Wall clock time and date at job start Tue Mar 31 2020 17:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.50099 * 2 1 4 4 C 1.53042 * 109.49333 * 239.93505 * 2 1 3 5 5 C 1.53041 * 109.53607 * 178.68477 * 4 2 1 6 6 H 1.08995 * 109.49777 * 301.41349 * 5 4 2 7 7 C 1.50703 * 109.49901 * 181.31480 * 5 4 2 8 8 O 1.20824 * 119.99638 * 0.16983 * 7 5 4 9 9 O 1.34223 * 120.00199 * 180.15845 * 7 5 4 10 10 C 1.53190 * 109.31521 * 61.36736 * 5 4 2 11 11 N 1.46928 * 108.89063 * 305.29532 * 10 5 4 12 12 S 1.65602 * 120.63032 * 233.66960 * 11 10 5 13 13 O 1.42096 * 104.28059 * 206.06896 * 12 11 10 14 14 O 1.42102 * 104.27870 * 333.93315 * 12 11 10 15 15 C 1.81405 * 104.44691 * 89.99850 * 12 11 10 16 16 C 1.52996 * 109.47209 * 173.93503 * 15 12 11 17 17 C 1.50707 * 115.54799 * 39.91806 * 16 15 12 18 18 H 1.08002 * 119.99796 * 264.78424 * 17 16 15 19 19 C 1.37872 * 120.00109 * 84.78234 * 17 16 15 20 20 N 1.31517 * 119.99951 * 353.01162 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 173.00431 * 19 17 16 22 22 H 1.48495 * 109.47161 * 60.00252 * 21 19 17 23 23 H 1.48504 * 109.47264 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47145 * 300.00152 * 21 19 17 25 25 C 1.52998 * 117.50233 * 254.20973 * 16 15 12 26 26 C 1.52992 * 60.00037 * 252.50780 * 25 16 15 27 27 C 1.47208 * 118.55600 * 53.53891 * 11 10 5 28 28 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47026 * 300.06656 * 1 2 3 30 30 H 1.08998 * 109.47144 * 60.06131 * 1 2 3 31 31 H 1.09004 * 109.46303 * 58.66728 * 4 2 1 32 32 H 1.09004 * 109.45171 * 298.69538 * 4 2 1 33 33 H 0.96703 * 116.99927 * 180.02562 * 9 7 5 34 34 H 1.09001 * 109.58670 * 65.15096 * 10 5 4 35 35 H 1.08997 * 109.59221 * 185.43503 * 10 5 4 36 36 H 1.08996 * 109.47357 * 293.93877 * 15 12 11 37 37 H 1.09003 * 109.46813 * 53.93992 * 15 12 11 38 38 H 0.97000 * 119.99719 * 185.02481 * 20 19 17 39 39 H 1.09001 * 117.50114 * 0.02562 * 25 16 15 40 40 H 1.09000 * 117.49897 * 145.01568 * 25 16 15 41 41 H 1.09002 * 117.50022 * 252.50560 * 26 25 16 42 42 H 1.09006 * 117.52016 * 107.47972 * 26 25 16 43 43 H 1.09006 * 109.53185 * 186.67739 * 27 11 10 44 44 H 1.08992 * 109.68106 * 66.36766 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7228 -1.2486 5 6 3.5708 -0.6947 -1.2663 6 1 3.9158 0.3391 -1.2541 7 6 4.0720 -1.3784 -2.5123 8 8 3.2863 -1.8381 -3.3067 9 8 5.3912 -1.4764 -2.7396 10 6 4.1052 -1.4268 -0.0313 11 7 3.5074 -0.8304 1.1710 12 16 4.4645 -0.2872 2.4085 13 8 3.6344 -0.3754 3.5584 14 8 5.6508 -1.0619 2.3001 15 6 4.7973 1.4475 1.9952 16 6 5.5549 2.1100 3.1476 17 6 6.6143 1.2611 3.8021 18 1 6.3798 0.6961 4.6921 19 6 7.8827 1.2058 3.2646 20 7 8.1327 1.7807 2.1085 21 14 9.2463 0.3144 4.1786 22 1 8.8711 -1.1109 4.3600 23 1 10.5051 0.3995 3.3954 24 1 9.4469 0.9464 5.5074 25 6 4.7777 3.0816 4.0380 26 6 5.8163 3.6143 3.0489 27 6 2.0413 -0.7243 1.2493 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5149 0.8894 30 1 -0.3633 0.5129 -0.8905 31 1 1.6581 -0.2239 -2.1391 32 1 1.6966 -1.7570 -1.2356 33 1 5.6647 -1.9231 -3.5525 34 1 3.8375 -2.4819 -0.0876 35 1 5.1898 -1.3270 0.0119 36 1 5.4003 1.4958 1.0886 37 1 3.8543 1.9696 1.8327 38 1 9.0045 1.6803 1.6954 39 1 3.7265 3.2486 3.8031 40 1 5.0324 3.1068 5.0975 41 1 6.7543 3.9900 3.4577 42 1 5.4489 4.1319 2.1628 43 1 1.7638 -0.1586 2.1388 44 1 1.6032 -1.7211 1.2988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263179149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:21 Heat of formation + Delta-G solvation = -149.381051 kcal Electronic energy + Delta-G solvation = -28401.583296 eV Core-core repulsion = 24446.426071 eV Total energy + Delta-G solvation = -3955.157225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.64627 -38.45751 -36.74125 -36.22770 -36.22648 -34.96742 -33.46321 -32.29585 -32.05087 -28.19795 -26.90348 -25.52033 -25.15537 -23.88298 -21.21875 -21.11792 -20.17608 -19.38459 -18.34724 -18.11232 -17.17715 -16.44543 -16.36926 -16.18086 -15.55960 -15.06197 -14.78087 -14.61331 -14.33241 -14.09596 -13.80444 -13.54870 -13.40298 -13.10676 -12.77620 -12.33151 -12.21314 -12.18152 -11.82356 -11.65956 -11.57368 -11.38986 -11.18840 -11.14553 -11.02497 -10.92921 -10.85651 -10.75003 -10.67091 -10.54137 -10.46106 -10.34563 -10.11101 -9.71641 -9.02178 -8.80600 -8.53929 -8.11319 -6.16421 -4.31304 1.08582 2.06011 2.88039 3.34478 3.36708 3.41239 3.44608 4.39726 4.40879 4.55125 4.63510 4.75152 4.79406 4.97983 5.02061 5.13232 5.13729 5.20954 5.26287 5.36838 5.45924 5.57231 5.62258 5.66835 5.77301 5.80508 5.86186 5.92041 5.97923 5.98161 6.22404 6.23039 6.31162 6.35284 6.38585 6.60120 6.67913 6.78140 6.95008 7.17007 7.38004 7.77548 7.78060 8.17629 8.77152 9.45985 10.91093 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.004953 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.405925 B = 5652.237655 C = 6627.694670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.080 0.920 4 C -0.094 4.094 5 C -0.100 4.100 6 H 0.117 0.883 7 C 0.489 3.511 8 O -0.518 6.518 9 O -0.509 6.509 10 C 0.134 3.866 11 N -1.013 6.013 12 S 2.621 3.379 13 O -0.969 6.969 14 O -0.936 6.936 15 C -0.559 4.559 16 C 0.051 3.949 17 C -0.544 4.544 18 H 0.068 0.932 19 C 0.099 3.901 20 N -0.866 5.866 21 Si 0.890 3.110 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.204 4.204 26 C -0.144 4.144 27 C 0.122 3.878 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.409 0.591 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.266 0.734 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 -2.896 -9.120 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 H 0.098 0.902 4 C -0.132 4.132 5 C -0.121 4.121 6 H 0.135 0.865 7 C 0.331 3.669 8 O -0.407 6.407 9 O -0.320 6.320 10 C 0.007 3.993 11 N -0.847 5.847 12 S 2.719 3.281 13 O -0.960 6.960 14 O -0.926 6.926 15 C -0.691 4.691 16 C 0.049 3.951 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.109 4.109 20 N -0.500 5.500 21 Si 0.716 3.284 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.241 4.241 26 C -0.183 4.183 27 C -0.003 4.003 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.268 0.732 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.083 -3.312 -8.346 14.264 hybrid contribution 0.919 -0.049 -0.842 1.247 sum -10.164 -3.360 -9.188 14.108 Atomic orbital electron populations 1.21755 0.94049 1.02258 1.02192 1.21573 0.96226 1.00360 0.94809 0.90207 1.21452 0.91222 1.02249 0.98250 1.21547 0.97989 1.01999 0.90589 0.86510 1.23354 0.79978 0.76176 0.87385 1.90701 1.56957 1.45502 1.47500 1.84618 1.26051 1.73736 1.47561 1.21189 0.99513 0.96557 0.82011 1.58486 1.15894 1.76136 1.34169 1.04881 0.72786 0.77787 0.72622 1.93471 1.68484 1.87317 1.46737 1.93536 1.46786 1.67377 1.84915 1.30021 1.06724 1.22337 1.10061 1.18171 0.95471 0.89800 0.91701 1.20547 0.94516 1.29952 1.13150 0.91375 1.24881 0.98293 0.93266 0.94453 1.69937 1.23306 1.41333 1.15447 0.86664 0.80698 0.81148 0.79878 1.19145 1.20966 1.19941 1.23121 0.95169 1.08572 0.97284 1.22526 0.98622 0.98447 0.98699 1.21512 0.79464 1.01240 0.98111 0.92323 0.92018 0.92305 0.90778 0.90729 0.73204 0.90967 0.87349 0.85472 0.88676 0.92463 0.91287 0.89712 0.89656 0.91652 0.88861 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.11 -1.09 2.87 -90.50 -0.26 -1.35 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.09 -0.97 3.74 -26.69 -0.10 -1.07 16 5 C -0.10 -1.16 2.78 -91.65 -0.25 -1.42 16 6 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 7 C 0.49 5.81 7.63 36.01 0.27 6.08 16 8 O -0.52 -7.16 16.74 -18.75 -0.31 -7.48 16 9 O -0.51 -5.30 13.35 -39.24 -0.52 -5.83 16 10 C 0.13 1.83 5.52 -3.71 -0.02 1.81 16 11 N -1.01 -15.39 3.23 -113.31 -0.37 -15.76 16 12 S 2.62 53.80 4.59 -107.50 -0.49 53.31 16 13 O -0.97 -21.76 16.75 -57.54 -0.96 -22.73 16 14 O -0.94 -22.60 15.85 -57.54 -0.91 -23.51 16 15 C -0.56 -11.33 6.29 37.16 0.23 -11.09 16 16 C 0.05 1.21 1.64 -155.66 -0.26 0.95 16 17 C -0.54 -14.72 6.89 -34.44 -0.24 -14.96 16 18 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 19 C 0.10 2.68 5.39 -17.82 -0.10 2.58 16 20 N -0.87 -23.59 12.96 55.43 0.72 -22.87 16 21 Si 0.89 21.58 29.55 -169.99 -5.02 16.55 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.20 -4.34 9.88 -26.74 -0.26 -4.61 16 26 C -0.14 -3.22 9.50 -26.74 -0.25 -3.47 16 27 C 0.12 1.51 5.61 -3.56 -0.02 1.49 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.41 2.39 9.10 45.56 0.41 2.81 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.11 1.64 7.09 -51.93 -0.37 1.27 16 36 H 0.13 2.60 8.14 -51.93 -0.42 2.17 16 37 H 0.09 1.58 7.95 -51.92 -0.41 1.17 16 38 H 0.27 6.93 8.32 -40.82 -0.34 6.59 16 39 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.19 7.12 -51.93 -0.37 0.82 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -33.91 372.51 -9.37 -43.28 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.19 Total: 5.30 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -0.91 Total: -25.87 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.35 Total: -38.63 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -2.71 Total: -59.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 53.80 SS G_CDS: -0.49 Total: 53.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.91 -9.37 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263179149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.106 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds