Wall clock time and date at job start Tue Mar 31 2020 17:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 O 1.42898 * 109.46810 * 179.97438 * 16 14 12 18 18 C 1.35748 * 116.99819 * 179.97438 * 17 16 14 19 19 C 1.39372 * 119.72480 * 359.73395 * 18 17 16 20 20 C 1.36464 * 120.42546 * 179.71720 * 19 18 17 21 21 C 1.39972 * 119.79402 * 0.55035 * 20 19 18 22 22 C 1.46435 * 120.98258 * 179.72439 * 21 20 19 23 23 C 1.35848 * 118.19428 * 179.97438 * 22 21 20 24 24 C 1.41004 * 119.82300 * 359.97438 * 23 22 21 25 25 O 1.21790 * 119.15647 * 179.97438 * 24 23 22 26 26 O 1.34223 * 121.68680 * 0.02614 * 24 23 22 27 27 C 1.35025 * 121.46739 * 359.97438 * 26 24 23 28 28 C 1.38518 * 119.72879 * 180.02562 * 18 17 16 29 29 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 30 30 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 31 31 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 32 32 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 33 33 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 34 34 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 35 35 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 36 36 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 37 37 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 38 38 H 1.07999 * 119.78777 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.10496 * 180.29946 * 20 19 18 40 40 H 1.08000 * 120.90233 * 359.96147 * 22 21 20 41 41 H 1.07999 * 120.09058 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.10237 * 0.02704 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 8 4.0894 0.1522 4.0916 18 6 4.6211 -0.3337 5.2422 19 6 4.3736 -1.6538 5.6144 20 6 4.9056 -2.1587 6.7652 21 6 5.6956 -1.3423 7.5829 22 6 6.2744 -1.8554 8.8263 23 6 7.0325 -1.0140 9.5765 24 6 7.2417 0.3126 9.1470 25 8 7.9230 1.0567 9.8292 26 8 6.7082 0.7768 8.0062 27 6 5.9452 -0.0072 7.2147 28 6 5.4001 0.4884 6.0397 29 1 -0.3634 0.5908 -0.8408 30 1 -0.3634 -1.0236 -0.0913 31 1 -0.3634 0.4327 0.9321 32 1 2.6357 -1.6779 -3.4731 33 1 2.4157 -2.7377 0.9716 34 1 1.6238 -2.2852 2.5001 35 1 0.6905 -2.3002 0.9847 36 1 2.4471 -1.0880 3.9073 37 1 3.9004 -1.6025 3.0178 38 1 3.7602 -2.2824 4.9860 39 1 4.7144 -3.1838 7.0462 40 1 6.1030 -2.8750 9.1386 41 1 7.4739 -1.3603 10.4993 42 1 5.5831 1.5118 5.7470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264124187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:23 Heat of formation + Delta-G solvation = -86.361336 kcal Electronic energy + Delta-G solvation = -27120.402798 eV Core-core repulsion = 23032.534361 eV Total energy + Delta-G solvation = -4087.868437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22187 -40.55230 -39.26138 -38.27219 -37.03011 -35.65875 -34.58844 -33.03018 -31.56203 -30.76791 -29.75058 -28.07192 -26.48779 -24.87835 -24.71128 -24.45487 -23.35510 -21.49308 -19.94291 -18.81661 -18.55042 -17.84395 -17.71489 -17.39650 -17.10147 -16.54232 -16.37635 -15.91235 -15.73210 -15.09923 -14.73835 -14.54861 -14.35329 -14.20773 -13.81967 -13.62545 -13.32051 -12.91032 -12.90554 -12.81465 -12.46227 -12.39228 -12.26980 -11.83602 -11.77594 -11.69497 -11.57094 -11.38882 -10.66520 -10.63275 -10.46181 -10.14328 -9.80246 -9.34698 -9.27344 -8.99771 -8.59061 -8.46372 -8.01219 -6.55701 -4.25807 -0.15066 0.59828 1.16143 1.85716 2.45242 2.64705 2.92652 3.26947 3.29222 3.42499 3.53964 3.68820 3.80053 3.94256 3.99201 4.25931 4.37425 4.42692 4.61441 4.68824 4.75635 4.89511 4.93706 5.17371 5.18872 5.25594 5.31297 5.35085 5.58290 5.67871 5.73191 5.73808 5.86451 5.99761 6.16008 6.23304 6.39014 6.75431 6.79504 6.83101 7.01079 7.13617 7.20793 7.67803 8.04556 8.22426 8.54640 8.76511 9.44792 10.82330 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.002157 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.904897 B =12978.182053 C =13446.364507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.605 4.605 5 H 0.061 0.939 6 C 0.033 3.967 7 N -0.906 5.906 8 Si 1.048 2.952 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.582 5.582 13 C 0.083 3.917 14 C 0.506 3.494 15 O -0.527 6.527 16 C 0.039 3.961 17 O -0.275 6.275 18 C 0.198 3.802 19 C -0.230 4.230 20 C -0.009 4.009 21 C -0.208 4.208 22 C 0.017 3.983 23 C -0.265 4.265 24 C 0.510 3.490 25 O -0.468 6.468 26 O -0.269 6.269 27 C 0.190 3.810 28 C -0.176 4.176 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.268 0.732 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -8.448 23.395 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.128 3.872 3 H 0.082 0.918 4 C -0.643 4.643 5 H 0.080 0.920 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.877 3.123 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.315 5.315 13 C -0.061 4.061 14 C 0.291 3.709 15 O -0.403 6.403 16 C -0.039 4.039 17 O -0.185 6.185 18 C 0.150 3.850 19 C -0.248 4.248 20 C -0.027 4.027 21 C -0.209 4.209 22 C -0.002 4.002 23 C -0.284 4.284 24 C 0.360 3.640 25 O -0.356 6.356 26 O -0.181 6.181 27 C 0.145 3.855 28 C -0.195 4.195 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.317 -5.990 22.332 23.238 hybrid contribution 0.501 -1.815 1.104 2.183 sum 2.818 -7.806 23.436 24.862 Atomic orbital electron populations 1.22416 0.98724 1.01244 0.99383 1.19475 0.90301 0.95360 0.82077 0.91800 1.22215 1.40481 1.10693 0.90909 0.92038 1.25710 0.96396 1.03396 0.91720 1.70832 1.36187 1.16742 1.30178 0.83954 0.76229 0.75737 0.76353 1.20856 1.19961 1.21291 1.47904 1.48894 1.11859 1.22860 1.21658 1.02422 0.82748 0.99272 1.19718 0.80135 0.87322 0.83744 1.90722 1.56979 1.16590 1.76036 1.22821 0.95511 0.92935 0.92631 1.86199 1.62528 1.39188 1.30625 1.18861 0.89745 0.91197 0.85208 1.21141 1.07520 0.95326 1.00852 1.20658 0.91461 0.98982 0.91581 1.19019 1.08420 0.93931 0.99536 1.22788 0.88316 0.99558 0.89517 1.22487 1.07342 0.93623 1.04961 1.19245 0.78355 0.88651 0.77796 1.90988 1.35772 1.60253 1.48604 1.83561 1.56463 1.44887 1.33140 1.18515 0.89719 0.87833 0.89418 1.19502 1.03772 1.02598 0.93653 0.92612 0.92714 0.94910 0.92216 0.92671 0.92870 0.90279 0.88805 0.88685 0.83915 0.83857 0.82999 0.82040 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.65 37.16 0.32 -2.87 16 2 C 0.23 5.24 2.21 -69.09 -0.15 5.09 16 3 H 0.06 1.64 5.40 -51.93 -0.28 1.36 16 4 C -0.60 -15.94 8.77 -34.44 -0.30 -16.24 16 5 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 6 C 0.03 0.92 5.43 -17.82 -0.10 0.83 16 7 N -0.91 -26.79 13.70 55.43 0.76 -26.03 16 8 Si 1.05 24.85 25.28 -169.99 -4.30 20.56 16 9 H -0.28 -6.20 6.82 56.52 0.39 -5.81 16 10 H -0.27 -6.30 6.35 56.52 0.36 -5.94 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.58 -10.94 2.75 -175.27 -0.48 -11.42 16 13 C 0.08 1.14 9.43 59.85 0.56 1.70 16 14 C 0.51 9.35 7.75 -10.98 -0.09 9.26 16 15 O -0.53 -12.23 15.83 -14.35 -0.23 -12.46 16 16 C 0.04 0.48 3.76 36.01 0.14 0.62 16 17 O -0.28 -3.82 9.65 -38.86 -0.38 -4.20 16 18 C 0.20 2.15 6.69 -39.06 -0.26 1.89 16 19 C -0.23 -1.75 8.96 -39.80 -0.36 -2.11 16 20 C -0.01 -0.05 9.78 -39.57 -0.39 -0.44 16 21 C -0.21 -1.62 5.87 -105.01 -0.62 -2.23 16 22 C 0.02 0.09 10.12 -37.14 -0.38 -0.28 16 23 C -0.27 -2.00 9.93 -39.39 -0.39 -2.39 16 24 C 0.51 5.96 7.89 31.78 0.25 6.21 16 25 O -0.47 -6.97 17.91 -19.59 -0.35 -7.32 16 26 O -0.27 -3.28 9.82 -20.80 -0.20 -3.48 16 27 C 0.19 1.99 6.76 -38.48 -0.26 1.73 16 28 C -0.18 -1.96 9.94 -39.31 -0.39 -2.35 16 29 H 0.06 1.15 4.41 -51.93 -0.23 0.92 16 30 H 0.05 1.02 6.88 -51.93 -0.36 0.66 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.27 7.85 8.72 -40.82 -0.36 7.49 16 33 H 0.05 0.77 8.09 -51.93 -0.42 0.34 16 34 H 0.05 0.49 6.44 -51.93 -0.33 0.15 16 35 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 36 H 0.09 0.83 6.89 -51.93 -0.36 0.47 16 37 H 0.10 0.94 7.62 -51.93 -0.40 0.54 16 38 H 0.14 0.77 6.24 -52.49 -0.33 0.45 16 39 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 40 H 0.15 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -35.63 352.49 -7.04 -42.67 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.77 Total: -2.05 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.40 Total: -1.57 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.28 Total: -37.45 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.16 Total: -27.46 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.30 Total: 20.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.63 -7.04 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264124187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.694 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds