Wall clock time and date at job start Tue Mar 31 2020 16:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46952 * 55.89670 * 3 2 1 5 5 N 1.46496 * 109.47226 * 295.89495 * 3 2 1 6 6 C 1.34768 * 120.00205 * 84.99836 * 5 3 2 7 7 O 1.21544 * 120.00197 * 359.97438 * 6 5 3 8 8 C 1.47885 * 119.99917 * 179.97438 * 6 5 3 9 9 C 1.39919 * 120.02560 * 359.72899 * 8 6 5 10 10 C 1.38334 * 120.35636 * 179.71265 * 9 8 6 11 11 C 1.37753 * 120.41333 * 0.56423 * 10 9 8 12 12 C 1.40755 * 120.03923 * 359.71494 * 11 10 9 13 13 C 1.41437 * 120.17898 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99933 * 153.98517 * 13 12 11 15 15 C 1.39936 * 120.00009 * 333.98947 * 13 12 11 16 16 N 1.30826 * 120.00409 * 160.41988 * 15 13 12 17 17 Si 1.86803 * 119.99922 * 340.42324 * 15 13 12 18 18 H 1.48492 * 109.47590 * 93.08706 * 17 15 13 19 19 H 1.48503 * 109.46980 * 213.08871 * 17 15 13 20 20 H 1.48504 * 109.46846 * 333.08433 * 17 15 13 21 21 C 1.38999 * 120.02495 * 180.02562 * 8 6 5 22 22 C 1.53001 * 109.47278 * 175.89033 * 3 2 1 23 23 H 1.09009 * 109.46814 * 64.47207 * 22 3 2 24 24 O 1.42902 * 109.46895 * 304.48050 * 22 3 2 25 25 C 1.52993 * 109.47358 * 184.47700 * 22 3 2 26 26 F 1.39895 * 109.47274 * 54.33729 * 25 22 3 27 27 F 1.39902 * 109.47121 * 174.34188 * 25 22 3 28 28 F 1.39904 * 109.47050 * 294.33889 * 25 22 3 29 29 H 1.09001 * 109.46779 * 60.00035 * 1 2 3 30 30 H 1.08993 * 109.47054 * 300.00017 * 1 2 3 31 31 H 1.08996 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46956 * 120.00844 * 2 1 3 33 33 H 1.09007 * 109.47220 * 240.00178 * 2 1 3 34 34 H 0.97004 * 119.99492 * 264.99360 * 5 3 2 35 35 H 1.07995 * 119.82413 * 359.97438 * 9 8 6 36 36 H 1.07996 * 119.79556 * 180.25542 * 10 9 8 37 37 H 1.08001 * 119.98495 * 179.73876 * 11 10 9 38 38 H 0.96993 * 120.00365 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.20564 * 359.97438 * 21 8 6 40 40 H 0.96696 * 114.00253 * 299.99229 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6179 1.9771 0.8509 5 7 1.6342 2.1039 -1.2425 6 6 0.4154 2.6714 -1.3368 7 8 -0.3472 2.6340 -0.3911 8 6 0.0060 3.3396 -2.5909 9 6 0.8856 3.3880 -3.6779 10 6 0.5075 4.0061 -4.8563 11 6 -0.7345 4.5912 -4.9695 12 6 -1.6307 4.5576 -3.8847 13 6 -2.9068 5.1569 -3.9979 14 1 -3.7261 4.8012 -3.3908 15 6 -3.1078 6.2105 -4.8965 16 7 -4.3182 6.5124 -5.2907 17 14 -1.6477 7.1862 -5.5334 18 1 -1.1803 6.5983 -6.8144 19 1 -2.0541 8.5972 -5.7555 20 1 -0.5480 7.1389 -4.5366 21 6 -1.2507 3.9255 -2.6886 22 6 3.5666 1.4437 0.1034 23 1 3.9914 0.9790 -0.7865 24 8 3.9661 0.7081 1.2615 25 6 4.0690 2.8844 0.2158 26 9 3.4255 3.5208 1.2825 27 9 5.4500 2.8805 0.4396 28 9 3.7910 3.5692 -0.9721 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.2427 2.1335 -1.9973 35 1 1.8635 2.9367 -3.5981 36 1 1.1921 4.0346 -5.6911 37 1 -1.0210 5.0756 -5.8913 38 1 -4.4575 7.2429 -5.9133 39 1 -1.9313 3.8945 -1.8506 40 1 3.6237 1.0657 2.0921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270812452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:17 Heat of formation + Delta-G solvation = -246.393453 kcal Electronic energy + Delta-G solvation = -29294.930739 eV Core-core repulsion = 24658.266049 eV Total energy + Delta-G solvation = -4636.664690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.19509 -48.72821 -48.66890 -41.36055 -39.51701 -38.67791 -36.23850 -35.61658 -33.62681 -32.26715 -31.70944 -30.84131 -27.41534 -26.86665 -24.78158 -23.70693 -22.57437 -22.20507 -21.65325 -19.93651 -19.67650 -19.46388 -19.28605 -18.17688 -17.75521 -17.52452 -16.58842 -16.53793 -16.38189 -15.81672 -15.53013 -15.51138 -15.40718 -15.13915 -15.09147 -14.82830 -14.80248 -14.66361 -14.58810 -14.48052 -14.33763 -13.81983 -13.74835 -13.33166 -12.96545 -12.86785 -12.71076 -12.66011 -12.35729 -12.24295 -11.89852 -11.73697 -11.55486 -11.50244 -11.16982 -10.79505 -10.17040 -9.64421 -9.57720 -8.95105 -6.55858 0.19299 0.75000 1.23960 1.41159 1.47160 1.55069 1.93314 1.96235 2.11037 2.57169 2.63879 2.65096 2.85968 3.30024 3.46845 3.50228 3.82876 3.88480 3.98173 4.25518 4.26445 4.40446 4.46018 4.55907 4.67590 4.88814 4.89317 4.92246 5.03517 5.13262 5.15194 5.39338 5.42208 5.48390 5.65428 5.72219 5.84143 6.09292 6.24494 6.28709 6.50340 6.65672 6.72863 7.21910 8.13642 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.003437 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.996276 B = 8145.786447 C = 8940.479322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.110 3.890 4 H 0.088 0.912 5 N -0.710 5.710 6 C 0.571 3.429 7 O -0.566 6.566 8 C -0.111 4.111 9 C -0.187 4.187 10 C -0.081 4.081 11 C -0.235 4.235 12 C 0.066 3.934 13 C -0.486 4.486 14 H 0.050 0.950 15 C 0.046 3.954 16 N -0.844 5.844 17 Si 0.971 3.029 18 H -0.246 1.246 19 H -0.278 1.278 20 H -0.254 1.254 21 C -0.168 4.168 22 C 0.087 3.913 23 H 0.173 0.827 24 O -0.519 6.519 25 C 0.413 3.587 26 F -0.191 7.191 27 F -0.179 7.179 28 F -0.181 7.181 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.296 0.704 39 H 0.090 0.910 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.602 -10.767 7.457 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.005 3.995 4 H 0.106 0.894 5 N -0.366 5.366 6 C 0.360 3.640 7 O -0.445 6.445 8 C -0.114 4.114 9 C -0.206 4.206 10 C -0.098 4.098 11 C -0.254 4.254 12 C 0.064 3.936 13 C -0.515 4.515 14 H 0.069 0.931 15 C -0.169 4.169 16 N -0.470 5.470 17 Si 0.793 3.207 18 H -0.171 1.171 19 H -0.205 1.205 20 H -0.178 1.178 21 C -0.189 4.189 22 C 0.025 3.975 23 H 0.190 0.810 24 O -0.325 6.325 25 C 0.359 3.641 26 F -0.173 7.173 27 F -0.160 7.160 28 F -0.162 7.162 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.254 0.746 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 20.163 -11.006 7.625 24.204 hybrid contribution -0.652 1.507 -0.062 1.643 sum 19.512 -9.499 7.563 22.981 Atomic orbital electron populations 1.21761 0.96432 1.00871 1.01245 1.21808 0.95218 0.93366 1.04924 1.21814 0.92491 0.96372 0.88851 0.89404 1.45701 1.16551 1.57472 1.16860 1.18357 0.81484 0.77023 0.87093 1.90715 1.53317 1.60327 1.40190 1.19695 0.95666 1.01655 0.94412 1.20971 0.99805 1.06911 0.92918 1.21015 0.95031 0.95779 0.98022 1.21399 0.97396 1.08537 0.98114 1.17768 0.92527 0.91906 0.91426 1.19501 0.95452 1.16499 1.20064 0.93137 1.26913 0.99721 0.97281 0.92961 1.69723 1.24912 1.26529 1.25834 0.85461 0.78534 0.76442 0.80230 1.17117 1.20511 1.17770 1.21144 0.96316 1.04721 0.96713 1.23344 0.94081 0.85032 0.95062 0.80956 1.86718 1.75662 1.53589 1.16558 1.21999 0.75915 0.92376 0.73846 1.93186 1.81627 1.84894 1.57559 1.93211 1.31357 1.97025 1.94451 1.93207 1.93327 1.82486 1.47209 0.95089 0.93826 0.91985 0.87905 0.89726 0.74625 0.83532 0.83740 0.87658 0.89328 0.89211 0.74612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.50 71.98 0.61 -2.92 16 2 C -0.12 -1.86 5.49 30.59 0.17 -1.70 16 3 C 0.11 1.98 1.91 44.99 0.09 2.07 16 4 H 0.09 1.95 6.96 -2.39 -0.02 1.93 16 5 N -0.71 -16.52 3.89 -445.40 -1.73 -18.25 16 6 C 0.57 19.94 6.30 86.80 0.55 20.49 16 7 O -0.57 -23.33 13.46 -3.85 -0.05 -23.38 16 8 C -0.11 -4.44 5.87 -20.13 -0.12 -4.55 16 9 C -0.19 -6.20 9.55 22.70 0.22 -5.99 16 10 C -0.08 -2.89 10.01 22.18 0.22 -2.67 16 11 C -0.24 -10.51 7.24 22.77 0.16 -10.35 16 12 C 0.07 3.41 5.19 -21.32 -0.11 3.30 16 13 C -0.49 -27.87 9.58 23.47 0.22 -27.64 16 14 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 15 C 0.05 2.49 5.41 85.25 0.46 2.95 16 16 N -0.84 -46.39 13.93 21.82 0.30 -46.09 16 17 Si 0.97 41.79 24.47 68.60 1.68 43.47 16 18 H -0.25 -9.62 6.54 99.48 0.65 -8.97 16 19 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.25 -11.18 6.93 99.48 0.69 -10.49 16 21 C -0.17 -8.25 9.34 23.01 0.21 -8.04 16 22 C 0.09 1.07 2.70 30.59 0.08 1.15 16 23 H 0.17 1.24 8.14 -2.38 -0.02 1.23 16 24 O -0.52 -5.23 12.26 -148.98 -1.83 -7.06 16 25 C 0.41 7.23 2.86 71.98 0.21 7.44 16 26 F -0.19 -4.02 16.30 44.97 0.73 -3.29 16 27 F -0.18 -3.24 17.17 44.97 0.77 -2.47 16 28 F -0.18 -3.74 15.39 44.97 0.69 -3.04 16 29 H 0.03 0.95 5.67 -2.39 -0.01 0.93 16 30 H 0.04 1.19 7.79 -2.39 -0.02 1.17 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.24 7.44 -2.39 -0.02 1.22 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.41 7.52 5.82 -92.71 -0.54 6.98 16 35 H 0.15 3.39 6.38 -2.91 -0.02 3.37 16 36 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.11 4.64 4.23 -2.91 -0.01 4.63 16 38 H 0.30 14.47 8.30 -92.71 -0.77 13.71 16 39 H 0.09 4.71 7.64 -2.91 -0.02 4.69 16 40 H 0.40 2.06 8.86 -74.06 -0.66 1.40 16 Total: -1.00 -69.31 336.99 3.40 -65.90 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.14 Total: 20.67 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 2.98 Total: -26.46 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -1.43 Total: -64.33 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.88 Total: -30.44 kcal Atomic # 9 Polarization: -11.00 SS G_CDS: 2.20 Total: -8.81 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.47 kcal Total: -69.31 3.40 -65.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270812452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.491 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds