Wall clock time and date at job start Tue Mar 31 2020 17:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 O 1.42904 * 109.46970 * 180.02562 * 16 14 12 18 18 C 1.35749 * 116.99990 * 180.02562 * 17 16 14 19 19 C 1.39377 * 119.72459 * 359.72819 * 18 17 16 20 20 C 1.36462 * 120.42083 * 179.71602 * 19 18 17 21 21 C 1.39968 * 119.79998 * 0.55650 * 20 19 18 22 22 C 1.46432 * 120.98202 * 179.72677 * 21 20 19 23 23 C 1.35853 * 118.19169 * 179.97438 * 22 21 20 24 24 C 1.41003 * 119.82142 * 359.97438 * 23 22 21 25 25 O 1.21790 * 119.15249 * 180.02562 * 24 23 22 26 26 O 1.34224 * 121.69189 * 0.02562 * 24 23 22 27 27 C 1.35029 * 121.46434 * 359.97438 * 26 24 23 28 28 C 1.38515 * 119.72914 * 179.97438 * 18 17 16 29 29 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 30 30 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 31 31 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 32 32 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 34 34 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 35 35 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 36 36 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 37 37 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 38 38 H 1.07997 * 119.78917 * 359.97438 * 19 18 17 39 39 H 1.08007 * 120.09638 * 180.29614 * 20 19 18 40 40 H 1.07993 * 120.90623 * 359.95211 * 22 21 20 41 41 H 1.08000 * 120.08816 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.10471 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 8 4.0904 0.1518 -4.0910 18 6 4.6229 -0.3344 -5.2411 19 6 4.3856 -1.6582 -5.6071 20 6 4.9091 -2.1600 -6.7630 21 6 5.6991 -1.3437 -7.5808 22 6 6.2786 -1.8572 -8.8237 23 6 7.0359 -1.0155 -9.5744 24 6 7.2425 0.3121 -9.1465 25 8 7.9230 1.0564 -9.8293 26 8 6.7083 0.7766 -8.0061 27 6 5.9461 -0.0077 -7.2141 28 6 5.4018 0.4876 -6.0388 29 1 -0.3633 0.4254 -0.9355 30 1 -0.3634 -1.0229 0.0993 31 1 -0.3634 0.5974 0.8361 32 1 2.9613 -0.1040 4.2479 33 1 0.7377 -2.1445 -1.9992 34 1 2.4630 -2.5819 -1.9862 35 1 1.5296 -2.5969 -0.4706 36 1 3.9019 -1.6023 -3.0164 37 1 2.4486 -1.0893 -3.9068 38 1 3.7801 -2.2896 -4.9738 39 1 4.7179 -3.1852 -7.0439 40 1 6.1090 -2.8773 -9.1348 41 1 7.4784 -1.3622 -10.4965 42 1 5.5847 1.5110 -5.7462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264124191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:25 Heat of formation + Delta-G solvation = -110.374787 kcal Electronic energy + Delta-G solvation = -27167.897991 eV Core-core repulsion = 23078.988253 eV Total energy + Delta-G solvation = -4088.909738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.97681 -41.49010 -40.44089 -39.20658 -37.82343 -37.13289 -35.21405 -34.76544 -32.67971 -32.02373 -30.51502 -29.02972 -27.60633 -27.26057 -25.38739 -25.26010 -23.98648 -22.96938 -20.81319 -20.08551 -19.35249 -19.16568 -18.66983 -18.30992 -17.95024 -17.50458 -17.43027 -17.23061 -16.46440 -16.32794 -15.93215 -15.62789 -15.13711 -15.03389 -14.80154 -14.64200 -14.49915 -14.34289 -14.19837 -13.91826 -13.74753 -13.33225 -13.22172 -13.10168 -12.92804 -12.90542 -12.64926 -12.46503 -12.31797 -12.26669 -11.83239 -11.45685 -11.28383 -11.08275 -10.82451 -10.72071 -9.95030 -9.40010 -9.14172 -8.38925 -6.41981 -0.74466 -0.06135 0.52132 1.07164 1.25093 1.32525 1.39459 1.61236 1.72186 1.77202 2.25566 2.60144 2.64626 3.03806 3.15428 3.39580 3.48352 3.51546 3.72551 3.93439 3.99180 4.09335 4.17057 4.41971 4.46658 4.49039 4.61763 4.68682 4.69953 4.74370 4.75696 4.86716 5.04707 5.06198 5.12428 5.17272 5.17550 5.31786 5.36617 5.53050 5.76878 6.05160 6.07575 6.19010 6.36590 6.64615 6.68079 7.20859 7.30504 8.75836 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.002280 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.161164 B =12278.248765 C =12861.650517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.220 3.780 3 H 0.034 0.966 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.918 3.082 9 H -0.289 1.289 10 H -0.251 1.251 11 H -0.278 1.278 12 N -0.590 5.590 13 C 0.069 3.931 14 C 0.492 3.508 15 O -0.596 6.596 16 C 0.050 3.950 17 O -0.315 6.315 18 C 0.183 3.817 19 C -0.222 4.222 20 C 0.015 3.985 21 C -0.209 4.209 22 C 0.055 3.945 23 C -0.283 4.283 24 C 0.499 3.501 25 O -0.524 6.524 26 O -0.297 6.297 27 C 0.165 3.835 28 C -0.205 4.205 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.268 0.732 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.179 0.821 39 H 0.200 0.800 40 H 0.211 0.789 41 H 0.184 0.816 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -13.282 -24.976 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.118 3.882 3 H 0.052 0.948 4 C -0.554 4.554 5 H 0.081 0.919 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.745 3.255 9 H -0.216 1.216 10 H -0.175 1.175 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.073 4.073 14 C 0.280 3.720 15 O -0.477 6.477 16 C -0.027 4.027 17 O -0.227 6.227 18 C 0.136 3.864 19 C -0.240 4.240 20 C -0.003 4.003 21 C -0.210 4.210 22 C 0.037 3.963 23 C -0.302 4.302 24 C 0.352 3.648 25 O -0.416 6.416 26 O -0.210 6.210 27 C 0.121 3.879 28 C -0.225 4.225 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.196 0.804 39 H 0.217 0.783 40 H 0.228 0.772 41 H 0.201 0.799 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.331 -11.938 -24.834 27.556 hybrid contribution 0.437 1.649 0.877 1.919 sum 0.768 -10.289 -23.956 26.084 Atomic orbital electron populations 1.22064 0.95418 1.02185 1.00001 1.19127 0.92825 0.93369 0.82874 0.94787 1.21364 1.43253 0.95065 0.95747 0.91900 1.25558 0.94279 1.01592 0.95449 1.69966 1.46920 1.37334 1.02870 0.86193 0.79377 0.82552 0.77412 1.21590 1.17456 1.20346 1.48215 1.48713 1.13834 1.21420 1.22075 1.02366 0.79613 1.03224 1.20865 0.78993 0.86882 0.85249 1.90684 1.59367 1.19824 1.77841 1.22863 0.97585 0.91978 0.90306 1.86135 1.63512 1.40958 1.32110 1.19013 0.90189 0.92821 0.84387 1.21547 1.07392 0.93465 1.01607 1.21268 0.88597 1.00710 0.89681 1.19454 1.08246 0.92519 1.00815 1.23329 0.84848 1.01190 0.86929 1.22554 1.09474 0.91543 1.06645 1.20040 0.77529 0.90119 0.77100 1.90940 1.38603 1.61939 1.50145 1.83463 1.56990 1.46656 1.33846 1.18783 0.90446 0.89419 0.89278 1.19495 1.05609 1.02294 0.95065 0.93281 0.91290 0.93505 0.92293 0.89802 0.88304 0.91573 0.85231 0.84129 0.80387 0.78322 0.77214 0.79916 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.09 71.98 0.65 -4.51 16 2 C 0.22 9.85 2.27 44.25 0.10 9.95 16 3 H 0.03 1.75 4.11 -2.39 -0.01 1.74 16 4 C -0.52 -27.00 8.72 25.60 0.22 -26.78 16 5 H 0.06 3.44 6.82 -2.91 -0.02 3.42 16 6 C 0.03 1.75 5.47 84.66 0.46 2.21 16 7 N -0.93 -55.46 13.96 21.45 0.30 -55.16 16 8 Si 0.92 45.68 26.91 68.60 1.85 47.53 16 9 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 10 H -0.25 -11.80 6.73 99.48 0.67 -11.13 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 N -0.59 -20.86 2.75 -826.79 -2.28 -23.13 16 13 C 0.07 1.56 9.40 127.77 1.20 2.76 16 14 C 0.49 17.67 7.75 87.66 0.68 18.35 16 15 O -0.60 -28.75 15.83 16.01 0.25 -28.49 16 16 C 0.05 1.05 3.76 71.23 0.27 1.32 16 17 O -0.32 -8.60 9.65 -71.71 -0.69 -9.29 16 18 C 0.18 3.74 6.69 22.61 0.15 3.89 16 19 C -0.22 -2.22 8.96 22.13 0.20 -2.02 16 20 C 0.01 0.08 9.78 22.27 0.22 0.30 16 21 C -0.21 -2.47 5.87 -20.12 -0.12 -2.59 16 22 C 0.05 0.34 10.12 23.85 0.24 0.58 16 23 C -0.28 -3.71 9.93 22.39 0.22 -3.49 16 24 C 0.50 12.33 7.89 68.50 0.54 12.87 16 25 O -0.52 -17.05 17.91 18.98 0.34 -16.71 16 26 O -0.30 -7.93 9.82 14.62 0.14 -7.79 16 27 C 0.17 3.51 6.76 22.98 0.16 3.66 16 28 C -0.21 -4.88 9.94 22.44 0.22 -4.66 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 2.31 7.86 -2.38 -0.02 2.29 16 31 H 0.05 1.83 7.97 -2.39 -0.02 1.81 16 32 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.37 6.44 -2.38 -0.02 1.35 16 35 H 0.07 1.83 6.56 -2.38 -0.02 1.82 16 36 H 0.13 1.85 6.89 -2.39 -0.02 1.84 16 37 H 0.14 1.63 7.62 -2.39 -0.02 1.61 16 38 H 0.18 0.53 6.24 -2.91 -0.02 0.51 16 39 H 0.20 -0.95 8.06 -2.91 -0.02 -0.97 16 40 H 0.21 -1.07 8.06 -2.91 -0.02 -1.09 16 41 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -89.12 357.52 6.37 -82.76 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: 1.03 Total: -1.55 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.42 Total: 11.84 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.98 Total: -78.30 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: 0.04 Total: -62.28 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.85 Total: 47.53 kcal Total: -89.12 6.37 -82.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264124191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.619 kcal (2) G-P(sol) polarization free energy of solvation -89.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds