Wall clock time and date at job start Tue Mar 31 2020 16:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 H 1.08995 * 109.46892 * 304.99840 * 3 2 1 5 5 N 1.46498 * 109.47171 * 65.00469 * 3 2 1 6 6 C 1.34774 * 119.99669 * 274.99956 * 5 3 2 7 7 O 1.21550 * 120.00221 * 359.97438 * 6 5 3 8 8 C 1.47886 * 120.00168 * 180.27493 * 6 5 3 9 9 C 1.39920 * 120.02326 * 359.44637 * 8 6 5 10 10 C 1.38327 * 120.36048 * 179.71545 * 9 8 6 11 11 C 1.37753 * 120.40898 * 0.56504 * 10 9 8 12 12 C 1.40746 * 120.04035 * 359.71592 * 11 10 9 13 13 C 1.41437 * 120.17923 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99845 * 334.92899 * 13 12 11 15 15 C 1.39936 * 120.00340 * 154.93332 * 13 12 11 16 16 N 1.30823 * 119.99598 * 342.58086 * 15 13 12 17 17 Si 1.86795 * 120.00306 * 162.58558 * 15 13 12 18 18 H 1.48494 * 109.47345 * 89.99634 * 17 15 13 19 19 H 1.48501 * 109.47433 * 209.99919 * 17 15 13 20 20 H 1.48504 * 109.47118 * 329.99571 * 17 15 13 21 21 C 1.38993 * 120.02928 * 179.72332 * 8 6 5 22 22 C 1.53007 * 109.46915 * 184.99920 * 3 2 1 23 23 H 1.08999 * 109.47033 * 65.00188 * 22 3 2 24 24 O 1.42897 * 109.47122 * 305.00328 * 22 3 2 25 25 C 1.52997 * 109.46869 * 185.00110 * 22 3 2 26 26 F 1.39894 * 109.47402 * 60.00082 * 25 22 3 27 27 F 1.39901 * 109.46958 * 180.02562 * 25 22 3 28 28 F 1.39903 * 109.47121 * 299.99983 * 25 22 3 29 29 H 1.08993 * 109.47448 * 59.99732 * 1 2 3 30 30 H 1.09001 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99786 * 1 2 3 32 32 H 1.08998 * 109.47340 * 240.00087 * 2 1 3 33 33 H 1.09001 * 109.47616 * 119.99943 * 2 1 3 34 34 H 0.97005 * 120.00200 * 94.99634 * 5 3 2 35 35 H 1.08006 * 119.82294 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.79624 * 180.26411 * 10 9 8 37 37 H 1.08003 * 119.98315 * 179.74613 * 11 10 9 38 38 H 0.97002 * 120.00192 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.20203 * 359.97438 * 21 8 6 40 40 H 0.96705 * 114.00023 * 299.99521 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6643 1.3670 7 8 -0.3411 2.6326 0.4321 8 6 0.0461 3.3308 2.6286 9 6 0.9371 3.3631 3.7069 10 6 0.5827 3.9897 4.8881 11 6 -0.6553 4.5789 5.0207 12 6 -1.5671 4.5514 3.9488 13 6 -2.8389 5.1560 4.0816 14 1 -3.2810 5.2747 5.0599 15 6 -3.5245 5.6002 2.9454 16 7 -2.8807 5.7764 1.8203 17 14 -5.3587 5.9418 3.0354 18 1 -5.5801 7.3593 3.4185 19 1 -5.9757 5.6853 1.7092 20 1 -5.9787 5.0522 4.0501 21 6 -1.2070 3.9206 2.7460 22 6 3.5648 1.4444 -0.1257 23 1 3.8498 1.0378 -1.0960 24 8 4.1292 0.6404 0.9121 25 6 4.0850 2.8777 -0.0006 26 9 3.7192 3.3996 1.2447 27 9 5.4793 2.8795 -0.1161 28 9 3.5324 3.6648 -1.0167 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2720 2.1231 1.9978 35 1 1.9085 2.8999 3.6151 36 1 1.2792 4.0129 5.7133 37 1 -0.9264 5.0627 5.9475 38 1 -3.3558 6.0847 1.0327 39 1 -1.8995 3.8946 1.9176 40 1 3.9162 0.9444 1.8050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270812448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:11 Heat of formation + Delta-G solvation = -222.757880 kcal Electronic energy + Delta-G solvation = -29701.823150 eV Core-core repulsion = 25066.183375 eV Total energy + Delta-G solvation = -4635.639775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.26870 -47.78247 -47.73939 -39.97481 -38.15175 -36.99067 -34.83263 -33.80236 -32.27687 -30.45066 -29.74396 -29.44599 -26.11325 -25.29278 -23.07926 -22.67055 -21.12651 -20.73323 -19.94492 -18.84571 -18.69212 -18.43349 -17.83863 -16.83733 -16.24735 -15.62692 -15.14405 -15.01656 -14.82913 -14.63040 -14.57637 -14.35464 -14.12783 -14.00709 -13.88833 -13.84670 -13.78862 -13.22349 -13.07362 -12.88086 -12.56514 -12.46117 -11.99672 -11.83612 -11.67456 -11.33502 -11.18200 -11.10460 -10.80104 -10.77846 -10.61693 -10.51857 -10.06829 -9.73226 -9.24376 -9.10607 -8.82071 -7.67616 -7.55383 -6.82983 -4.44597 2.14586 2.41904 2.78254 3.06005 3.08382 3.13945 3.16962 3.39192 3.62394 3.66880 3.78829 3.89745 4.07825 4.40171 4.59854 4.77867 4.95792 5.10477 5.35823 5.54657 5.56855 5.77232 5.86052 6.03040 6.05563 6.22208 6.25925 6.57631 6.63395 6.68022 6.80154 6.94384 6.96989 7.17390 7.34205 7.62440 7.69170 7.85877 7.97349 8.14128 8.46499 8.76418 8.79177 8.83703 10.11776 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003656 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.301229 B = 7656.417851 C = 8046.326207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.110 3.890 4 H 0.109 0.891 5 N -0.738 5.738 6 C 0.571 3.429 7 O -0.533 6.533 8 C -0.128 4.128 9 C -0.216 4.216 10 C -0.097 4.097 11 C -0.211 4.211 12 C 0.099 3.901 13 C -0.460 4.460 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.784 5.784 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.091 4.091 22 C 0.067 3.933 23 H 0.153 0.847 24 O -0.525 6.525 25 C 0.419 3.581 26 F -0.173 7.173 27 F -0.180 7.180 28 F -0.175 7.175 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.134 0.866 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.270 -8.675 -4.187 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.005 3.995 4 H 0.127 0.873 5 N -0.396 5.396 6 C 0.363 3.637 7 O -0.411 6.411 8 C -0.132 4.132 9 C -0.236 4.236 10 C -0.115 4.115 11 C -0.231 4.231 12 C 0.096 3.904 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.408 5.408 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.111 4.111 22 C 0.005 3.995 23 H 0.170 0.830 24 O -0.331 6.331 25 C 0.365 3.635 26 F -0.154 7.154 27 F -0.161 7.161 28 F -0.156 7.156 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 10.918 -8.903 -5.615 15.165 hybrid contribution -0.426 0.957 0.789 1.312 sum 10.492 -7.946 -4.825 14.018 Atomic orbital electron populations 1.21817 0.94032 1.00647 1.03926 1.21781 0.97566 0.93860 1.02650 1.21679 0.90648 0.96361 0.90861 0.87269 1.46164 1.18455 1.59685 1.15338 1.18759 0.80053 0.76426 0.88499 1.90715 1.51029 1.58839 1.40467 1.19415 0.97313 1.04185 0.92247 1.20304 0.98536 1.10019 0.94774 1.20433 0.96271 0.98714 0.96114 1.21109 0.94405 1.07443 1.00122 1.17593 0.92463 0.89528 0.90770 1.19586 1.01065 1.34061 0.94182 0.90088 1.25956 1.00690 0.93184 0.94705 1.69783 1.37876 1.31327 1.01788 0.86291 0.82007 0.79507 0.78872 1.19425 1.19944 1.18364 1.21628 0.94336 0.95730 0.99384 1.23636 0.94238 0.85324 0.96328 0.82994 1.86696 1.75804 1.52889 1.17701 1.21593 0.76013 0.91365 0.74572 1.93176 1.91077 1.88659 1.42513 1.93205 1.30232 1.97016 1.95677 1.93225 1.85217 1.77116 1.60049 0.92055 0.93502 0.91639 0.91185 0.91045 0.76465 0.89453 0.88901 0.88612 0.90423 0.84832 0.76514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.51 37.15 0.32 -1.74 16 2 C -0.12 -1.33 5.33 -26.73 -0.14 -1.47 16 3 C 0.11 1.33 1.98 -67.92 -0.13 1.19 16 4 H 0.11 1.50 7.38 -51.93 -0.38 1.11 16 5 N -0.74 -10.86 3.69 -54.73 -0.20 -11.06 16 6 C 0.57 11.48 6.34 -12.31 -0.08 11.40 16 7 O -0.53 -12.06 13.47 5.32 0.07 -11.99 16 8 C -0.13 -2.90 5.87 -105.04 -0.62 -3.52 16 9 C -0.22 -4.38 9.55 -38.92 -0.37 -4.75 16 10 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 11 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 12 C 0.10 2.57 5.57 -106.87 -0.59 1.97 16 13 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 14 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 15 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 16 N -0.78 -20.49 10.97 55.55 0.61 -19.88 16 17 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.09 -2.35 8.23 -38.44 -0.32 -2.66 16 22 C 0.07 0.63 2.95 -26.73 -0.08 0.55 16 23 H 0.15 1.07 8.14 -51.93 -0.42 0.65 16 24 O -0.53 -4.66 12.50 -35.23 -0.44 -5.11 16 25 C 0.42 4.91 2.83 37.16 0.11 5.01 16 26 F -0.17 -2.29 14.03 2.25 0.03 -2.25 16 27 F -0.18 -2.11 17.26 2.25 0.04 -2.07 16 28 F -0.17 -2.35 16.89 2.25 0.04 -2.31 16 29 H 0.06 0.92 7.84 -51.93 -0.41 0.52 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.12 5.65 -51.93 -0.29 0.83 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 34 H 0.40 5.13 3.89 -40.82 -0.16 4.97 16 35 H 0.09 1.45 6.38 -52.48 -0.33 1.11 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 38 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 39 H 0.13 3.74 5.76 -52.49 -0.30 3.44 16 40 H 0.39 2.72 7.45 45.56 0.34 3.06 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -29.36 339.68 -6.49 -35.85 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.60 Total: 12.43 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.12 Total: -12.24 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.41 Total: -30.94 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.37 Total: -17.09 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.11 Total: -6.63 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.36 -6.49 -35.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270812448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.907 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds