Wall clock time and date at job start Tue Mar 31 2020 17:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.50321 * 2 1 4 4 C 1.53046 * 109.50054 * 120.09956 * 2 1 3 5 5 C 1.53047 * 109.53439 * 58.58428 * 4 2 1 6 6 H 1.08997 * 109.49573 * 301.41340 * 5 4 2 7 7 C 1.50700 * 109.49445 * 181.35281 * 5 4 2 8 8 O 1.20821 * 120.00130 * 359.97438 * 7 5 4 9 9 O 1.34225 * 120.00058 * 180.02562 * 7 5 4 10 10 C 1.52755 * 109.38288 * 61.24188 * 5 4 2 11 11 N 1.46925 * 109.01063 * 305.58575 * 10 5 4 12 12 S 1.65599 * 120.63198 * 233.58320 * 11 10 5 13 13 O 1.42104 * 104.27748 * 25.79360 * 12 11 10 14 14 O 1.42098 * 104.27807 * 153.64884 * 12 11 10 15 15 C 1.81398 * 104.45142 * 269.72219 * 12 11 10 16 16 C 1.53000 * 109.47018 * 173.93231 * 15 12 11 17 17 C 1.50702 * 115.54805 * 39.91701 * 16 15 12 18 18 H 1.08002 * 120.00099 * 264.78012 * 17 16 15 19 19 C 1.37873 * 120.00180 * 84.78438 * 17 16 15 20 20 N 1.31510 * 120.00161 * 353.00381 * 19 17 16 21 21 Si 1.86810 * 119.99854 * 172.99855 * 19 17 16 22 22 H 1.48498 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46607 * 120.00238 * 21 19 17 24 24 H 1.48495 * 109.46921 * 239.99865 * 21 19 17 25 25 C 1.52993 * 117.50107 * 254.20599 * 16 15 12 26 26 C 1.52998 * 117.49742 * 185.58133 * 16 15 12 27 27 C 1.46930 * 118.73773 * 53.30891 * 11 10 5 28 28 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47191 * 300.06328 * 1 2 3 30 30 H 1.08998 * 109.47541 * 60.06231 * 1 2 3 31 31 H 1.08995 * 109.46214 * 178.60414 * 4 2 1 32 32 H 1.08999 * 109.45542 * 298.58101 * 4 2 1 33 33 H 0.96701 * 117.00356 * 179.97438 * 9 7 5 34 34 H 1.09000 * 109.51180 * 185.70232 * 10 5 4 35 35 H 1.09003 * 109.43326 * 65.42450 * 10 5 4 36 36 H 1.09001 * 109.46867 * 293.93069 * 15 12 11 37 37 H 1.08997 * 109.47128 * 53.93290 * 15 12 11 38 38 H 0.97000 * 120.00121 * 185.02235 * 20 19 17 39 39 H 1.08997 * 117.49891 * 359.97438 * 25 16 15 40 40 H 1.09002 * 117.50155 * 145.02432 * 25 16 15 41 41 H 1.09007 * 117.49989 * 214.98182 * 26 16 15 42 42 H 1.09002 * 117.50246 * 359.97438 * 26 16 15 43 43 H 1.09003 * 109.58134 * 66.43366 * 27 11 10 44 44 H 1.09000 * 109.58688 * 186.71103 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 1.5030 -2.1562 1.2653 6 1 0.4132 -2.1359 1.2534 7 6 1.9794 -2.8574 2.5113 8 8 2.6779 -2.2719 3.3043 9 8 1.6285 -4.1327 2.7395 10 6 2.0090 -2.9025 0.0323 11 7 1.6514 -2.1378 -1.1703 12 16 0.8189 -2.8545 -2.4094 13 8 0.1064 -3.9143 -1.7861 14 8 0.1327 -1.7806 -3.0379 15 6 2.1097 -3.5113 -3.5017 16 6 1.4632 -4.3347 -4.6175 17 6 0.1902 -3.7668 -5.1902 18 1 -0.7663 -4.0996 -4.8151 19 6 0.2467 -2.8225 -6.1932 20 7 1.4051 -2.3161 -6.5552 21 14 -1.3225 -2.2625 -7.0382 22 1 -2.4835 -2.9786 -6.4512 23 1 -1.4940 -0.8002 -6.8447 24 1 -1.2373 -2.5631 -8.4899 25 6 1.5818 -5.8576 -4.5310 26 6 2.3943 -5.0849 -5.5720 27 6 2.0412 -0.7234 -1.2498 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8894 30 1 -0.3634 0.5128 -0.8905 31 1 3.1305 -0.7448 1.2350 32 1 1.6985 -0.1966 2.1388 33 1 1.9586 -4.5402 3.5520 34 1 1.5472 -3.8889 -0.0113 35 1 3.0925 -3.0064 0.0905 36 1 2.6711 -2.6853 -3.9383 37 1 2.7844 -4.1453 -2.9265 38 1 1.4385 -1.6001 -7.2087 39 1 2.1207 -6.2729 -3.6795 40 1 0.7389 -6.4492 -4.8884 41 1 2.0860 -5.1681 -6.6142 42 1 3.4675 -4.9915 -5.4054 43 1 3.1274 -0.6460 -1.2983 44 1 1.6027 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263179152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:24 Heat of formation + Delta-G solvation = -168.302935 kcal Electronic energy + Delta-G solvation = -28447.104060 eV Core-core repulsion = 24491.126321 eV Total energy + Delta-G solvation = -3955.977740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61814 -39.57962 -38.52178 -37.89880 -37.11371 -36.62689 -34.17492 -34.06131 -33.14642 -29.84463 -27.94399 -27.51623 -26.07211 -25.19591 -22.95654 -22.45726 -21.38798 -20.39119 -19.48009 -19.02912 -18.66070 -18.28310 -17.50630 -17.27114 -16.91827 -16.49548 -16.48481 -15.64144 -15.44336 -15.28710 -15.14484 -14.96679 -14.69402 -14.54251 -13.98921 -13.90690 -13.71751 -13.21030 -13.12703 -13.05312 -12.89971 -12.84016 -12.77222 -12.54692 -12.43596 -12.38620 -12.22912 -12.07216 -11.88235 -11.86926 -11.72967 -11.56760 -11.49987 -11.25839 -10.85827 -10.51622 -10.10240 -9.76112 -8.22479 -6.39721 -0.46295 1.15013 1.35138 1.40176 1.48657 1.95070 2.20082 2.39731 3.07469 3.13731 3.32396 3.46875 3.58054 3.68640 3.82684 3.99235 3.99891 4.19401 4.24498 4.32205 4.38091 4.47879 4.60157 4.61627 4.66830 4.73154 4.79814 4.86701 4.89267 4.95624 4.97804 4.99035 5.15205 5.19923 5.22673 5.30377 5.40221 5.43170 5.61270 5.61747 5.69479 5.71583 6.21594 6.69603 7.01043 7.38081 8.84806 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.004385 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.143345 B = 6384.580251 C = 7180.407411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 H 0.114 0.886 4 C -0.088 4.088 5 C -0.099 4.099 6 H 0.113 0.887 7 C 0.498 3.502 8 O -0.537 6.537 9 O -0.511 6.511 10 C 0.123 3.877 11 N -1.002 6.002 12 S 2.631 3.369 13 O -0.997 6.997 14 O -0.977 6.977 15 C -0.556 4.556 16 C 0.012 3.988 17 C -0.555 4.555 18 H 0.047 0.953 19 C 0.061 3.939 20 N -0.883 5.883 21 Si 0.926 3.074 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.190 4.190 26 C -0.142 4.142 27 C 0.108 3.892 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.429 0.571 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 1.969 16.105 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.114 4.114 3 H 0.132 0.868 4 C -0.126 4.126 5 C -0.120 4.120 6 H 0.130 0.870 7 C 0.341 3.659 8 O -0.427 6.427 9 O -0.325 6.325 10 C -0.002 4.002 11 N -0.839 5.839 12 S 2.730 3.270 13 O -0.987 6.987 14 O -0.967 6.967 15 C -0.689 4.689 16 C 0.010 3.990 17 C -0.592 4.592 18 H 0.065 0.935 19 C -0.144 4.144 20 N -0.518 5.518 21 Si 0.751 3.249 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.227 4.227 26 C -0.181 4.181 27 C -0.017 4.017 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.291 0.709 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.935 2.363 15.721 16.646 hybrid contribution -0.181 -0.080 -0.478 0.517 sum 4.753 2.283 15.243 16.129 Atomic orbital electron populations 1.21947 0.95915 1.01186 1.02361 1.21457 0.95718 1.00672 0.93554 0.86826 1.21406 1.01737 0.91183 0.98271 1.21415 1.03932 0.96770 0.89868 0.86963 1.23203 0.75846 0.79891 0.86959 1.90703 1.36747 1.67061 1.48220 1.84567 1.71761 1.27196 1.48988 1.21339 1.01919 0.94843 0.82112 1.57832 1.75893 1.19682 1.30517 1.04177 0.76135 0.73450 0.73255 1.93425 1.70848 1.58994 1.75441 1.93466 1.71308 1.54924 1.76973 1.29914 1.16260 1.11100 1.11592 1.18362 0.96060 0.89038 0.95508 1.20738 0.91104 1.25628 1.21770 0.93522 1.25392 0.98229 0.95091 0.95662 1.69984 1.25092 1.24759 1.31997 0.85997 0.81354 0.78645 0.78885 1.19671 1.20259 1.19318 1.23209 1.02677 0.95052 1.01793 1.22469 0.95966 1.04693 0.94981 1.21790 1.01419 0.78832 0.99630 0.94446 0.90644 0.93157 0.89791 0.90059 0.70890 0.88507 0.88507 0.85971 0.85019 0.92393 0.88031 0.90192 0.91805 0.89560 0.88629 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.70 71.98 0.63 -3.08 16 2 C -0.09 -1.86 3.21 -10.72 -0.03 -1.90 16 3 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.09 -1.61 4.01 30.63 0.12 -1.49 16 5 C -0.10 -2.08 2.42 -11.61 -0.03 -2.11 16 6 H 0.11 2.51 6.33 -2.39 -0.02 2.50 16 7 C 0.50 10.01 7.63 71.24 0.54 10.56 16 8 O -0.54 -12.93 16.74 21.98 0.37 -12.56 16 9 O -0.51 -8.29 13.35 -51.37 -0.69 -8.98 16 10 C 0.12 2.88 5.62 86.22 0.48 3.37 16 11 N -1.00 -28.74 2.67 -513.84 -1.37 -30.11 16 12 S 2.63 106.93 4.63 -56.49 -0.26 106.67 16 13 O -1.00 -44.47 16.58 -127.65 -2.12 -46.59 16 14 O -0.98 -47.20 15.72 -127.65 -2.01 -49.21 16 15 C -0.56 -22.29 6.29 71.98 0.45 -21.84 16 16 C 0.01 0.59 1.64 -52.93 -0.09 0.50 16 17 C -0.55 -30.59 6.89 25.60 0.18 -30.41 16 18 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 19 C 0.06 3.38 5.39 84.65 0.46 3.83 16 20 N -0.88 -48.54 12.96 21.45 0.28 -48.26 16 21 Si 0.93 44.58 29.55 68.60 2.03 46.61 16 22 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C -0.19 -7.88 9.88 30.59 0.30 -7.58 16 26 C -0.14 -6.27 9.50 30.59 0.29 -5.98 16 27 C 0.11 2.63 5.83 86.36 0.50 3.13 16 28 H 0.04 1.02 5.97 -2.39 -0.01 1.00 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 33 H 0.43 2.88 9.10 -74.06 -0.67 2.21 16 34 H 0.10 2.47 6.85 -2.39 -0.02 2.45 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 5.00 8.14 -2.39 -0.02 4.98 16 37 H 0.13 4.15 7.95 -2.39 -0.02 4.13 16 38 H 0.27 13.93 8.32 -92.71 -0.77 13.16 16 39 H 0.10 3.51 8.08 -2.39 -0.02 3.50 16 40 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 42 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.35 6.86 -2.39 -0.02 2.33 16 Total: -1.00 -72.97 367.27 0.38 -72.59 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.34 Total: 22.85 kcal Atomic # 6 Polarization: -56.81 SS G_CDS: 3.81 Total: -53.01 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.09 Total: -78.38 kcal Atomic # 8 Polarization: -112.89 SS G_CDS: -4.44 Total: -117.33 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 106.93 SS G_CDS: -0.26 Total: 106.67 kcal Total: -72.97 0.38 -72.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263179152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.716 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds