Wall clock time and date at job start Tue Mar 31 2020 16:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34520 * 125.78625 * 2 1 4 4 C 1.41381 * 106.83580 * 180.29744 * 3 2 1 5 5 C 1.50701 * 126.57424 * 179.72986 * 4 3 2 6 6 C 1.53003 * 109.47020 * 120.02652 * 5 4 3 7 7 O 1.42896 * 109.47281 * 0.02910 * 5 4 3 8 8 C 1.52998 * 109.47178 * 240.02330 * 5 4 3 9 9 N 1.46507 * 109.47223 * 184.99999 * 8 5 4 10 10 S 1.65598 * 119.99969 * 165.00040 * 9 8 5 11 11 O 1.42104 * 104.27644 * 181.07328 * 10 9 8 12 12 O 1.42102 * 104.27843 * 308.92972 * 10 9 8 13 13 C 1.81401 * 104.44868 * 65.00474 * 10 9 8 14 14 C 1.53001 * 109.46718 * 179.97438 * 13 10 9 15 15 C 1.50710 * 109.46542 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00424 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99772 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00162 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47149 * 90.00155 * 19 17 15 21 21 H 1.48504 * 109.47030 * 210.00196 * 19 17 15 22 22 H 1.48501 * 109.47361 * 329.99879 * 19 17 15 23 23 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 24 24 C 1.50697 * 125.78872 * 180.11927 * 23 4 3 25 25 O 1.34302 * 125.79164 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47275 * 90.00361 * 1 2 3 27 27 H 1.08999 * 109.46770 * 210.00580 * 1 2 3 28 28 H 1.09001 * 109.47333 * 330.00254 * 1 2 3 29 29 H 1.08002 * 126.57789 * 0.02807 * 3 2 1 30 30 H 1.08998 * 109.47003 * 59.99558 * 6 5 4 31 31 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47089 * 299.99702 * 6 5 4 33 33 H 0.96700 * 113.99826 * 299.99435 * 7 5 4 34 34 H 1.08992 * 109.47486 * 305.00424 * 8 5 4 35 35 H 1.09007 * 109.47046 * 65.00660 * 8 5 4 36 36 H 0.97004 * 119.99619 * 345.00596 * 9 8 5 37 37 H 1.09007 * 109.46997 * 299.99393 * 13 10 9 38 38 H 1.08998 * 109.46978 * 59.99967 * 13 10 9 39 39 H 1.08993 * 109.47422 * 299.99493 * 14 13 10 40 40 H 1.08998 * 109.47422 * 60.00240 * 14 13 10 41 41 H 0.96999 * 120.00298 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47044 * 180.34181 * 24 23 4 43 43 H 1.09006 * 109.47030 * 300.33658 * 24 23 4 44 44 H 1.08998 * 109.47398 * 60.33750 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 4.8731 1.4852 -0.0154 6 6 5.7093 1.1806 1.2292 7 8 4.5032 2.8654 -0.0145 8 6 5.6943 1.1779 -1.2692 9 7 6.9578 1.9178 -1.2189 10 16 8.1984 1.5081 -2.2364 11 8 9.2455 2.4045 -1.8911 12 8 8.3468 0.1058 -2.0612 13 6 7.5644 1.8788 -3.8952 14 6 8.6323 1.5390 -4.9369 15 6 8.1053 1.8464 -6.3150 16 1 7.1088 2.2446 -6.4357 17 6 8.8960 1.6202 -7.4216 18 7 8.4364 1.8889 -8.6242 19 14 10.6200 0.9320 -7.2128 20 1 10.5693 -0.5515 -7.2542 21 1 11.4876 1.4285 -8.3111 22 1 11.1740 1.3722 -5.9072 23 6 3.5814 -0.7121 -0.0013 24 6 4.7706 -1.6377 -0.0029 25 8 2.2925 -1.0894 -0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9664 2.1205 0.0004 30 1 5.9914 0.1277 1.2286 31 1 6.6080 1.7972 1.2230 32 1 5.1243 1.3995 2.1225 33 1 3.9702 3.1302 -0.7767 34 1 5.9010 0.1088 -1.3153 35 1 5.1327 1.4779 -2.1539 36 1 7.0677 2.6477 -0.5894 37 1 6.6703 1.2843 -4.0836 38 1 7.3170 2.9382 -3.9612 39 1 9.5260 2.1337 -4.7483 40 1 8.8801 0.4796 -4.8710 41 1 8.9928 1.7301 -9.4027 42 1 4.4261 -2.6718 -0.0032 43 1 5.3721 -1.4549 -0.8934 44 1 5.3738 -1.4559 0.8866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269775208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:20 Heat of formation + Delta-G solvation = -147.328889 kcal Electronic energy + Delta-G solvation = -27035.370550 eV Core-core repulsion = 23080.302313 eV Total energy + Delta-G solvation = -3955.068237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.68674 -39.63032 -38.15052 -37.03310 -35.89006 -35.57223 -34.45332 -33.87995 -33.47074 -30.95800 -30.42756 -27.88406 -27.43260 -25.57280 -23.26943 -23.13929 -22.13276 -20.67257 -20.11915 -19.35599 -18.66559 -18.22422 -17.45863 -17.16680 -17.07772 -16.58821 -16.38873 -16.10750 -15.83822 -15.45889 -15.14856 -14.81732 -14.60071 -14.54696 -14.15656 -14.00632 -13.79188 -13.71699 -13.52196 -13.23589 -13.22318 -13.15778 -13.10239 -13.06566 -12.95063 -12.87889 -12.74493 -12.44843 -12.23748 -12.09974 -11.93983 -11.71211 -11.34139 -11.21558 -10.84098 -10.61002 -10.36465 -9.11876 -8.36308 -6.42130 -0.71126 0.71664 1.32667 1.34707 1.44772 1.52034 1.80243 1.99352 2.30038 2.75224 2.97875 3.22511 3.23437 3.56924 3.63236 3.79241 3.91176 3.93815 4.07100 4.10131 4.27971 4.34787 4.46131 4.49188 4.57431 4.63661 4.71407 4.72691 4.80246 4.83501 4.90177 5.02162 5.07040 5.08846 5.10822 5.12290 5.21702 5.43210 5.47829 5.59407 6.07821 6.16931 6.19795 6.64102 6.76099 7.22401 8.79262 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.003095 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.878988 B = 9043.246393 C = 9752.899307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.028 4.028 3 C -0.205 4.205 4 C -0.215 4.215 5 C 0.214 3.786 6 C -0.147 4.147 7 O -0.554 6.554 8 C 0.077 3.923 9 N -1.101 6.101 10 S 2.625 3.375 11 O -0.992 6.992 12 O -0.985 6.985 13 C -0.591 4.591 14 C -0.018 4.018 15 C -0.528 4.528 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.941 5.941 19 Si 0.926 3.074 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.249 1.249 23 C -0.011 4.011 24 C -0.093 4.093 25 O -0.189 6.189 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.164 0.836 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.390 0.610 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.426 0.574 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.270 0.730 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.642 -3.617 22.033 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.223 4.223 4 C -0.218 4.218 5 C 0.171 3.829 6 C -0.204 4.204 7 O -0.361 6.361 8 C -0.050 4.050 9 N -0.863 5.863 10 S 2.720 3.280 11 O -0.983 6.983 12 O -0.975 6.975 13 C -0.723 4.723 14 C -0.057 4.057 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.580 5.580 19 Si 0.748 3.252 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.172 1.172 23 C -0.061 4.061 24 C -0.149 4.149 25 O -0.086 6.086 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.182 0.818 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.240 0.760 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.264 0.736 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.550 -4.413 22.577 26.698 hybrid contribution -0.156 0.542 -1.286 1.404 sum -13.706 -3.871 21.291 25.616 Atomic orbital electron populations 1.20452 0.82765 1.05109 1.04488 1.23066 0.95411 0.83639 1.05653 1.21554 0.91317 1.00415 1.09056 1.20771 0.96247 0.93696 1.11064 1.19300 0.88557 0.80578 0.94480 1.21909 0.99611 1.03204 0.95701 1.86522 1.74815 1.23854 1.50955 1.22313 0.84772 0.97938 0.99933 1.55204 1.28793 1.48626 1.53678 1.04371 0.73494 0.73550 0.76573 1.93528 1.54934 1.66883 1.82927 1.93513 1.85547 1.32972 1.85431 1.30315 1.10713 1.12691 1.18537 1.19374 0.94376 0.97567 0.94340 1.21188 1.01832 1.43534 0.90111 0.93305 1.25885 1.02607 0.95281 0.94801 1.70006 1.39243 1.49830 0.98961 0.86017 0.79859 0.79952 0.79363 1.18412 1.20051 1.17212 1.22501 0.83640 0.94468 1.05456 1.20758 0.90983 0.98335 1.04808 1.83977 1.16644 1.36013 1.72015 0.89156 0.90072 0.87635 0.81802 0.89667 0.91078 0.91550 0.76001 0.88949 0.89751 0.73629 0.84245 0.84206 0.94996 0.94853 0.92138 0.89295 0.88921 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.42 71.24 0.74 0.05 16 2 C -0.03 -0.50 7.32 24.83 0.18 -0.31 16 3 C -0.20 -3.59 10.01 22.19 0.22 -3.36 16 4 C -0.22 -4.12 4.83 -19.94 -0.10 -4.21 16 5 C 0.21 3.87 0.83 -11.54 -0.01 3.86 16 6 C -0.15 -2.59 8.47 71.98 0.61 -1.98 16 7 O -0.55 -9.57 12.33 -148.98 -1.84 -11.40 16 8 C 0.08 1.52 5.19 86.38 0.45 1.97 16 9 N -1.10 -24.46 5.29 -187.48 -0.99 -25.45 16 10 S 2.62 81.57 5.46 -56.49 -0.31 81.26 16 11 O -0.99 -36.88 18.08 -127.65 -2.31 -39.19 16 12 O -0.98 -34.77 17.50 -127.65 -2.23 -37.01 16 13 C -0.59 -20.40 6.01 71.98 0.43 -19.97 16 14 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 15 C -0.53 -29.55 9.66 25.60 0.25 -29.30 16 16 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 17 C 0.01 0.73 5.47 84.66 0.46 1.20 16 18 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 19 Si 0.93 43.50 27.47 68.60 1.88 45.38 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 23 C -0.01 -0.21 7.14 24.83 0.18 -0.03 16 24 C -0.09 -1.46 9.04 71.23 0.64 -0.82 16 25 O -0.19 -4.01 10.65 -2.47 -0.03 -4.03 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.16 2.23 7.93 -2.91 -0.02 2.21 16 30 H 0.08 1.33 5.33 -2.39 -0.01 1.31 16 31 H 0.07 1.24 6.89 -2.39 -0.02 1.23 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.39 4.61 8.75 -74.06 -0.65 3.97 16 34 H 0.09 1.85 4.75 -2.39 -0.01 1.84 16 35 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.43 8.41 7.54 -96.74 -0.73 7.68 16 37 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 38 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 39 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 40 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.51 5.96 -2.38 -0.01 1.50 16 44 H 0.10 1.33 6.07 -2.39 -0.01 1.32 16 Total: -1.00 -76.96 369.33 -1.73 -78.69 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.39 Total: 22.68 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 4.18 Total: -53.60 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -0.69 Total: -82.78 kcal Atomic # 8 Polarization: -85.22 SS G_CDS: -6.40 Total: -91.63 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 16 Polarization: 81.57 SS G_CDS: -0.31 Total: 81.26 kcal Total: -76.96 -1.73 -78.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269775208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.642 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds