Wall clock time and date at job start Tue Mar 31 2020 17:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70147 * 2 1 4 4 C 1.53190 * 109.58918 * 120.35477 * 2 1 3 5 5 C 1.53043 * 109.30978 * 65.15355 * 4 2 1 6 6 C 1.53033 * 109.53956 * 61.36727 * 5 4 2 7 7 H 1.08994 * 109.50018 * 58.58721 * 6 5 4 8 8 C 1.50699 * 109.49979 * 178.68540 * 6 5 4 9 9 O 1.20821 * 120.00544 * 119.99657 * 8 6 5 10 10 O 1.34228 * 119.99677 * 299.99866 * 8 6 5 11 11 C 1.53626 * 109.24141 * 298.50795 * 6 5 4 12 12 N 1.46924 * 108.54189 * 54.85814 * 11 6 5 13 13 S 1.65600 * 120.63246 * 126.36744 * 12 11 6 14 14 O 1.42100 * 104.27763 * 153.64783 * 13 12 11 15 15 O 1.42108 * 104.27406 * 25.79281 * 13 12 11 16 16 C 1.81396 * 104.45219 * 269.72167 * 13 12 11 17 17 C 1.52994 * 109.47195 * 182.07541 * 16 13 12 18 18 C 1.50696 * 115.55099 * 306.54180 * 17 16 13 19 19 H 1.08006 * 119.99988 * 102.26226 * 18 17 16 20 20 C 1.37876 * 120.00329 * 282.53823 * 18 17 16 21 21 N 1.31514 * 119.99854 * 195.50505 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 15.49865 * 20 18 17 23 23 H 1.48494 * 109.47027 * 84.45743 * 22 20 18 24 24 H 1.48496 * 109.47317 * 204.46232 * 22 20 18 25 25 H 1.48505 * 109.47113 * 324.46081 * 22 20 18 26 26 C 1.53003 * 117.51773 * 92.24804 * 17 16 13 27 27 C 1.53003 * 60.00034 * 107.47919 * 26 17 16 28 28 H 1.08996 * 109.46909 * 180.35465 * 1 2 3 29 29 H 1.09000 * 109.46688 * 300.35453 * 1 2 3 30 30 H 1.08995 * 109.47100 * 60.35490 * 1 2 3 31 31 H 1.09004 * 109.49701 * 185.10190 * 4 2 1 32 32 H 1.08998 * 109.49536 * 305.17207 * 4 2 1 33 33 H 1.09001 * 109.45807 * 181.38910 * 5 4 2 34 34 H 1.08996 * 109.45838 * 301.35602 * 5 4 2 35 35 H 0.96701 * 117.00560 * 180.02562 * 10 8 6 36 36 H 1.09002 * 109.74032 * 295.11734 * 11 6 5 37 37 H 1.08996 * 109.66628 * 174.55032 * 11 6 5 38 38 H 1.09003 * 109.46837 * 62.07069 * 16 13 12 39 39 H 1.08999 * 109.46943 * 302.07917 * 16 13 12 40 40 H 0.97011 * 119.99682 * 179.97438 * 21 20 18 41 41 H 1.09005 * 117.49466 * 214.96877 * 26 17 16 42 42 H 1.08993 * 117.49741 * 359.97438 * 26 17 16 43 43 H 1.09001 * 117.49566 * 252.50720 * 27 26 17 44 44 H 1.08999 * 117.51831 * 107.48273 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 1.6415 -2.2041 1.1701 6 6 2.2801 -2.8463 -0.0635 7 1 3.3640 -2.7474 -0.0053 8 6 1.9099 -4.3061 -0.1192 9 8 1.3029 -4.7397 -1.0696 10 8 2.2546 -5.1247 0.8872 11 6 1.7643 -2.1399 -1.3264 12 7 2.0225 -0.6995 -1.1945 13 16 2.8471 0.1212 -2.3730 14 8 2.3826 1.4593 -2.2585 15 8 2.6170 -0.6357 -3.5535 16 6 4.5867 0.0062 -1.8721 17 6 5.4558 0.7795 -2.8658 18 6 5.2781 0.4037 -4.3143 19 1 4.6944 1.0347 -4.9683 20 6 5.8559 -0.7487 -4.8034 21 7 5.9678 -0.9283 -6.1014 22 14 6.4799 -2.0546 -3.6225 23 1 5.3566 -2.9417 -3.2270 24 1 7.5359 -2.8595 -4.2875 25 1 7.0433 -1.4007 -2.4141 26 6 5.7593 2.2451 -2.5483 27 6 6.8575 1.1889 -2.4090 28 1 -0.3633 -1.0276 0.0064 29 1 -0.3633 0.5193 0.8868 30 1 -0.3633 0.5083 -0.8931 31 1 3.1298 -0.6503 1.2912 32 1 1.6080 -0.2781 2.1368 33 1 1.9844 -2.7202 2.0668 34 1 0.5566 -2.2815 1.0990 35 1 1.9956 -6.0528 0.8066 36 1 0.6930 -2.3109 -1.4324 37 1 2.2863 -2.5260 -2.2018 38 1 4.8926 -1.0399 -1.8590 39 1 4.7069 0.4323 -0.8760 40 1 6.3747 -1.7389 -6.4456 41 1 5.8304 2.9375 -3.3872 42 1 5.3394 2.6588 -1.6315 43 1 7.1603 0.9078 -1.4003 44 1 7.6511 1.1861 -3.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263111074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:47 Heat of formation + Delta-G solvation = -138.508846 kcal Electronic energy + Delta-G solvation = -28771.798849 eV Core-core repulsion = 24817.113078 eV Total energy + Delta-G solvation = -3954.685771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.74537 -38.72518 -37.08759 -36.46055 -36.28325 -35.13945 -32.95392 -32.27492 -32.18374 -28.65011 -27.89901 -25.54153 -24.88541 -23.91390 -21.64865 -21.50804 -20.18886 -19.17160 -18.49185 -17.99569 -17.47440 -16.73216 -16.54682 -15.87329 -15.69679 -15.30237 -15.06651 -14.97354 -14.24921 -13.92474 -13.86724 -13.75129 -13.42292 -13.18663 -13.04447 -12.59703 -12.47989 -12.42036 -12.27505 -11.76322 -11.69925 -11.49658 -11.42077 -11.27289 -11.12231 -11.04546 -10.94151 -10.88917 -10.69123 -10.58597 -10.44194 -10.43337 -10.13219 -9.76961 -9.17727 -8.97689 -8.57757 -8.46018 -6.21119 -4.25009 0.86494 2.01256 2.73101 3.18447 3.26121 3.27862 3.29650 4.26406 4.33598 4.46468 4.52261 4.58928 4.66061 4.78570 4.86730 4.96005 5.00629 5.07629 5.21059 5.23734 5.35715 5.37707 5.45332 5.57956 5.64847 5.69926 5.75470 5.77451 5.87360 5.91403 5.94549 6.04860 6.19660 6.20932 6.26207 6.30594 6.44660 6.58710 6.72457 6.85557 7.08685 7.60810 7.68701 8.34991 8.87400 9.43958 10.90864 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.005810 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.781331 B = 4818.119357 C = 5849.105668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.102 0.898 4 C -0.129 4.129 5 C -0.107 4.107 6 C -0.100 4.100 7 H 0.115 0.885 8 C 0.486 3.514 9 O -0.507 6.507 10 O -0.516 6.516 11 C 0.136 3.864 12 N -1.006 6.006 13 S 2.615 3.385 14 O -0.961 6.961 15 O -0.925 6.925 16 C -0.583 4.583 17 C 0.002 3.998 18 C -0.522 4.522 19 H 0.086 0.914 20 C 0.104 3.896 21 N -0.872 5.872 22 Si 0.847 3.153 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.249 1.249 26 C -0.176 4.176 27 C -0.174 4.174 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 -3.744 19.253 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.120 0.880 4 C -0.168 4.168 5 C -0.145 4.145 6 C -0.121 4.121 7 H 0.133 0.867 8 C 0.327 3.673 9 O -0.394 6.394 10 O -0.328 6.328 11 C 0.010 3.990 12 N -0.841 5.841 13 S 2.711 3.289 14 O -0.952 6.952 15 O -0.915 6.915 16 C -0.714 4.714 17 C -0.001 4.001 18 C -0.559 4.559 19 H 0.104 0.896 20 C -0.102 4.102 21 N -0.506 5.506 22 Si 0.673 3.327 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.173 1.173 26 C -0.213 4.213 27 C -0.212 4.212 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.268 0.732 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.740 -3.151 18.080 19.918 hybrid contribution 0.831 -1.897 0.967 2.286 sum -6.908 -5.048 19.047 20.880 Atomic orbital electron populations 1.22129 0.94888 1.02363 1.02610 1.20991 0.95137 0.96301 0.84034 0.87982 1.21979 1.01957 0.94793 0.98099 1.21497 1.01122 0.96040 0.95803 1.21606 1.04046 0.86832 0.99640 0.86733 1.23351 0.75400 0.89391 0.79194 1.90762 1.37736 1.77360 1.33563 1.84525 1.75569 1.25362 1.47364 1.21244 1.02728 0.79191 0.95839 1.58446 1.71206 1.17159 1.37335 1.05097 0.76522 0.73883 0.73354 1.93499 1.79387 1.36197 1.86083 1.93606 1.83917 1.71163 1.42803 1.30382 1.24077 1.08860 1.08059 1.18790 0.94342 0.93082 0.93844 1.20294 1.35804 1.09749 0.90040 0.89639 1.24808 0.93437 0.97467 0.94501 1.69921 1.41612 1.26771 1.12265 0.87348 0.79319 0.82750 0.83254 1.19695 1.21153 1.17280 1.22944 1.04085 0.92556 1.01744 1.22977 0.93412 1.04580 1.00277 0.92134 0.91593 0.91728 0.90904 0.89981 0.90316 0.90746 0.73215 0.89840 0.87887 0.86970 0.87322 0.92194 0.88808 0.90391 0.91036 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.02 37.16 0.34 -1.32 16 2 C 0.14 1.62 3.09 -67.60 -0.21 1.42 16 3 H 0.10 1.19 7.10 -51.93 -0.37 0.82 16 4 C -0.13 -1.09 5.55 -26.61 -0.15 -1.24 16 5 C -0.11 -0.91 4.90 -26.69 -0.13 -1.04 16 6 C -0.10 -1.13 2.79 -91.43 -0.26 -1.38 16 7 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 8 C 0.49 5.68 7.63 36.01 0.27 5.95 16 9 O -0.51 -7.63 16.69 -18.75 -0.31 -7.94 16 10 O -0.52 -4.42 13.30 -39.25 -0.52 -4.95 16 11 C 0.14 1.95 4.55 -3.49 -0.02 1.94 16 12 N -1.01 -14.99 2.92 -106.23 -0.31 -15.30 16 13 S 2.61 52.53 5.00 -107.50 -0.54 51.99 16 14 O -0.96 -20.48 16.72 -57.54 -0.96 -21.44 16 15 O -0.92 -22.70 15.78 -57.54 -0.91 -23.61 16 16 C -0.58 -11.27 5.75 37.15 0.21 -11.05 16 17 C 0.00 0.05 0.93 -155.66 -0.15 -0.10 16 18 C -0.52 -14.57 7.82 -34.44 -0.27 -14.84 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.10 2.99 5.46 -17.82 -0.10 2.89 16 21 N -0.87 -26.50 13.96 55.43 0.77 -25.73 16 22 Si 0.85 20.59 24.97 -169.99 -4.25 16.35 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.25 -5.49 6.09 56.52 0.34 -5.15 16 26 C -0.18 -3.55 9.92 -26.73 -0.27 -3.81 16 27 C -0.17 -3.54 8.34 -26.73 -0.22 -3.77 16 28 H 0.06 0.58 5.71 -51.93 -0.30 0.28 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.07 0.60 6.49 -51.93 -0.34 0.26 16 35 H 0.41 1.85 9.10 45.56 0.41 2.27 16 36 H 0.08 1.14 7.31 -51.93 -0.38 0.76 16 37 H 0.10 1.72 7.09 -51.93 -0.37 1.36 16 38 H 0.11 2.14 5.26 -51.92 -0.27 1.87 16 39 H 0.11 1.63 8.08 -51.92 -0.42 1.21 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -36.07 359.28 -8.41 -44.49 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.87 Total: 7.06 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -0.94 Total: -26.34 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.46 Total: -41.03 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -2.70 Total: -57.94 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.25 Total: 16.35 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.54 Total: 51.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.07 -8.41 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263111074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.021 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds