Wall clock time and date at job start Tue Mar 31 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 O 1.42904 * 109.46970 * 180.02562 * 16 14 12 18 18 C 1.35749 * 116.99990 * 180.02562 * 17 16 14 19 19 C 1.39377 * 119.72459 * 359.72819 * 18 17 16 20 20 C 1.36462 * 120.42083 * 179.71602 * 19 18 17 21 21 C 1.39968 * 119.79998 * 0.55650 * 20 19 18 22 22 C 1.46432 * 120.98202 * 179.72677 * 21 20 19 23 23 C 1.35853 * 118.19169 * 179.97438 * 22 21 20 24 24 C 1.41003 * 119.82142 * 359.97438 * 23 22 21 25 25 O 1.21790 * 119.15249 * 180.02562 * 24 23 22 26 26 O 1.34224 * 121.69189 * 0.02562 * 24 23 22 27 27 C 1.35029 * 121.46434 * 359.97438 * 26 24 23 28 28 C 1.38515 * 119.72914 * 179.97438 * 18 17 16 29 29 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 30 30 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 31 31 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 32 32 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 34 34 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 35 35 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 36 36 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 37 37 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 38 38 H 1.07997 * 119.78917 * 359.97438 * 19 18 17 39 39 H 1.08007 * 120.09638 * 180.29614 * 20 19 18 40 40 H 1.07993 * 120.90623 * 359.95211 * 22 21 20 41 41 H 1.08000 * 120.08816 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.10471 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 8 4.0904 0.1518 -4.0910 18 6 4.6229 -0.3344 -5.2411 19 6 4.3856 -1.6582 -5.6071 20 6 4.9091 -2.1600 -6.7630 21 6 5.6991 -1.3437 -7.5808 22 6 6.2786 -1.8572 -8.8237 23 6 7.0359 -1.0155 -9.5744 24 6 7.2425 0.3121 -9.1465 25 8 7.9230 1.0564 -9.8293 26 8 6.7083 0.7766 -8.0061 27 6 5.9461 -0.0077 -7.2141 28 6 5.4018 0.4876 -6.0388 29 1 -0.3633 0.4254 -0.9355 30 1 -0.3634 -1.0229 0.0993 31 1 -0.3634 0.5974 0.8361 32 1 2.9613 -0.1040 4.2479 33 1 0.7377 -2.1445 -1.9992 34 1 2.4630 -2.5819 -1.9862 35 1 1.5296 -2.5969 -0.4706 36 1 3.9019 -1.6023 -3.0164 37 1 2.4486 -1.0893 -3.9068 38 1 3.7801 -2.2896 -4.9738 39 1 4.7179 -3.1852 -7.0439 40 1 6.1090 -2.8773 -9.1348 41 1 7.4784 -1.3622 -10.4965 42 1 5.5847 1.5110 -5.7462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264124191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:27 Heat of formation + Delta-G solvation = -87.287496 kcal Electronic energy + Delta-G solvation = -27166.896851 eV Core-core repulsion = 23078.988253 eV Total energy + Delta-G solvation = -4087.908598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19566 -40.50849 -39.20920 -38.23837 -36.99778 -35.56986 -34.56066 -32.88581 -31.54117 -30.82608 -29.72451 -28.01747 -26.38694 -25.36037 -24.68828 -24.46097 -23.32456 -21.47335 -19.91561 -18.78106 -18.52663 -17.81400 -17.60118 -17.11342 -17.06625 -16.50031 -16.22094 -15.81776 -15.69369 -15.16007 -14.63456 -14.52355 -14.33666 -14.18374 -13.97389 -13.56836 -13.32163 -12.80800 -12.78734 -12.55708 -12.46231 -12.37455 -12.34745 -12.03359 -11.70184 -11.55387 -11.48109 -11.15593 -10.80402 -10.64235 -10.54989 -10.42521 -9.87290 -9.43773 -9.24401 -9.22455 -8.71000 -8.43172 -7.89262 -6.26616 -4.30244 -0.12441 0.62842 1.18941 1.88757 2.47840 2.68906 2.98578 3.26388 3.29837 3.33262 3.40351 3.72881 3.83839 3.96987 4.01944 4.29399 4.30634 4.46135 4.66178 4.72383 4.83768 4.92864 4.96489 5.14318 5.21464 5.28344 5.34349 5.45071 5.61137 5.71056 5.74676 5.76907 5.89717 6.11146 6.18635 6.28029 6.45564 6.79492 6.82846 6.85672 6.97747 7.15929 7.30939 7.49369 7.91864 8.33728 8.66008 8.73927 9.35086 10.84804 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.002280 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.161164 B =12278.248765 C =12861.650517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.224 3.776 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.286 1.286 12 N -0.583 5.583 13 C 0.077 3.923 14 C 0.506 3.494 15 O -0.531 6.531 16 C 0.039 3.961 17 O -0.275 6.275 18 C 0.199 3.801 19 C -0.229 4.229 20 C -0.009 4.009 21 C -0.209 4.209 22 C 0.017 3.983 23 C -0.266 4.266 24 C 0.510 3.490 25 O -0.469 6.469 26 O -0.269 6.269 27 C 0.190 3.810 28 C -0.177 4.177 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.268 0.732 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -8.845 -22.307 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.124 3.876 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.195 1.195 10 H -0.188 1.188 11 H -0.212 1.212 12 N -0.316 5.316 13 C -0.067 4.067 14 C 0.290 3.710 15 O -0.408 6.408 16 C -0.040 4.040 17 O -0.186 6.186 18 C 0.150 3.850 19 C -0.248 4.248 20 C -0.027 4.027 21 C -0.210 4.210 22 C -0.001 4.001 23 C -0.285 4.285 24 C 0.360 3.640 25 O -0.357 6.357 26 O -0.181 6.181 27 C 0.145 3.855 28 C -0.196 4.196 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.063 -7.448 -22.152 23.462 hybrid contribution -0.065 0.358 0.088 0.374 sum 1.998 -7.090 -22.064 23.261 Atomic orbital electron populations 1.22218 0.97987 1.01048 0.99279 1.19368 0.90934 0.94974 0.82328 0.91675 1.21078 1.45169 0.95668 0.94731 0.90264 1.24959 0.93528 0.98629 0.95245 1.69877 1.44228 1.36234 1.02154 0.86903 0.80041 0.85856 0.77144 1.19479 1.18759 1.21245 1.48335 1.48836 1.11792 1.22665 1.21728 0.98931 0.82887 1.03149 1.19775 0.80189 0.87320 0.83685 1.90714 1.57265 1.16741 1.76076 1.22855 0.95553 0.92965 0.92604 1.86205 1.62489 1.39241 1.30624 1.18870 0.89669 0.91185 0.85236 1.21148 1.07698 0.95235 1.00727 1.20658 0.91476 0.98996 0.91556 1.19014 1.08422 0.93918 0.99599 1.22787 0.88292 0.99559 0.89493 1.22483 1.07414 0.93607 1.04977 1.19244 0.78332 0.88664 0.77801 1.90987 1.35825 1.60294 1.48578 1.83562 1.56495 1.44869 1.33139 1.18517 0.89743 0.87826 0.89417 1.19498 1.03776 1.02640 0.93675 0.95426 0.93031 0.92415 0.92228 0.93357 0.92672 0.89374 0.88586 0.88843 0.83858 0.83859 0.83007 0.82062 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.09 37.16 0.34 -2.54 16 2 C 0.22 5.06 2.27 -69.08 -0.16 4.90 16 3 H 0.07 1.65 4.11 -51.93 -0.21 1.44 16 4 C -0.53 -13.72 8.72 -34.44 -0.30 -14.03 16 5 H 0.08 2.15 6.82 -52.49 -0.36 1.79 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 8 Si 0.87 21.53 26.91 -169.99 -4.57 16.96 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.26 -6.23 6.73 56.52 0.38 -5.84 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 N -0.58 -10.91 2.75 -175.26 -0.48 -11.39 16 13 C 0.08 1.03 9.40 59.85 0.56 1.60 16 14 C 0.51 9.42 7.75 -10.99 -0.09 9.34 16 15 O -0.53 -12.48 15.83 -14.35 -0.23 -12.71 16 16 C 0.04 0.48 3.76 36.00 0.14 0.62 16 17 O -0.28 -3.90 9.65 -38.87 -0.38 -4.28 16 18 C 0.20 2.20 6.69 -39.06 -0.26 1.94 16 19 C -0.23 -1.79 8.96 -39.80 -0.36 -2.15 16 20 C -0.01 -0.05 9.78 -39.57 -0.39 -0.44 16 21 C -0.21 -1.66 5.87 -105.01 -0.62 -2.27 16 22 C 0.02 0.10 10.12 -37.14 -0.38 -0.28 16 23 C -0.27 -2.04 9.93 -39.39 -0.39 -2.44 16 24 C 0.51 6.06 7.89 31.78 0.25 6.31 16 25 O -0.47 -7.06 17.91 -19.59 -0.35 -7.42 16 26 O -0.27 -3.33 9.82 -20.81 -0.20 -3.54 16 27 C 0.19 2.03 6.76 -38.48 -0.26 1.77 16 28 C -0.18 -2.01 9.94 -39.32 -0.39 -2.40 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 31 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.55 6.44 -51.93 -0.33 0.22 16 35 H 0.09 1.34 6.56 -51.93 -0.34 1.00 16 36 H 0.10 0.96 6.89 -51.93 -0.36 0.60 16 37 H 0.09 0.84 7.62 -51.93 -0.40 0.44 16 38 H 0.14 0.80 6.24 -52.49 -0.33 0.47 16 39 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -35.42 357.52 -7.29 -42.70 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.84 Total: -2.77 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.39 Total: 2.08 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.29 Total: -36.42 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.16 Total: -27.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.57 Total: 16.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.42 -7.29 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264124191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.583 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds