Wall clock time and date at job start Tue Mar 31 2020 16:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34520 * 125.78625 * 2 1 4 4 C 1.41381 * 106.83580 * 180.29744 * 3 2 1 5 5 C 1.50701 * 126.57424 * 179.72986 * 4 3 2 6 6 C 1.53003 * 109.47020 * 120.02652 * 5 4 3 7 7 O 1.42896 * 109.47281 * 0.02910 * 5 4 3 8 8 C 1.52998 * 109.47178 * 240.02330 * 5 4 3 9 9 N 1.46507 * 109.47223 * 184.99999 * 8 5 4 10 10 S 1.65598 * 119.99969 * 165.00040 * 9 8 5 11 11 O 1.42104 * 104.27644 * 181.07328 * 10 9 8 12 12 O 1.42102 * 104.27843 * 308.92972 * 10 9 8 13 13 C 1.81401 * 104.44868 * 65.00474 * 10 9 8 14 14 C 1.53001 * 109.46718 * 179.97438 * 13 10 9 15 15 C 1.50710 * 109.46542 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00424 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99772 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00162 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47149 * 90.00155 * 19 17 15 21 21 H 1.48504 * 109.47030 * 210.00196 * 19 17 15 22 22 H 1.48501 * 109.47361 * 329.99879 * 19 17 15 23 23 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 24 24 C 1.50697 * 125.78872 * 180.11927 * 23 4 3 25 25 O 1.34302 * 125.79164 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47275 * 90.00361 * 1 2 3 27 27 H 1.08999 * 109.46770 * 210.00580 * 1 2 3 28 28 H 1.09001 * 109.47333 * 330.00254 * 1 2 3 29 29 H 1.08002 * 126.57789 * 0.02807 * 3 2 1 30 30 H 1.08998 * 109.47003 * 59.99558 * 6 5 4 31 31 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47089 * 299.99702 * 6 5 4 33 33 H 0.96700 * 113.99826 * 299.99435 * 7 5 4 34 34 H 1.08992 * 109.47486 * 305.00424 * 8 5 4 35 35 H 1.09007 * 109.47046 * 65.00660 * 8 5 4 36 36 H 0.97004 * 119.99619 * 345.00596 * 9 8 5 37 37 H 1.09007 * 109.46997 * 299.99393 * 13 10 9 38 38 H 1.08998 * 109.46978 * 59.99967 * 13 10 9 39 39 H 1.08993 * 109.47422 * 299.99493 * 14 13 10 40 40 H 1.08998 * 109.47422 * 60.00240 * 14 13 10 41 41 H 0.96999 * 120.00298 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47044 * 180.34181 * 24 23 4 43 43 H 1.09006 * 109.47030 * 300.33658 * 24 23 4 44 44 H 1.08998 * 109.47398 * 60.33750 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 4.8731 1.4852 -0.0154 6 6 5.7093 1.1806 1.2292 7 8 4.5032 2.8654 -0.0145 8 6 5.6943 1.1779 -1.2692 9 7 6.9578 1.9178 -1.2189 10 16 8.1984 1.5081 -2.2364 11 8 9.2455 2.4045 -1.8911 12 8 8.3468 0.1058 -2.0612 13 6 7.5644 1.8788 -3.8952 14 6 8.6323 1.5390 -4.9369 15 6 8.1053 1.8464 -6.3150 16 1 7.1088 2.2446 -6.4357 17 6 8.8960 1.6202 -7.4216 18 7 8.4364 1.8889 -8.6242 19 14 10.6200 0.9320 -7.2128 20 1 10.5693 -0.5515 -7.2542 21 1 11.4876 1.4285 -8.3111 22 1 11.1740 1.3722 -5.9072 23 6 3.5814 -0.7121 -0.0013 24 6 4.7706 -1.6377 -0.0029 25 8 2.2925 -1.0894 -0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9664 2.1205 0.0004 30 1 5.9914 0.1277 1.2286 31 1 6.6080 1.7972 1.2230 32 1 5.1243 1.3995 2.1225 33 1 3.9702 3.1302 -0.7767 34 1 5.9010 0.1088 -1.3153 35 1 5.1327 1.4779 -2.1539 36 1 7.0677 2.6477 -0.5894 37 1 6.6703 1.2843 -4.0836 38 1 7.3170 2.9382 -3.9612 39 1 9.5260 2.1337 -4.7483 40 1 8.8801 0.4796 -4.8710 41 1 8.9928 1.7301 -9.4027 42 1 4.4261 -2.6718 -0.0032 43 1 5.3721 -1.4549 -0.8934 44 1 5.3738 -1.4559 0.8866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269775208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:21 Heat of formation + Delta-G solvation = -118.456418 kcal Electronic energy + Delta-G solvation = -27034.118546 eV Core-core repulsion = 23080.302313 eV Total energy + Delta-G solvation = -3953.816233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.96639 -38.83325 -36.72212 -35.60069 -34.66988 -33.96701 -33.66805 -33.24153 -31.50143 -30.18461 -29.86076 -26.59539 -25.98098 -24.92021 -22.44190 -21.42524 -21.31702 -19.79067 -18.94160 -17.73654 -17.57145 -16.95886 -16.61850 -16.23049 -15.73948 -15.54630 -15.19349 -14.79200 -14.57658 -14.30234 -13.97170 -13.87405 -13.66031 -13.54827 -13.29063 -13.17675 -12.86915 -12.80247 -12.61287 -12.21546 -12.05018 -11.91708 -11.90032 -11.74589 -11.74374 -11.65331 -11.36953 -11.26643 -11.21093 -10.49272 -10.44386 -10.17059 -9.86154 -9.81982 -9.50870 -9.17476 -8.67738 -8.42151 -6.17947 -4.19370 0.64363 1.43475 2.25162 2.63672 2.99422 3.25500 3.33021 3.37174 3.91321 4.10579 4.27718 4.34624 4.39474 4.48219 4.59215 4.66122 4.80019 4.91664 5.01447 5.03953 5.11009 5.13804 5.22626 5.30415 5.37451 5.43605 5.49144 5.52760 5.55463 5.63180 5.69746 5.78435 5.87837 5.90305 6.09671 6.25892 6.26217 6.79765 6.90419 6.91058 7.03956 7.38440 7.53268 8.34993 8.82988 9.41660 10.94433 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.003095 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.878988 B = 9043.246393 C = 9752.899307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.192 4.192 4 C -0.208 4.208 5 C 0.205 3.795 6 C -0.142 4.142 7 O -0.547 6.547 8 C 0.087 3.913 9 N -1.119 6.119 10 S 2.591 3.409 11 O -0.965 6.965 12 O -0.967 6.967 13 C -0.584 4.584 14 C -0.007 4.007 15 C -0.520 4.520 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.261 1.261 23 C 0.005 3.995 24 C -0.091 4.091 25 O -0.172 6.172 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.379 0.621 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 -3.324 20.431 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.211 4.211 4 C -0.210 4.210 5 C 0.163 3.837 6 C -0.199 4.199 7 O -0.353 6.353 8 C -0.040 4.040 9 N -0.878 5.878 10 S 2.688 3.312 11 O -0.955 6.955 12 O -0.957 6.957 13 C -0.717 4.717 14 C -0.046 4.046 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.533 5.533 19 Si 0.695 3.305 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.046 4.046 24 C -0.146 4.146 25 O -0.069 6.069 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.167 0.833 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.332 -4.134 20.981 25.200 hybrid contribution -0.060 0.414 -0.828 0.928 sum -13.392 -3.720 20.152 24.481 Atomic orbital electron populations 1.20290 0.85069 1.03935 1.03582 1.22365 0.93969 0.84020 1.06554 1.21293 0.91497 0.99552 1.08764 1.20666 0.95870 0.93617 1.10863 1.19433 0.88800 0.80432 0.95044 1.21837 0.99681 1.02613 0.95744 1.86539 1.74529 1.24121 1.50099 1.22053 0.85402 0.97915 0.98597 1.55655 1.28994 1.48238 1.54900 1.05573 0.73726 0.74539 0.77392 1.93567 1.53080 1.66187 1.82715 1.93536 1.85024 1.31757 1.85368 1.30302 1.11559 1.11425 1.18394 1.19409 0.92818 0.97309 0.95094 1.20850 1.02878 1.44495 0.87675 0.90441 1.24987 0.98306 0.94718 0.95093 1.69876 1.37437 1.48035 0.97998 0.86923 0.84756 0.80061 0.78712 1.19661 1.20747 1.18586 1.22154 0.83359 0.93928 1.05129 1.20675 0.91429 0.98033 1.04498 1.83976 1.16181 1.35073 1.71680 0.90039 0.90673 0.89381 0.83256 0.90464 0.90989 0.91593 0.77312 0.89102 0.91088 0.74750 0.85865 0.85436 0.94903 0.95367 0.92363 0.90162 0.88566 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.42 36.01 0.38 -0.04 16 2 C -0.02 -0.18 7.32 -35.62 -0.26 -0.44 16 3 C -0.19 -1.83 10.01 -39.70 -0.40 -2.23 16 4 C -0.21 -2.14 4.83 -104.74 -0.51 -2.64 16 5 C 0.21 2.05 0.83 -91.77 -0.08 1.97 16 6 C -0.14 -1.37 8.47 37.16 0.31 -1.05 16 7 O -0.55 -5.29 12.33 -35.23 -0.43 -5.73 16 8 C 0.09 0.95 5.19 -4.04 -0.02 0.93 16 9 N -1.12 -13.62 5.29 -10.61 -0.06 -13.67 16 10 S 2.59 42.59 5.46 -107.50 -0.59 42.00 16 11 O -0.97 -18.73 18.08 -57.54 -1.04 -19.77 16 12 O -0.97 -17.97 17.50 -57.54 -1.01 -18.98 16 13 C -0.58 -10.46 6.01 37.16 0.22 -10.24 16 14 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 15 C -0.52 -14.44 9.66 -34.43 -0.33 -14.77 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 19 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 C 0.00 0.05 7.14 -35.63 -0.25 -0.21 16 24 C -0.09 -0.76 9.04 36.00 0.33 -0.44 16 25 O -0.17 -1.90 10.65 5.71 0.06 -1.84 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.15 1.16 7.93 -52.49 -0.42 0.74 16 30 H 0.08 0.67 5.33 -51.93 -0.28 0.39 16 31 H 0.07 0.70 6.89 -51.93 -0.36 0.34 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.38 2.65 8.75 45.56 0.40 3.05 16 34 H 0.09 0.99 4.75 -51.93 -0.25 0.75 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.42 4.59 7.54 -34.47 -0.26 4.33 16 37 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 38 H 0.13 2.10 8.14 -51.92 -0.42 1.67 16 39 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 40 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.84 5.96 -51.93 -0.31 0.53 16 44 H 0.09 0.66 6.07 -51.93 -0.32 0.34 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -36.15 369.33 -7.73 -43.88 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.52 Total: 5.51 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -0.82 Total: -27.47 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.72 Total: -39.87 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.42 Total: -46.32 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 42.59 SS G_CDS: -0.59 Total: 42.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.15 -7.73 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269775208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.581 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds