Wall clock time and date at job start Tue Mar 31 2020 16:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47006 * 305.00143 * 5 4 3 7 7 N 1.46495 * 109.46923 * 65.00014 * 5 4 3 8 8 S 1.65605 * 119.99911 * 214.99950 * 7 5 4 9 9 O 1.42106 * 104.27354 * 181.07491 * 8 7 5 10 10 O 1.42098 * 104.27592 * 308.92960 * 8 7 5 11 11 C 1.81393 * 104.44919 * 65.00438 * 8 7 5 12 12 C 1.53002 * 109.47274 * 180.02562 * 11 8 7 13 13 C 1.50699 * 109.47369 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99844 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00006 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47217 * 90.00210 * 17 15 13 19 19 H 1.48503 * 109.46934 * 210.00022 * 17 15 13 20 20 H 1.48497 * 109.47256 * 329.99912 * 17 15 13 21 21 C 1.50696 * 109.47212 * 185.00284 * 5 4 3 22 22 C 1.34515 * 125.79156 * 99.71816 * 21 5 4 23 23 C 1.41390 * 106.83950 * 179.88917 * 22 21 5 24 24 C 1.34512 * 106.84064 * 0.36794 * 23 22 21 25 25 C 1.50699 * 125.78638 * 179.74522 * 24 23 22 26 26 O 1.34303 * 108.42041 * 359.77787 * 24 23 22 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 33 33 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 34 34 H 0.97002 * 120.00228 * 35.00351 * 7 5 4 35 35 H 1.09009 * 109.47237 * 299.99923 * 11 8 7 36 36 H 1.09000 * 109.47581 * 59.99765 * 11 8 7 37 37 H 1.09001 * 109.47089 * 299.99451 * 12 11 8 38 38 H 1.09000 * 109.47131 * 59.99339 * 12 11 8 39 39 H 0.97003 * 119.99838 * 180.02562 * 16 15 13 40 40 H 1.08001 * 126.57692 * 0.02562 * 22 21 5 41 41 H 1.07997 * 126.57219 * 180.12222 * 23 22 21 42 42 H 1.09000 * 109.46829 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.47706 * 300.00888 * 25 24 23 44 44 H 1.09007 * 109.46661 * 60.00713 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7673 3.1535 -0.8423 7 7 3.8226 3.2667 1.2512 8 16 3.5541 4.9008 1.2551 9 8 3.2876 5.2088 2.6165 10 8 4.6860 5.4435 0.5892 11 6 2.0600 5.1163 0.2494 12 6 1.7048 6.6027 0.1756 13 6 0.4639 6.7819 -0.6604 14 1 -0.0226 5.9217 -1.0959 15 6 -0.0504 8.0440 -0.8692 16 7 0.5423 9.0916 -0.3393 17 14 -1.5883 8.2660 -1.9062 18 1 -2.7881 8.1918 -1.0344 19 1 -1.5455 9.5898 -2.5777 20 1 -1.6537 7.1931 -2.9307 21 6 5.6551 2.4656 -0.1233 22 6 6.3663 2.6255 -1.2538 23 6 7.7249 2.4314 -0.9140 24 6 7.7620 2.1563 0.4022 25 6 9.0029 1.8711 1.2083 26 8 6.5054 2.1783 0.8759 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.8567 0.6439 0.8908 33 1 3.8575 0.6436 -0.8892 34 1 3.7581 2.7626 2.0775 35 1 2.2407 4.7360 -0.7561 36 1 1.2346 4.5672 0.7025 37 1 1.5241 6.9834 1.1809 38 1 2.5303 7.1515 -0.2777 39 1 0.1802 9.9795 -0.4859 40 1 5.9747 2.8598 -2.2327 41 1 8.5703 2.4887 -1.5836 42 1 8.7268 1.6831 2.2459 43 1 9.5066 0.9941 0.8020 44 1 9.6727 2.7298 1.1601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272106189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:59 Heat of formation + Delta-G solvation = -119.443623 kcal Electronic energy + Delta-G solvation = -27019.429372 eV Core-core repulsion = 23065.570331 eV Total energy + Delta-G solvation = -3953.859041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.56945 -38.36849 -36.79711 -36.38642 -35.45997 -33.95263 -33.15096 -31.86502 -31.27484 -31.15940 -27.95073 -26.39569 -25.67131 -24.18323 -22.00637 -21.83315 -21.58124 -20.15721 -19.07627 -17.57777 -17.33123 -16.80556 -16.48231 -16.10619 -16.07300 -15.53934 -15.40402 -15.14915 -14.76892 -14.59321 -14.33506 -13.64740 -13.43431 -13.34895 -13.13104 -13.09145 -12.77182 -12.57099 -12.44406 -12.00827 -11.86364 -11.81503 -11.68809 -11.61594 -11.54035 -11.37064 -11.20219 -11.12089 -10.99666 -10.47927 -10.44112 -10.00572 -9.83114 -9.80553 -9.65899 -9.14449 -8.54329 -8.26977 -6.16297 -4.22341 0.68633 1.69810 2.59969 2.79953 3.09067 3.22874 3.29419 3.31544 3.53686 4.16946 4.33519 4.43830 4.58625 4.67581 4.76641 4.83751 4.92128 5.04228 5.08554 5.17759 5.19162 5.22586 5.28802 5.29269 5.29999 5.39217 5.52043 5.53706 5.55887 5.67146 5.78695 5.80074 5.86437 6.03954 6.12778 6.39699 6.55320 6.94240 6.96031 7.20459 7.25022 7.30948 7.75937 8.12318 8.80826 9.42650 10.94680 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.003801 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.675447 B = 7364.067252 C = 8884.998831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.055 3.945 4 C -0.121 4.121 5 C 0.244 3.756 6 H 0.116 0.884 7 N -1.121 6.121 8 S 2.584 3.416 9 O -0.963 6.963 10 O -0.956 6.956 11 C -0.591 4.591 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.019 4.019 22 C -0.193 4.193 23 C -0.210 4.210 24 C -0.018 4.018 25 C -0.072 4.072 26 O -0.164 6.164 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.417 0.583 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 -19.152 -0.073 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.312 6.312 3 C -0.022 4.022 4 C -0.160 4.160 5 C 0.135 3.865 6 H 0.134 0.866 7 N -0.876 5.876 8 S 2.682 3.318 9 O -0.953 6.953 10 O -0.946 6.946 11 C -0.725 4.725 12 C -0.010 4.010 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.071 4.071 22 C -0.213 4.213 23 C -0.229 4.229 24 C -0.069 4.069 25 C -0.129 4.129 26 O -0.060 6.060 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.251 0.749 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.705 -18.442 0.553 20.847 hybrid contribution -1.504 0.081 -0.829 1.720 sum 8.200 -18.361 -0.277 20.111 Atomic orbital electron populations 1.22770 0.80669 1.02668 1.00538 1.87823 1.19990 1.27815 1.95558 1.22588 0.93130 0.85022 1.01472 1.21818 0.93773 0.95306 1.05089 1.19095 0.84906 0.94716 0.87740 0.86615 1.56064 1.87042 1.29332 1.15194 1.05902 0.77844 0.72173 0.75893 1.93564 1.86925 1.81740 1.33095 1.93579 1.47737 1.76237 1.77029 1.30503 1.17606 1.10977 1.13376 1.18961 0.98968 0.83751 0.99336 1.20972 1.10025 0.92958 1.32096 0.92042 1.25068 0.97557 0.95925 0.95909 1.69954 1.39944 0.98767 1.44033 0.86474 0.82865 0.77690 0.80277 1.20467 1.20977 1.19753 1.22552 0.92462 1.05739 0.86364 1.21549 0.93189 1.07234 0.99280 1.21495 0.97620 1.08593 0.95235 1.22431 0.84586 1.05746 0.94096 1.20281 0.90474 1.02768 0.99362 1.83926 1.15671 1.69062 1.37348 0.93734 0.89703 0.93756 0.92407 0.92338 0.89751 0.89128 0.74917 0.86355 0.86007 0.94802 0.94731 0.92478 0.83244 0.83578 0.90709 0.89871 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.37 10.70 -35.23 -0.38 -4.75 16 3 C 0.05 0.55 5.83 37.16 0.22 0.77 16 4 C -0.12 -1.18 5.16 -26.73 -0.14 -1.32 16 5 C 0.24 2.87 2.52 -69.09 -0.17 2.69 16 6 H 0.12 1.22 7.14 -51.93 -0.37 0.85 16 7 N -1.12 -14.66 4.79 -5.89 -0.03 -14.69 16 8 S 2.58 45.92 5.38 -107.50 -0.58 45.34 16 9 O -0.96 -20.00 18.08 -57.54 -1.04 -21.04 16 10 O -0.96 -20.04 17.77 -57.54 -1.02 -21.06 16 11 C -0.59 -10.72 5.90 37.16 0.22 -10.50 16 12 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 13 C -0.52 -13.99 9.11 -34.44 -0.31 -14.31 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.02 -0.26 6.12 -35.63 -0.22 -0.48 16 22 C -0.19 -2.50 10.80 -39.70 -0.43 -2.93 16 23 C -0.21 -2.57 10.81 -39.70 -0.43 -3.00 16 24 C -0.02 -0.22 7.32 -35.63 -0.26 -0.49 16 25 C -0.07 -0.59 10.42 36.00 0.38 -0.21 16 26 O -0.16 -2.33 10.64 5.70 0.06 -2.27 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.42 4.65 8.80 -34.47 -0.30 4.35 16 35 H 0.12 1.84 7.44 -51.92 -0.39 1.46 16 36 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -36.64 387.96 -8.62 -45.26 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.92 Total: 3.23 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -0.28 Total: -26.29 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.71 Total: -40.05 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -2.38 Total: -49.11 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 45.92 SS G_CDS: -0.58 Total: 45.34 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.64 -8.62 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272106189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.183 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds