Wall clock time and date at job start Tue Mar 31 2020 16:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34514 * 125.78451 * 2 1 4 4 C 1.41391 * 106.83732 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.83631 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.78172 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47562 * 339.99919 * 6 5 4 8 8 O 1.42903 * 109.46823 * 219.99963 * 6 5 4 9 9 C 1.53006 * 109.46901 * 100.00387 * 6 5 4 10 10 N 1.46496 * 109.46902 * 184.99485 * 9 6 5 11 11 C 1.34782 * 119.99898 * 179.97438 * 10 9 6 12 12 O 1.21594 * 119.99620 * 0.02562 * 11 10 9 13 13 C 1.47531 * 119.99794 * 180.27934 * 11 10 9 14 14 C 1.39663 * 120.20071 * 359.72350 * 13 11 10 15 15 C 1.37831 * 119.92328 * 179.97438 * 14 13 11 16 16 C 1.38576 * 120.31784 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40323 * 359.97438 * 16 15 14 18 18 C 1.38829 * 120.07471 * 359.70286 * 17 16 15 19 19 O 1.35511 * 120.16495 * 180.27658 * 18 17 16 20 20 C 1.34812 * 116.99945 * 354.39961 * 19 18 17 21 21 H 1.08002 * 120.00187 * 5.06324 * 20 19 18 22 22 C 1.38706 * 120.00274 * 185.06511 * 20 19 18 23 23 N 1.31518 * 119.99475 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00042 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47444 * 89.99968 * 24 22 20 26 26 H 1.48505 * 109.46750 * 209.99856 * 24 22 20 27 27 H 1.48500 * 109.47126 * 329.99426 * 24 22 20 28 28 O 1.34296 * 125.79047 * 180.34461 * 2 1 3 29 29 H 1.09001 * 109.46899 * 90.00400 * 1 2 3 30 30 H 1.08997 * 109.47158 * 210.00183 * 1 2 3 31 31 H 1.09002 * 109.47533 * 330.00346 * 1 2 3 32 32 H 1.07998 * 126.58506 * 0.02562 * 3 2 1 33 33 H 1.07993 * 126.57914 * 180.02562 * 4 3 2 34 34 H 0.96707 * 113.99757 * 300.00098 * 8 6 5 35 35 H 1.09001 * 109.47162 * 64.99656 * 9 6 5 36 36 H 1.09004 * 109.46552 * 304.99628 * 9 6 5 37 37 H 0.97001 * 119.99992 * 0.02562 * 10 9 6 38 38 H 1.08004 * 120.03727 * 359.95421 * 14 13 11 39 39 H 1.07995 * 119.84109 * 179.97438 * 15 14 13 40 40 H 1.08003 * 119.79448 * 179.97438 * 16 15 14 41 41 H 1.08000 * 119.96092 * 180.02562 * 17 16 15 42 42 H 0.96999 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5813 -0.7121 -0.0004 6 6 4.7706 -1.6377 -0.0014 7 1 5.6501 -1.0990 -0.3537 8 8 4.5118 -2.7449 -0.8670 9 6 5.0205 -2.1485 1.4191 10 7 6.2453 -2.9520 1.4407 11 6 6.6662 -3.5081 2.5940 12 8 6.0290 -3.3433 3.6164 13 6 7.9029 -4.3122 2.6169 14 6 8.6377 -4.5046 1.4449 15 6 9.7926 -5.2563 1.4730 16 6 10.2292 -5.8238 2.6594 17 6 9.5134 -5.6422 3.8255 18 6 8.3515 -4.8825 3.8175 19 8 7.6503 -4.6984 4.9624 20 6 8.0686 -5.3739 6.0516 21 1 8.9739 -5.9613 6.0080 22 6 7.3364 -5.3145 7.2281 23 7 6.2343 -4.5988 7.2812 24 14 7.9165 -6.2498 8.7374 25 1 8.8128 -5.3824 9.5432 26 1 6.7423 -6.6448 9.5564 27 1 8.6552 -7.4659 8.3125 28 8 2.2924 -1.0893 -0.0066 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9665 2.1205 0.0004 33 1 4.5212 1.2434 -0.0004 34 1 3.7410 -3.2708 -0.6131 35 1 4.1779 -2.7619 1.7382 36 1 5.1299 -1.3010 2.0959 37 1 6.7537 -3.0831 0.6251 38 1 8.3011 -4.0650 0.5175 39 1 10.3595 -5.4046 0.5658 40 1 11.1351 -6.4117 2.6717 41 1 9.8605 -6.0874 4.7463 42 1 5.7224 -4.5569 8.1041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265974449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:25 Heat of formation + Delta-G solvation = -94.545404 kcal Electronic energy + Delta-G solvation = -27280.914327 eV Core-core repulsion = 23192.691002 eV Total energy + Delta-G solvation = -4088.223325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.65715 -41.30943 -39.97002 -38.50179 -38.01053 -35.36680 -34.32502 -34.20939 -33.24779 -32.24521 -30.57160 -30.22944 -27.50942 -27.01699 -24.71874 -23.74045 -22.92993 -22.86614 -21.64359 -21.13653 -19.86124 -19.38350 -18.80717 -17.96594 -17.33863 -17.03415 -16.76318 -16.50941 -16.24900 -15.97056 -15.85080 -15.61337 -15.36641 -15.19063 -15.12583 -14.33373 -14.22104 -14.17111 -14.02693 -13.81851 -13.78814 -13.54977 -13.46631 -12.98131 -12.81776 -12.71525 -12.60980 -12.52366 -12.33542 -12.12703 -11.56086 -11.43649 -10.90221 -10.83503 -10.66577 -10.19144 -9.79291 -9.32984 -9.03512 -8.44848 -6.15775 0.12168 0.59903 0.73358 1.32083 1.43679 1.51263 1.55911 1.76141 2.07467 2.15724 2.28233 2.87572 3.20867 3.24420 3.46061 3.50635 3.60276 3.87298 3.97772 4.04440 4.07585 4.09529 4.29595 4.47322 4.52087 4.57167 4.64635 4.68236 4.70741 4.80978 4.81782 4.98543 5.02588 5.07735 5.14349 5.19027 5.41865 5.48928 5.56641 5.61376 5.70483 5.95920 6.09212 6.17605 6.45155 6.65282 6.94521 7.44245 7.80353 8.75725 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002835 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.134373 B = 9875.450053 C =11679.212612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.021 4.021 3 C -0.227 4.227 4 C -0.195 4.195 5 C -0.070 4.070 6 C 0.206 3.794 7 H 0.158 0.842 8 O -0.551 6.551 9 C 0.098 3.902 10 N -0.710 5.710 11 C 0.549 3.451 12 O -0.569 6.569 13 C -0.244 4.244 14 C -0.029 4.029 15 C -0.200 4.200 16 C -0.039 4.039 17 C -0.258 4.258 18 C 0.148 3.852 19 O -0.189 6.189 20 C -0.428 4.428 21 H 0.107 0.893 22 C -0.023 4.023 23 N -0.906 5.906 24 Si 1.022 2.978 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.248 1.248 28 O -0.189 6.189 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.392 0.608 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.123 0.877 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 6.897 -19.320 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.246 4.246 4 C -0.214 4.214 5 C -0.121 4.121 6 C 0.147 3.853 7 H 0.175 0.825 8 O -0.358 6.358 9 C -0.027 4.027 10 N -0.367 5.367 11 C 0.339 3.661 12 O -0.448 6.448 13 C -0.249 4.249 14 C -0.047 4.047 15 C -0.219 4.219 16 C -0.057 4.057 17 C -0.277 4.277 18 C 0.093 3.907 19 O -0.092 6.092 20 C -0.503 4.503 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.542 5.542 24 Si 0.841 3.159 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.171 1.171 28 O -0.086 6.086 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.188 0.812 33 H 0.187 0.813 34 H 0.242 0.758 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.141 0.859 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.312 7.148 -18.693 20.285 hybrid contribution -0.344 -0.270 1.278 1.351 sum -3.656 6.878 -17.415 19.078 Atomic orbital electron populations 1.20508 0.82607 1.05132 1.04816 1.23301 0.95635 0.83836 1.04303 1.21952 0.92380 1.00614 1.09644 1.21984 0.99670 0.93571 1.06208 1.23158 0.83614 0.95807 1.09472 1.20559 0.92153 0.84786 0.87838 0.82518 1.86536 1.53545 1.42163 1.53559 1.21934 0.87477 0.95375 0.97915 1.45429 1.27036 1.53370 1.10817 1.18557 0.85072 0.79311 0.83167 1.90939 1.58057 1.61185 1.34640 1.19250 1.00360 1.11652 0.93647 1.21319 0.93369 0.94957 0.95062 1.21187 0.98661 1.02911 0.99096 1.21444 0.97980 0.95164 0.91147 1.21301 0.97900 1.07312 1.01198 1.20094 0.91205 0.92378 0.86998 1.84174 1.50171 1.59391 1.15425 1.22046 1.10723 1.29195 0.88377 0.87553 1.26767 0.95160 0.98080 1.02173 1.70326 1.15923 1.39225 1.28680 0.84559 0.78081 0.78247 0.75055 1.18622 1.19769 1.17101 1.83898 1.16476 1.36320 1.71948 0.88408 0.90460 0.87427 0.81167 0.81342 0.75819 0.93017 0.91781 0.74608 0.82210 0.81785 0.82811 0.85891 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.42 71.24 0.74 -0.16 16 2 C -0.02 -0.42 7.32 24.83 0.18 -0.24 16 3 C -0.23 -4.41 10.81 22.19 0.24 -4.17 16 4 C -0.20 -4.06 10.80 22.19 0.24 -3.82 16 5 C -0.07 -1.61 6.18 24.83 0.15 -1.46 16 6 C 0.21 4.29 3.47 29.85 0.10 4.40 16 7 H 0.16 2.46 8.13 -2.39 -0.02 2.44 16 8 O -0.55 -11.26 13.27 -146.75 -1.95 -13.20 16 9 C 0.10 2.86 5.29 86.38 0.46 3.32 16 10 N -0.71 -22.49 5.45 -466.25 -2.54 -25.03 16 11 C 0.55 25.11 7.76 86.69 0.67 25.78 16 12 O -0.57 -33.97 15.17 16.88 0.26 -33.71 16 13 C -0.24 -10.67 5.89 -19.99 -0.12 -10.79 16 14 C -0.03 -0.87 9.53 22.52 0.21 -0.65 16 15 C -0.20 -5.34 10.03 22.25 0.22 -5.12 16 16 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 17 C -0.26 -11.06 9.16 22.36 0.20 -10.86 16 18 C 0.15 7.71 6.66 22.91 0.15 7.86 16 19 O -0.19 -12.13 7.84 0.96 0.01 -12.12 16 20 C -0.43 -26.05 9.49 67.93 0.64 -25.41 16 21 H 0.11 5.80 5.21 -2.91 -0.02 5.79 16 22 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 23 N -0.91 -59.68 13.67 21.62 0.30 -59.39 16 24 Si 1.02 44.51 29.55 68.60 2.03 46.54 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 28 O -0.19 -4.63 10.58 -0.16 0.00 -4.63 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.39 6.90 8.97 -74.05 -0.66 6.24 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.42 9.72 6.50 -92.71 -0.60 9.11 16 38 H 0.16 3.28 6.40 -2.91 -0.02 3.26 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 41 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 42 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -91.99 367.28 2.72 -89.27 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.18 Total: 35.49 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.80 Total: -23.21 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.25 Total: -84.42 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -1.69 Total: -63.67 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -91.99 2.72 -89.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265974449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.273 kcal (2) G-P(sol) polarization free energy of solvation -91.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds