Wall clock time and date at job start Tue Mar 31 2020 17:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.50321 * 2 1 4 4 C 1.53046 * 109.50054 * 120.09956 * 2 1 3 5 5 C 1.53047 * 109.53439 * 58.58428 * 4 2 1 6 6 H 1.08997 * 109.49573 * 301.41340 * 5 4 2 7 7 C 1.50700 * 109.49445 * 181.35281 * 5 4 2 8 8 O 1.20821 * 120.00130 * 359.97438 * 7 5 4 9 9 O 1.34225 * 120.00058 * 180.02562 * 7 5 4 10 10 C 1.52755 * 109.38288 * 61.24188 * 5 4 2 11 11 N 1.46925 * 109.01063 * 305.58575 * 10 5 4 12 12 S 1.65599 * 120.63198 * 233.58320 * 11 10 5 13 13 O 1.42104 * 104.27748 * 25.79360 * 12 11 10 14 14 O 1.42098 * 104.27807 * 153.64884 * 12 11 10 15 15 C 1.81398 * 104.45142 * 269.72219 * 12 11 10 16 16 C 1.53000 * 109.47018 * 173.93231 * 15 12 11 17 17 C 1.50702 * 115.54805 * 39.91701 * 16 15 12 18 18 H 1.08002 * 120.00099 * 264.78012 * 17 16 15 19 19 C 1.37873 * 120.00180 * 84.78438 * 17 16 15 20 20 N 1.31510 * 120.00161 * 353.00381 * 19 17 16 21 21 Si 1.86810 * 119.99854 * 172.99855 * 19 17 16 22 22 H 1.48498 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46607 * 120.00238 * 21 19 17 24 24 H 1.48495 * 109.46921 * 239.99865 * 21 19 17 25 25 C 1.52993 * 117.50107 * 254.20599 * 16 15 12 26 26 C 1.52998 * 117.49742 * 185.58133 * 16 15 12 27 27 C 1.46930 * 118.73773 * 53.30891 * 11 10 5 28 28 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47191 * 300.06328 * 1 2 3 30 30 H 1.08998 * 109.47541 * 60.06231 * 1 2 3 31 31 H 1.08995 * 109.46214 * 178.60414 * 4 2 1 32 32 H 1.08999 * 109.45542 * 298.58101 * 4 2 1 33 33 H 0.96701 * 117.00356 * 179.97438 * 9 7 5 34 34 H 1.09000 * 109.51180 * 185.70232 * 10 5 4 35 35 H 1.09003 * 109.43326 * 65.42450 * 10 5 4 36 36 H 1.09001 * 109.46867 * 293.93069 * 15 12 11 37 37 H 1.08997 * 109.47128 * 53.93290 * 15 12 11 38 38 H 0.97000 * 120.00121 * 185.02235 * 20 19 17 39 39 H 1.08997 * 117.49891 * 359.97438 * 25 16 15 40 40 H 1.09002 * 117.50155 * 145.02432 * 25 16 15 41 41 H 1.09007 * 117.49989 * 214.98182 * 26 16 15 42 42 H 1.09002 * 117.50246 * 359.97438 * 26 16 15 43 43 H 1.09003 * 109.58134 * 66.43366 * 27 11 10 44 44 H 1.09000 * 109.58688 * 186.71103 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 1.5030 -2.1562 1.2653 6 1 0.4132 -2.1359 1.2534 7 6 1.9794 -2.8574 2.5113 8 8 2.6779 -2.2719 3.3043 9 8 1.6285 -4.1327 2.7395 10 6 2.0090 -2.9025 0.0323 11 7 1.6514 -2.1378 -1.1703 12 16 0.8189 -2.8545 -2.4094 13 8 0.1064 -3.9143 -1.7861 14 8 0.1327 -1.7806 -3.0379 15 6 2.1097 -3.5113 -3.5017 16 6 1.4632 -4.3347 -4.6175 17 6 0.1902 -3.7668 -5.1902 18 1 -0.7663 -4.0996 -4.8151 19 6 0.2467 -2.8225 -6.1932 20 7 1.4051 -2.3161 -6.5552 21 14 -1.3225 -2.2625 -7.0382 22 1 -2.4835 -2.9786 -6.4512 23 1 -1.4940 -0.8002 -6.8447 24 1 -1.2373 -2.5631 -8.4899 25 6 1.5818 -5.8576 -4.5310 26 6 2.3943 -5.0849 -5.5720 27 6 2.0412 -0.7234 -1.2498 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8894 30 1 -0.3634 0.5128 -0.8905 31 1 3.1305 -0.7448 1.2350 32 1 1.6985 -0.1966 2.1388 33 1 1.9586 -4.5402 3.5520 34 1 1.5472 -3.8889 -0.0113 35 1 3.0925 -3.0064 0.0905 36 1 2.6711 -2.6853 -3.9383 37 1 2.7844 -4.1453 -2.9265 38 1 1.4385 -1.6001 -7.2087 39 1 2.1207 -6.2729 -3.6795 40 1 0.7389 -6.4492 -4.8884 41 1 2.0860 -5.1681 -6.6142 42 1 3.4675 -4.9915 -5.4054 43 1 3.1274 -0.6460 -1.2983 44 1 1.6027 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263179152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:25 Heat of formation + Delta-G solvation = -145.257482 kcal Electronic energy + Delta-G solvation = -28446.104735 eV Core-core repulsion = 24491.126321 eV Total energy + Delta-G solvation = -3954.978414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74036 -38.62275 -36.73832 -36.28501 -36.22849 -34.94340 -33.08605 -32.19159 -32.05539 -28.18600 -26.97930 -25.52803 -25.13326 -24.13137 -21.56695 -21.21556 -19.64725 -19.20318 -18.36380 -18.05573 -17.29923 -16.61098 -16.40645 -16.15363 -15.31613 -15.05545 -14.67945 -14.45754 -14.23552 -14.07971 -13.91852 -13.64965 -13.59650 -13.09386 -13.05123 -12.27412 -12.18957 -11.86452 -11.82097 -11.69495 -11.54545 -11.28938 -11.14466 -11.05371 -11.01104 -10.95302 -10.89294 -10.75400 -10.54229 -10.51876 -10.37951 -10.29471 -10.12014 -9.71045 -9.00613 -8.78474 -8.55834 -8.11431 -6.17644 -4.32223 1.08473 2.02098 2.84834 3.29860 3.38629 3.42267 3.43985 4.38395 4.41980 4.58903 4.64439 4.79819 4.87824 4.99581 5.08291 5.12793 5.15236 5.23206 5.27777 5.33838 5.57951 5.65432 5.70896 5.73319 5.79548 5.82580 5.96212 6.02189 6.04382 6.09415 6.26291 6.30495 6.31977 6.37570 6.41663 6.60541 6.68275 6.82120 6.95352 7.16901 7.37881 7.72296 7.77284 8.17121 8.76930 9.45072 10.90031 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.004385 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.143345 B = 6384.580251 C = 7180.407411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.095 4.095 5 C -0.097 4.097 6 H 0.119 0.881 7 C 0.488 3.512 8 O -0.517 6.517 9 O -0.511 6.511 10 C 0.130 3.870 11 N -1.011 6.011 12 S 2.621 3.379 13 O -0.970 6.970 14 O -0.934 6.934 15 C -0.559 4.559 16 C 0.049 3.951 17 C -0.542 4.542 18 H 0.069 0.931 19 C 0.098 3.902 20 N -0.867 5.867 21 Si 0.892 3.108 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.283 1.283 25 C -0.204 4.204 26 C -0.144 4.144 27 C 0.117 3.883 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.408 0.592 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 1.917 14.435 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.133 4.133 5 C -0.118 4.118 6 H 0.137 0.863 7 C 0.330 3.670 8 O -0.405 6.405 9 O -0.322 6.322 10 C 0.003 3.997 11 N -0.846 5.846 12 S 2.719 3.281 13 O -0.961 6.961 14 O -0.925 6.925 15 C -0.692 4.692 16 C 0.047 3.953 17 C -0.579 4.579 18 H 0.087 0.913 19 C -0.109 4.109 20 N -0.501 5.501 21 Si 0.719 3.281 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.209 1.209 25 C -0.241 4.241 26 C -0.183 4.183 27 C -0.008 4.008 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.351 2.342 14.056 14.639 hybrid contribution 0.327 -0.010 -0.038 0.330 sum 3.679 2.331 14.019 14.679 Atomic orbital electron populations 1.21917 0.94621 1.02431 1.02113 1.21445 0.96865 0.99413 0.94318 0.89484 1.21436 1.01269 0.92052 0.98492 1.21427 1.04154 0.96029 0.90145 0.86333 1.23443 0.76475 0.79591 0.87502 1.90703 1.35747 1.66481 1.47579 1.84608 1.71974 1.28049 1.47580 1.21110 1.00244 0.95470 0.82839 1.58330 1.76228 1.18837 1.31196 1.04839 0.75997 0.74260 0.72966 1.93471 1.69601 1.58020 1.74992 1.93524 1.69608 1.53765 1.75559 1.30014 1.15916 1.11039 1.12187 1.18200 0.96338 0.87134 0.93647 1.20625 0.90455 1.25403 1.21450 0.91259 1.24891 0.96245 0.94752 0.95057 1.69958 1.24345 1.24319 1.31462 0.86521 0.83648 0.79131 0.78835 1.19208 1.20279 1.20850 1.23127 1.03009 0.96644 1.01368 1.22530 0.94995 1.04718 0.96077 1.21518 0.99722 0.80208 0.99362 0.92429 0.92775 0.91510 0.90774 0.90858 0.73294 0.87549 0.91344 0.85464 0.88696 0.92583 0.91258 0.89665 0.89637 0.91638 0.91573 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.70 37.15 0.32 -1.54 16 2 C -0.10 -1.10 3.21 -90.50 -0.29 -1.39 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.09 -1.00 4.01 -26.68 -0.11 -1.11 16 5 C -0.10 -1.12 2.42 -91.87 -0.22 -1.34 16 6 H 0.12 1.39 6.33 -51.93 -0.33 1.06 16 7 C 0.49 5.50 7.63 36.01 0.27 5.77 16 8 O -0.52 -6.89 16.74 -18.75 -0.31 -7.21 16 9 O -0.51 -4.76 13.35 -39.24 -0.52 -5.28 16 10 C 0.13 1.66 5.62 -3.94 -0.02 1.64 16 11 N -1.01 -15.15 2.67 -113.76 -0.30 -15.45 16 12 S 2.62 53.17 4.63 -107.50 -0.50 52.68 16 13 O -0.97 -21.50 16.58 -57.54 -0.95 -22.45 16 14 O -0.93 -21.91 15.72 -57.54 -0.90 -22.81 16 15 C -0.56 -11.51 6.29 37.16 0.23 -11.28 16 16 C 0.05 1.18 1.64 -155.66 -0.26 0.92 16 17 C -0.54 -14.66 6.89 -34.44 -0.24 -14.89 16 18 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 19 C 0.10 2.65 5.39 -17.82 -0.10 2.56 16 20 N -0.87 -23.61 12.96 55.43 0.72 -22.89 16 21 Si 0.89 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.20 -4.38 9.88 -26.73 -0.26 -4.65 16 26 C -0.14 -3.25 9.50 -26.73 -0.25 -3.50 16 27 C 0.12 1.52 5.83 -3.71 -0.02 1.50 16 28 H 0.06 0.78 5.97 -51.93 -0.31 0.47 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 32 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.41 1.91 9.10 45.56 0.41 2.32 16 34 H 0.11 1.44 6.85 -51.93 -0.36 1.09 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.13 2.65 8.14 -51.92 -0.42 2.23 16 37 H 0.09 1.63 7.95 -51.93 -0.41 1.22 16 38 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 39 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 1.48 6.86 -51.93 -0.36 1.13 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -33.47 367.27 -9.17 -42.64 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.96 Total: 6.03 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -0.94 Total: -27.32 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.41 Total: -38.34 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -2.70 Total: -57.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.50 Total: 52.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.47 -9.17 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263179152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.620 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds