Wall clock time and date at job start Tue Mar 31 2020 16:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34514 * 125.78451 * 2 1 4 4 C 1.41391 * 106.83732 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.83631 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.78172 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47562 * 339.99919 * 6 5 4 8 8 O 1.42903 * 109.46823 * 219.99963 * 6 5 4 9 9 C 1.53006 * 109.46901 * 100.00387 * 6 5 4 10 10 N 1.46496 * 109.46902 * 184.99485 * 9 6 5 11 11 C 1.34782 * 119.99898 * 179.97438 * 10 9 6 12 12 O 1.21594 * 119.99620 * 0.02562 * 11 10 9 13 13 C 1.47531 * 119.99794 * 180.27934 * 11 10 9 14 14 C 1.39663 * 120.20071 * 359.72350 * 13 11 10 15 15 C 1.37831 * 119.92328 * 179.97438 * 14 13 11 16 16 C 1.38576 * 120.31784 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40323 * 359.97438 * 16 15 14 18 18 C 1.38829 * 120.07471 * 359.70286 * 17 16 15 19 19 O 1.35511 * 120.16495 * 180.27658 * 18 17 16 20 20 C 1.34812 * 116.99945 * 354.39961 * 19 18 17 21 21 H 1.08002 * 120.00187 * 5.06324 * 20 19 18 22 22 C 1.38706 * 120.00274 * 185.06511 * 20 19 18 23 23 N 1.31518 * 119.99475 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00042 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47444 * 89.99968 * 24 22 20 26 26 H 1.48505 * 109.46750 * 209.99856 * 24 22 20 27 27 H 1.48500 * 109.47126 * 329.99426 * 24 22 20 28 28 O 1.34296 * 125.79047 * 180.34461 * 2 1 3 29 29 H 1.09001 * 109.46899 * 90.00400 * 1 2 3 30 30 H 1.08997 * 109.47158 * 210.00183 * 1 2 3 31 31 H 1.09002 * 109.47533 * 330.00346 * 1 2 3 32 32 H 1.07998 * 126.58506 * 0.02562 * 3 2 1 33 33 H 1.07993 * 126.57914 * 180.02562 * 4 3 2 34 34 H 0.96707 * 113.99757 * 300.00098 * 8 6 5 35 35 H 1.09001 * 109.47162 * 64.99656 * 9 6 5 36 36 H 1.09004 * 109.46552 * 304.99628 * 9 6 5 37 37 H 0.97001 * 119.99992 * 0.02562 * 10 9 6 38 38 H 1.08004 * 120.03727 * 359.95421 * 14 13 11 39 39 H 1.07995 * 119.84109 * 179.97438 * 15 14 13 40 40 H 1.08003 * 119.79448 * 179.97438 * 16 15 14 41 41 H 1.08000 * 119.96092 * 180.02562 * 17 16 15 42 42 H 0.96999 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5813 -0.7121 -0.0004 6 6 4.7706 -1.6377 -0.0014 7 1 5.6501 -1.0990 -0.3537 8 8 4.5118 -2.7449 -0.8670 9 6 5.0205 -2.1485 1.4191 10 7 6.2453 -2.9520 1.4407 11 6 6.6662 -3.5081 2.5940 12 8 6.0290 -3.3433 3.6164 13 6 7.9029 -4.3122 2.6169 14 6 8.6377 -4.5046 1.4449 15 6 9.7926 -5.2563 1.4730 16 6 10.2292 -5.8238 2.6594 17 6 9.5134 -5.6422 3.8255 18 6 8.3515 -4.8825 3.8175 19 8 7.6503 -4.6984 4.9624 20 6 8.0686 -5.3739 6.0516 21 1 8.9739 -5.9613 6.0080 22 6 7.3364 -5.3145 7.2281 23 7 6.2343 -4.5988 7.2812 24 14 7.9165 -6.2498 8.7374 25 1 8.8128 -5.3824 9.5432 26 1 6.7423 -6.6448 9.5564 27 1 8.6552 -7.4659 8.3125 28 8 2.2924 -1.0893 -0.0066 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9665 2.1205 0.0004 33 1 4.5212 1.2434 -0.0004 34 1 3.7410 -3.2708 -0.6131 35 1 4.1779 -2.7619 1.7382 36 1 5.1299 -1.3010 2.0959 37 1 6.7537 -3.0831 0.6251 38 1 8.3011 -4.0650 0.5175 39 1 10.3595 -5.4046 0.5658 40 1 11.1351 -6.4117 2.6717 41 1 9.8605 -6.0874 4.7463 42 1 5.7224 -4.5569 8.1041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265974449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:29 Heat of formation + Delta-G solvation = -66.657540 kcal Electronic energy + Delta-G solvation = -27279.705018 eV Core-core repulsion = 23192.691002 eV Total energy + Delta-G solvation = -4087.014016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.82989 -39.62874 -38.40466 -37.27622 -36.31870 -33.90890 -33.38134 -32.43019 -32.32783 -30.78488 -29.20662 -28.89669 -26.20955 -25.32765 -23.41881 -22.43701 -22.05501 -21.29577 -20.49392 -19.86062 -18.11083 -17.85801 -17.70139 -16.46475 -16.19316 -15.90540 -15.64842 -15.12171 -14.68478 -14.50616 -14.29544 -14.13569 -14.00400 -13.71534 -13.53135 -13.43519 -13.26635 -13.16196 -13.02063 -12.65539 -12.47766 -12.20879 -12.03876 -11.73166 -11.70137 -11.30564 -11.12018 -10.89647 -10.79467 -10.58453 -10.45383 -10.07102 -9.57338 -8.89381 -8.87411 -8.61786 -8.50249 -8.26125 -7.30257 -6.44024 -4.03951 1.44401 1.72365 2.33094 2.37609 2.57338 3.11949 3.13116 3.17809 3.61487 3.74269 3.93917 4.11668 4.37859 4.56868 4.64473 4.71000 4.81885 4.90143 5.07512 5.13914 5.14800 5.18808 5.39055 5.45686 5.54901 5.57427 5.64913 5.71137 5.82942 5.88304 5.90089 6.09952 6.13143 6.30857 6.57468 6.69521 6.86374 6.91160 6.92422 7.07328 7.24573 7.29257 7.29967 7.70404 7.92274 8.10392 8.95556 9.08043 9.68194 10.69833 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002835 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.134373 B = 9875.450053 C =11679.212612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.213 4.213 4 C -0.192 4.192 5 C -0.045 4.045 6 C 0.187 3.813 7 H 0.132 0.868 8 O -0.549 6.549 9 C 0.096 3.904 10 N -0.739 5.739 11 C 0.555 3.445 12 O -0.501 6.501 13 C -0.227 4.227 14 C -0.037 4.037 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.124 6.124 20 C -0.404 4.404 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.833 5.833 24 Si 0.941 3.059 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 O -0.170 6.170 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.385 0.615 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 7.221 -15.690 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.233 4.233 4 C -0.211 4.211 5 C -0.096 4.096 6 C 0.127 3.873 7 H 0.150 0.850 8 O -0.354 6.354 9 C -0.028 4.028 10 N -0.396 5.396 11 C 0.344 3.656 12 O -0.375 6.375 13 C -0.232 4.232 14 C -0.056 4.056 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.129 3.871 19 O -0.022 6.022 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.464 5.464 24 Si 0.765 3.235 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.191 1.191 28 O -0.066 6.066 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.612 7.477 -14.932 17.617 hybrid contribution 0.227 -0.416 0.640 0.796 sum -5.385 7.062 -14.292 16.826 Atomic orbital electron populations 1.20322 0.85010 1.04266 1.03478 1.22504 0.94066 0.84117 1.05296 1.21574 0.92595 0.99474 1.09608 1.21601 0.98521 0.93613 1.07358 1.23033 0.83517 0.95270 1.07756 1.20703 0.91262 0.84850 0.90505 0.85019 1.86564 1.53044 1.42050 1.53785 1.21860 0.89117 0.96537 0.95316 1.45743 1.26898 1.55076 1.11908 1.18250 0.85144 0.79428 0.82735 1.90957 1.56058 1.58623 1.31845 1.18808 0.99792 1.11768 0.92790 1.20782 0.93848 0.95678 0.95302 1.20470 0.99957 1.06715 0.97823 1.20903 0.97503 0.96109 0.92398 1.21155 0.98128 1.06977 0.99475 1.19277 0.90011 0.90945 0.86819 1.84169 1.47602 1.56534 1.13928 1.21500 1.10027 1.28699 0.87734 0.88863 1.25388 0.95234 0.97098 0.98615 1.70131 1.13274 1.35397 1.27626 0.85726 0.78426 0.79342 0.80005 1.19751 1.20139 1.19059 1.83910 1.16007 1.35214 1.71503 0.90097 0.90366 0.89271 0.83358 0.83149 0.76630 0.91032 0.90385 0.76829 0.86924 0.87232 0.87179 0.85078 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.12 16 2 C -0.01 -0.10 7.32 -35.62 -0.26 -0.36 16 3 C -0.21 -2.20 10.81 -39.70 -0.43 -2.63 16 4 C -0.19 -2.10 10.80 -39.70 -0.43 -2.53 16 5 C -0.04 -0.53 6.18 -35.62 -0.22 -0.75 16 6 C 0.19 2.06 3.47 -27.88 -0.10 1.96 16 7 H 0.13 1.22 8.13 -51.93 -0.42 0.80 16 8 O -0.55 -6.08 13.27 -37.56 -0.50 -6.58 16 9 C 0.10 1.38 5.29 -4.04 -0.02 1.36 16 10 N -0.74 -11.88 5.45 -61.35 -0.33 -12.21 16 11 C 0.55 12.24 7.76 -12.47 -0.10 12.14 16 12 O -0.50 -13.80 15.17 -16.57 -0.25 -14.05 16 13 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 14 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -3.80 10.03 -39.61 -0.40 -4.20 16 16 C -0.05 -0.90 10.03 -39.53 -0.40 -1.29 16 17 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 18 C 0.19 4.72 6.66 -38.60 -0.26 4.47 16 19 O -0.12 -3.69 7.84 -21.02 -0.16 -3.85 16 20 C -0.40 -11.48 9.49 30.91 0.29 -11.19 16 21 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 22 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 23 N -0.83 -25.24 13.67 55.48 0.76 -24.48 16 24 Si 0.94 20.61 29.55 -169.99 -5.02 15.58 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 O -0.17 -2.08 10.58 3.41 0.04 -2.05 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.39 3.54 8.97 45.56 0.41 3.95 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 5.22 6.50 -40.82 -0.27 4.96 16 38 H 0.11 1.51 6.40 -52.48 -0.34 1.17 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -36.68 367.28 -7.45 -44.13 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.12 Total: 12.04 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.38 Total: -14.07 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.42 Total: -36.69 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.88 Total: -26.53 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.68 -7.45 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265974449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.524 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds