1.9728 40 1 10.9359 8.3117 0.0905 41 1 10.5158 3.2507 -2.1171 42 1 9.4856 1.2147 -2.9962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195380390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:57 Heat of formation + Delta-G solvation = -73.270863 kcal Electronic energy + Delta-G solvation = -27304.693950 eV Core-core repulsion = 23217.393159 eV Total energy + Delta-G solvation = -4087.300791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -40.50061 -39.23896 -38.27541 -37.23363 -36.47118 -36.00938 -33.35040 -32.55740 -32.28303 -30.51160 -28.79911 -27.58914 -26.01232 -25.81854 -24.44563 -22.47603 -22.08094 -20.90621 -20.22738 -18.97854 -18.22722 -17.23732 -17.02566 -16.51193 -15.98268 -15.61971 -15.53019 -15.27436 -14.81716 -14.63985 -14.13079 -13.89178 -13.73937 -13.72508 -13.52222 -13.19504 -13.01778 -12.85980 -12.72162 -12.65462 -12.50485 -12.22008 -12.02532 -11.90035 -11.71166 -11.46867 -11.17759 -11.08210 -11.05930 -10.86215 -10.61113 -10.47325 -10.07304 -9.92121 -9.66230 -9.37503 -8.93128 -8.28406 -7.14742 -6.71376 -4.23357 0.44594 2.22142 2.33057 2.56580 2.64341 2.97959 3.00961 3.03350 3.05312 3.51424 3.67275 3.78063 4.05217 4.44689 4.57966 4.73223 4.82139 4.88620 5.00901 5.06333 5.08700 5.12381 5.16847 5.19712 5.39010 5.42071 5.46399 5.53690 5.63522 5.77583 5.82007 5.93522 6.06845 6.15476 6.30656 6.49037 6.57341 6.78171 6.86591 6.88682 7.11866 7.17236 7.25009 7.62138 7.65419 7.75028 8.00891 8.73036 9.40901 10.44686 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.002714 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.210219 B =10312.951319 C =11498.851156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.064 3.936 4 C 0.091 3.909 5 H 0.103 0.897 6 C -0.165 4.165 7 O -0.346 6.346 8 C 0.511 3.489 9 O -0.475 6.475 10 C -0.174 4.174 11 C 0.272 3.728 12 N -0.437 5.437 13 C 0.128 3.872 14 C -0.224 4.224 15 C 0.019 3.981 16 C -0.202 4.202 17 C 0.179 3.821 18 O -0.156 6.156 19 C -0.390 4.390 20 H 0.099 0.901 21 C 0.042 3.958 22 N -0.847 5.847 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.252 4.252 28 C -0.016 4.016 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.276 0.724 41 H 0.130 0.870 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 -10.049 -0.242 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.012 4.012 4 C 0.036 3.964 5 H 0.121 0.879 6 C -0.222 4.222 7 O -0.264 6.264 8 C 0.356 3.644 9 O -0.362 6.362 10 C -0.180 4.180 11 C -0.042 4.042 12 N -0.114 5.114 13 C 0.106 3.894 14 C -0.226 4.226 15 C 0.000 4.000 16 C -0.221 4.221 17 C 0.122 3.878 18 O -0.055 6.055 19 C -0.465 4.465 20 H 0.116 0.884 21 C -0.165 4.165 22 N -0.479 5.479 23 Si 0.769 3.231 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.191 1.191 27 C -0.271 4.271 28 C -0.035 4.035 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.828 -10.722 -0.602 15.976 hybrid contribution 0.830 0.551 0.598 1.161 sum -10.999 -10.171 -0.004 14.981 Atomic orbital electron populations 1.22745 0.81172 1.02811 0.99867 1.87970 1.19438 1.27070 1.95362 1.22672 0.91682 0.85613 1.01263 1.22764 0.92555 0.98610 0.82494 0.87941 1.22086 1.02315 1.01265 0.96562 1.86744 1.34206 1.65576 1.39869 1.20520 0.79765 0.79275 0.84881 1.91041 1.56117 1.31346 1.57703 1.16982 1.01032 1.01961 0.97985 1.25265 0.93271 0.92476 0.93150 1.81142 1.08894 1.11362 1.09959 1.23049 0.87186 0.89083 0.90118 1.18136 0.93800 0.93812 1.16823 1.20339 0.97085 0.91208 0.91322 1.19791 0.92133 0.99969 1.10197 1.19669 0.92073 0.86028 0.90064 1.83860 1.25511 1.29350 1.66828 1.21503 0.81322 1.03296 1.40408 0.88359 1.25437 1.00988 0.94420 0.95655 1.69988 1.37117 1.04115 1.36687 0.85701 0.79652 0.78430 0.79309 1.19166 1.20044 1.19142 1.20749 1.00787 0.94403 1.11189 1.20572 0.92355 0.96447 0.94114 0.94049 0.89630 0.94150 0.91144 0.92278 0.91674 0.91043 0.90889 0.84135 0.87588 0.86358 0.91393 0.85215 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.35 9.79 -38.80 -0.38 -4.73 16 3 C 0.06 0.65 5.82 37.16 0.22 0.86 16 4 C 0.09 1.09 2.98 -26.73 -0.08 1.01 16 5 H 0.10 1.24 7.16 -51.93 -0.37 0.87 16 6 C -0.16 -1.88 9.35 37.16 0.35 -1.53 16 7 O -0.35 -4.99 9.41 -43.64 -0.41 -5.40 16 8 C 0.51 7.64 6.92 34.26 0.24 7.88 16 9 O -0.47 -8.06 11.51 -19.32 -0.22 -8.29 16 10 C -0.17 -2.35 5.75 -104.55 -0.60 -2.95 16 11 C 0.27 3.90 14.99 -22.50 -0.34 3.56 16 12 N -0.44 -6.96 18.53 41.80 0.77 -6.18 16 13 C 0.13 1.58 9.53 -36.43 -0.35 1.23 16 14 C -0.22 -3.49 4.59 -105.07 -0.48 -3.97 16 15 C 0.02 0.33 6.57 -39.42 -0.26 0.07 16 16 C -0.20 -4.00 9.93 -39.81 -0.40 -4.40 16 17 C 0.18 4.01 6.66 -38.81 -0.26 3.75 16 18 O -0.16 -4.12 9.74 1.08 0.01 -4.11 16 19 C -0.39 -10.06 9.48 30.93 0.29 -9.77 16 20 H 0.10 2.31 5.18 -52.48 -0.27 2.04 16 21 C 0.04 1.07 5.50 -17.51 -0.10 0.98 16 22 N -0.85 -23.19 13.67 55.49 0.76 -22.43 16 23 Si 0.95 18.96 29.55 -169.99 -5.02 13.94 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.25 -4.95 9.10 -39.81 -0.36 -5.32 16 28 C -0.02 -0.26 9.75 -39.42 -0.38 -0.65 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.87 7.56 -51.93 -0.39 0.47 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.11 1.62 7.05 -52.48 -0.37 1.25 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.13 2.52 5.61 -52.49 -0.29 2.22 16 42 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -30.82 373.48 -5.32 -36.15 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.06 Total: 3.33 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.40 Total: -7.89 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 1.53 Total: -28.61 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.00 Total: -22.54 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.82 -5.32 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195380390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.123 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds