Wall clock time and date at job start Tue Mar 31 2020 17:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46711 * 2 1 4 4 C 1.52999 * 109.46901 * 119.99276 * 2 1 3 5 5 O 1.42895 * 109.47211 * 55.00360 * 4 2 1 6 6 C 1.42905 * 114.00600 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47464 * 179.97438 * 6 5 4 8 8 F 1.39902 * 109.47080 * 60.00174 * 7 6 5 9 9 F 1.39901 * 109.46931 * 179.97438 * 7 6 5 10 10 F 1.39894 * 109.47012 * 300.00011 * 7 6 5 11 11 N 1.46496 * 109.47220 * 239.99572 * 2 1 3 12 12 C 1.34770 * 120.00002 * 84.72527 * 11 2 1 13 13 O 1.21595 * 120.00067 * 0.27577 * 12 11 2 14 14 C 1.47640 * 120.00090 * 180.27376 * 12 11 2 15 15 C 1.40012 * 119.89721 * 359.72494 * 14 12 11 16 16 C 1.36320 * 120.10769 * 179.71499 * 15 14 12 17 17 C 1.40882 * 119.89093 * 0.57966 * 16 15 14 18 18 C 1.41111 * 120.10174 * 179.67424 * 17 16 15 19 19 H 1.08004 * 119.99806 * 204.65321 * 18 17 16 20 20 C 1.40219 * 120.00268 * 24.65128 * 18 17 16 21 21 N 1.30648 * 119.99964 * 17.86563 * 20 18 17 22 22 Si 1.86800 * 120.00204 * 197.86665 * 20 18 17 23 23 H 1.48498 * 109.47095 * 90.00612 * 22 20 18 24 24 H 1.48505 * 109.47039 * 210.00177 * 22 20 18 25 25 H 1.48493 * 109.47073 * 329.99814 * 22 20 18 26 26 C 1.40887 * 119.79289 * 359.69793 * 17 16 15 27 27 C 1.36309 * 119.89519 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.46765 * 60.00324 * 1 2 3 29 29 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46935 * 300.00371 * 1 2 3 31 31 H 1.09005 * 109.46824 * 175.00361 * 4 2 1 32 32 H 1.09002 * 109.47275 * 295.00305 * 4 2 1 33 33 H 1.08999 * 109.46519 * 300.00276 * 6 5 4 34 34 H 1.08997 * 109.46711 * 59.99312 * 6 5 4 35 35 H 0.97002 * 119.99806 * 264.99774 * 11 2 1 36 36 H 1.08003 * 119.94467 * 0.02562 * 15 14 12 37 37 H 1.08005 * 120.05181 * 180.25635 * 16 15 14 38 38 H 0.97000 * 120.00535 * 180.02562 * 21 20 18 39 39 H 1.08010 * 120.05098 * 179.97438 * 26 17 16 40 40 H 1.08002 * 119.95192 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4702 -2.0302 1.3097 6 6 1.8844 -2.7927 2.4451 7 6 1.2160 -4.1684 2.4069 8 9 1.5894 -4.8360 1.2355 9 9 1.6220 -4.9151 3.5182 10 9 -0.1740 -4.0124 2.4319 11 7 2.0184 -0.6907 -1.1961 12 6 2.1418 -0.0198 -2.3584 13 8 1.8527 1.1600 -2.4131 14 6 2.6282 -0.7173 -3.5653 15 6 2.9661 -2.0744 -3.4985 16 6 3.4102 -2.7242 -4.6116 17 6 3.5405 -2.0249 -5.8276 18 6 4.0062 -2.6914 -6.9809 19 1 4.4795 -2.1315 -7.7740 20 6 3.8547 -4.0805 -7.0972 21 7 2.9976 -4.7099 -6.3382 22 14 4.8782 -5.0312 -8.3374 23 1 6.1444 -5.4727 -7.6995 24 1 4.1169 -6.2191 -8.8007 25 1 5.1868 -4.1576 -9.4979 26 6 3.2048 -0.6579 -5.8885 27 6 2.7553 -0.0184 -4.7719 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.1263 -0.7993 1.2057 32 1 1.7515 -0.1581 2.1370 33 1 2.9675 -2.9139 2.4258 34 1 1.5932 -2.2728 3.3577 35 1 2.2491 -1.6318 -1.1524 36 1 2.8700 -2.6086 -2.5647 37 1 3.6666 -3.7721 -4.5600 38 1 2.8929 -5.6709 -6.4183 39 1 3.3035 -0.1176 -6.8185 40 1 2.4973 1.0294 -4.8176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270337194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:20 Heat of formation + Delta-G solvation = -246.166004 kcal Electronic energy + Delta-G solvation = -27908.139023 eV Core-core repulsion = 23271.484196 eV Total energy + Delta-G solvation = -4636.654827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.08053 -48.63728 -48.57364 -40.92287 -39.47740 -38.77167 -36.21540 -35.66108 -32.87507 -31.43686 -31.24535 -30.40575 -27.70457 -27.29752 -24.24709 -24.06675 -22.85907 -22.04931 -21.18420 -19.60726 -19.59710 -19.35728 -18.95043 -18.27928 -17.74553 -17.19190 -17.01326 -16.39530 -15.80328 -15.74741 -15.59734 -15.46261 -15.37396 -15.07294 -15.01760 -14.81772 -14.75148 -14.73280 -14.45169 -14.22259 -13.91339 -13.68853 -13.43251 -13.31235 -13.04990 -12.86283 -12.77536 -12.61602 -12.38780 -12.27562 -12.01940 -11.75583 -11.36053 -11.12209 -10.90107 -10.64589 -10.04783 -9.56797 -9.39975 -8.78806 -6.48091 0.45583 1.15545 1.38953 1.43638 1.50725 1.53614 2.13522 2.17859 2.30116 2.44745 2.79888 2.88019 3.03854 3.44307 3.69936 3.79709 4.09039 4.15570 4.17777 4.28314 4.30869 4.39426 4.45985 4.47990 4.62469 4.82280 4.92902 5.00688 5.04480 5.17052 5.30706 5.34731 5.58482 5.64116 5.81440 5.85539 5.95972 6.00240 6.23356 6.54683 6.73459 6.77852 6.89704 7.47493 8.16385 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003059 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.392569 B = 9151.646710 C =11224.965678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.096 0.904 4 C 0.064 3.936 5 O -0.393 6.393 6 C 0.021 3.979 7 C 0.454 3.546 8 F -0.191 7.191 9 F -0.178 7.178 10 F -0.188 7.188 11 N -0.720 5.720 12 C 0.574 3.426 13 O -0.603 6.603 14 C -0.294 4.294 15 C -0.053 4.053 16 C -0.199 4.199 17 C 0.102 3.898 18 C -0.475 4.475 19 H 0.086 0.914 20 C 0.038 3.962 21 N -0.800 5.800 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.266 1.266 25 H -0.257 1.257 26 C -0.254 4.254 27 C -0.032 4.032 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.406 0.594 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.296 0.704 39 H 0.104 0.896 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -0.875 19.288 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.114 0.886 4 C -0.012 4.012 5 O -0.313 6.313 6 C -0.057 4.057 7 C 0.400 3.600 8 F -0.173 7.173 9 F -0.159 7.159 10 F -0.170 7.170 11 N -0.372 5.372 12 C 0.367 3.633 13 O -0.487 6.487 14 C -0.299 4.299 15 C -0.072 4.072 16 C -0.218 4.218 17 C 0.099 3.901 18 C -0.502 4.502 19 H 0.104 0.896 20 C -0.181 4.181 21 N -0.423 5.423 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.180 1.180 26 C -0.273 4.273 27 C -0.051 4.051 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.243 0.757 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.661 -0.387 19.207 19.223 hybrid contribution 0.194 -1.056 -0.678 1.270 sum -0.467 -1.443 18.530 18.592 Atomic orbital electron populations 1.22039 0.94937 1.02246 1.02017 1.21162 0.95064 0.96864 0.83243 0.88580 1.22995 0.98431 0.81964 0.97793 1.87902 1.70825 1.28207 1.44384 1.23694 1.01550 0.87133 0.93308 1.20662 0.77050 0.89100 0.73180 1.93218 1.91125 1.83301 1.49654 1.93204 1.90330 1.78992 1.53377 1.93193 1.31916 1.95805 1.96078 1.45870 1.67904 1.14442 1.09017 1.18337 0.75709 0.85595 0.83653 1.90607 1.54468 1.17550 1.86119 1.19230 1.20950 0.95316 0.94354 1.20705 0.96111 0.92691 0.97718 1.21003 1.08230 1.00183 0.92378 1.18124 0.86726 0.91780 0.93463 1.20124 1.33368 0.93345 1.03373 0.89634 1.26934 0.94258 0.98529 0.98375 1.69773 1.25787 1.12042 1.34714 0.85102 0.78555 0.77545 0.78014 1.18266 1.19012 1.18035 1.20865 1.12264 0.96278 0.97934 1.20512 0.94569 0.97956 0.92086 0.94976 0.92355 0.89251 0.90359 0.87540 0.86270 0.85372 0.75703 0.86342 0.87024 0.89233 0.87772 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.28 71.98 0.67 -3.07 16 2 C 0.14 3.35 2.98 44.99 0.13 3.48 16 3 H 0.10 2.41 7.58 -2.39 -0.02 2.40 16 4 C 0.06 0.92 5.68 71.98 0.41 1.33 16 5 O -0.39 -6.80 9.08 -148.98 -1.35 -8.15 16 6 C 0.02 0.23 5.90 71.98 0.42 0.65 16 7 C 0.45 7.90 3.32 71.98 0.24 8.14 16 8 F -0.19 -4.46 17.26 44.97 0.78 -3.68 16 9 F -0.18 -2.90 17.32 44.97 0.78 -2.12 16 10 F -0.19 -3.95 17.26 44.97 0.78 -3.17 16 11 N -0.72 -22.70 5.01 -445.60 -2.23 -24.93 16 12 C 0.57 23.80 7.73 86.73 0.67 24.47 16 13 O -0.60 -27.90 15.99 -4.01 -0.06 -27.96 16 14 C -0.29 -13.53 5.89 -19.93 -0.12 -13.64 16 15 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 16 C -0.20 -10.00 8.63 22.47 0.19 -9.81 16 17 C 0.10 5.38 5.58 -21.28 -0.12 5.26 16 18 C -0.47 -24.26 9.04 23.46 0.21 -24.04 16 19 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 20 C 0.04 1.78 5.14 85.35 0.44 2.22 16 21 N -0.80 -38.99 10.95 21.87 0.24 -38.75 16 22 Si 0.99 35.21 29.60 68.60 2.03 37.24 16 23 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 24 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 25 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 26 C -0.25 -12.73 9.73 22.47 0.22 -12.51 16 27 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16 28 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.50 7.56 -2.39 -0.02 1.48 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.41 12.02 6.38 -92.71 -0.59 11.43 16 36 H 0.12 4.47 6.37 -2.91 -0.02 4.45 16 37 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 38 H 0.30 12.88 8.29 -92.71 -0.77 12.12 16 39 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -65.55 356.46 5.25 -60.30 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.50 Total: 32.29 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.79 Total: -21.05 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -1.99 Total: -63.69 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.42 Total: -36.12 kcal Atomic # 9 Polarization: -11.31 SS G_CDS: 2.33 Total: -8.98 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -65.55 5.25 -60.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270337194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.867 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds