Wall clock time and date at job start Tue Mar 31 2020 16:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47006 * 305.00143 * 5 4 3 7 7 N 1.46495 * 109.46923 * 65.00014 * 5 4 3 8 8 S 1.65605 * 119.99911 * 214.99950 * 7 5 4 9 9 O 1.42106 * 104.27354 * 181.07491 * 8 7 5 10 10 O 1.42098 * 104.27592 * 308.92960 * 8 7 5 11 11 C 1.81393 * 104.44919 * 65.00438 * 8 7 5 12 12 C 1.53002 * 109.47274 * 180.02562 * 11 8 7 13 13 C 1.50699 * 109.47369 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99844 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00006 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47217 * 90.00210 * 17 15 13 19 19 H 1.48503 * 109.46934 * 210.00022 * 17 15 13 20 20 H 1.48497 * 109.47256 * 329.99912 * 17 15 13 21 21 C 1.50696 * 109.47212 * 185.00284 * 5 4 3 22 22 C 1.34515 * 125.79156 * 99.71816 * 21 5 4 23 23 C 1.41390 * 106.83950 * 179.88917 * 22 21 5 24 24 C 1.34512 * 106.84064 * 0.36794 * 23 22 21 25 25 C 1.50699 * 125.78638 * 179.74522 * 24 23 22 26 26 O 1.34303 * 108.42041 * 359.77787 * 24 23 22 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 33 33 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 34 34 H 0.97002 * 120.00228 * 35.00351 * 7 5 4 35 35 H 1.09009 * 109.47237 * 299.99923 * 11 8 7 36 36 H 1.09000 * 109.47581 * 59.99765 * 11 8 7 37 37 H 1.09001 * 109.47089 * 299.99451 * 12 11 8 38 38 H 1.09000 * 109.47131 * 59.99339 * 12 11 8 39 39 H 0.97003 * 119.99838 * 180.02562 * 16 15 13 40 40 H 1.08001 * 126.57692 * 0.02562 * 22 21 5 41 41 H 1.07997 * 126.57219 * 180.12222 * 23 22 21 42 42 H 1.09000 * 109.46829 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.47706 * 300.00888 * 25 24 23 44 44 H 1.09007 * 109.46661 * 60.00713 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7673 3.1535 -0.8423 7 7 3.8226 3.2667 1.2512 8 16 3.5541 4.9008 1.2551 9 8 3.2876 5.2088 2.6165 10 8 4.6860 5.4435 0.5892 11 6 2.0600 5.1163 0.2494 12 6 1.7048 6.6027 0.1756 13 6 0.4639 6.7819 -0.6604 14 1 -0.0226 5.9217 -1.0959 15 6 -0.0504 8.0440 -0.8692 16 7 0.5423 9.0916 -0.3393 17 14 -1.5883 8.2660 -1.9062 18 1 -2.7881 8.1918 -1.0344 19 1 -1.5455 9.5898 -2.5777 20 1 -1.6537 7.1931 -2.9307 21 6 5.6551 2.4656 -0.1233 22 6 6.3663 2.6255 -1.2538 23 6 7.7249 2.4314 -0.9140 24 6 7.7620 2.1563 0.4022 25 6 9.0029 1.8711 1.2083 26 8 6.5054 2.1783 0.8759 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.8567 0.6439 0.8908 33 1 3.8575 0.6436 -0.8892 34 1 3.7581 2.7626 2.0775 35 1 2.2407 4.7360 -0.7561 36 1 1.2346 4.5672 0.7025 37 1 1.5241 6.9834 1.1809 38 1 2.5303 7.1515 -0.2777 39 1 0.1802 9.9795 -0.4859 40 1 5.9747 2.8598 -2.2327 41 1 8.5703 2.4887 -1.5836 42 1 8.7268 1.6831 2.2459 43 1 9.5066 0.9941 0.8020 44 1 9.6727 2.7298 1.1601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272106189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:53 Heat of formation + Delta-G solvation = -146.724237 kcal Electronic energy + Delta-G solvation = -27020.612348 eV Core-core repulsion = 23065.570331 eV Total energy + Delta-G solvation = -3955.042017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -43.51055 -39.17759 -38.22700 -37.46711 -37.02656 -35.89708 -34.07569 -33.14098 -32.74678 -32.07591 -28.76377 -27.60905 -27.10575 -25.01738 -23.66452 -22.72768 -22.69598 -21.11388 -20.42454 -19.15945 -18.45631 -18.15904 -17.65325 -17.08478 -16.98837 -16.90546 -16.64517 -16.51411 -16.02078 -15.86116 -15.25609 -15.03800 -14.57483 -14.44892 -14.10559 -13.90635 -13.78102 -13.73384 -13.69360 -13.35449 -13.23563 -13.13330 -12.95757 -12.87025 -12.78917 -12.69467 -12.56059 -12.27156 -12.16169 -12.13972 -11.97817 -11.75080 -11.28856 -10.76764 -10.71652 -10.63427 -10.54428 -9.18867 -8.24767 -6.38565 -0.77239 0.75104 1.42489 1.43839 1.54748 1.61066 1.78603 2.01310 2.38858 2.73359 2.80506 3.09287 3.20853 3.60002 3.75126 3.88543 3.95794 4.05424 4.07478 4.15997 4.20025 4.30670 4.42804 4.55245 4.57341 4.61662 4.62623 4.73222 4.75515 4.87926 4.90795 4.91967 5.00089 5.07343 5.16153 5.27059 5.28554 5.29209 5.67615 5.69531 5.95578 6.06393 6.23107 6.26082 6.75495 7.31785 8.87546 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.003801 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.675447 B = 7364.067252 C = 8884.998831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.410 6.410 3 C 0.048 3.952 4 C -0.109 4.109 5 C 0.239 3.761 6 H 0.130 0.870 7 N -1.103 6.103 8 S 2.608 3.392 9 O -0.997 6.997 10 O -0.991 6.991 11 C -0.584 4.584 12 C 0.021 3.979 13 C -0.535 4.535 14 H 0.081 0.919 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.042 4.042 22 C -0.206 4.206 23 C -0.225 4.225 24 C -0.032 4.032 25 C -0.072 4.072 26 O -0.183 6.183 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.428 0.572 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.005 0.995 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -21.221 -1.275 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C -0.028 4.028 4 C -0.148 4.148 5 C 0.132 3.868 6 H 0.147 0.853 7 N -0.863 5.863 8 S 2.705 3.295 9 O -0.988 6.988 10 O -0.980 6.980 11 C -0.717 4.717 12 C -0.018 4.018 13 C -0.574 4.574 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.178 1.178 21 C -0.094 4.094 22 C -0.226 4.226 23 C -0.244 4.244 24 C -0.082 4.082 25 C -0.128 4.128 26 O -0.080 6.080 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.264 0.736 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.183 0.817 41 H 0.185 0.815 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.083 -20.533 -0.643 22.461 hybrid contribution -1.228 0.658 -0.445 1.463 sum 7.855 -19.875 -1.088 21.398 Atomic orbital electron populations 1.22934 0.79654 1.03809 1.00870 1.87794 1.21182 1.28278 1.95670 1.22685 0.93127 0.84984 1.02042 1.21702 0.93580 0.93856 1.05619 1.19392 0.84479 0.95871 0.87086 0.85272 1.55551 1.86553 1.27526 1.16636 1.04917 0.77051 0.72922 0.74595 1.93510 1.87204 1.83071 1.34968 1.93534 1.49193 1.77844 1.77474 1.30349 1.18803 1.06747 1.15821 1.18818 0.97861 0.87917 0.97228 1.21508 1.10449 0.93645 1.31763 0.90132 1.26112 1.01137 0.95744 0.97294 1.70109 1.42044 0.99367 1.45962 0.85336 0.78477 0.77852 0.78744 1.19742 1.21172 1.17835 1.22873 0.93178 1.06669 0.86636 1.21934 0.93792 1.06899 0.99955 1.21867 0.98097 1.08704 0.95756 1.23258 0.84987 1.04996 0.94921 1.20469 0.89020 1.04226 0.99122 1.83913 1.16564 1.69511 1.38031 0.93282 0.88317 0.93509 0.91501 0.92133 0.89764 0.88073 0.73573 0.83287 0.83246 0.97688 0.97476 0.92486 0.81747 0.81497 0.90449 0.87491 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.23 10.70 -148.98 -1.59 -9.82 16 3 C 0.05 0.86 5.83 71.98 0.42 1.28 16 4 C -0.11 -1.89 5.16 30.59 0.16 -1.73 16 5 C 0.24 5.24 2.52 44.25 0.11 5.35 16 6 H 0.13 2.43 7.14 -2.39 -0.02 2.42 16 7 N -1.10 -27.56 4.79 -172.53 -0.83 -28.39 16 8 S 2.61 92.22 5.38 -56.49 -0.30 91.91 16 9 O -1.00 -41.92 18.08 -127.65 -2.31 -44.23 16 10 O -0.99 -41.98 17.77 -127.65 -2.27 -44.25 16 11 C -0.58 -20.49 5.90 71.98 0.42 -20.06 16 12 C 0.02 1.05 4.98 29.85 0.15 1.20 16 13 C -0.53 -28.43 9.11 25.60 0.23 -28.20 16 14 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -56.15 13.29 21.45 0.28 -55.87 16 17 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 21 C -0.04 -1.10 6.12 24.83 0.15 -0.94 16 22 C -0.21 -5.13 10.80 22.19 0.24 -4.89 16 23 C -0.23 -5.24 10.81 22.19 0.24 -5.00 16 24 C -0.03 -0.75 7.32 24.83 0.18 -0.57 16 25 C -0.07 -1.06 10.42 71.24 0.74 -0.31 16 26 O -0.18 -5.09 10.64 -2.51 -0.03 -5.12 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.04 7.75 -2.39 -0.02 1.02 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.43 9.04 8.80 -96.74 -0.85 8.19 16 35 H 0.15 4.27 7.44 -2.39 -0.02 4.25 16 36 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 37 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -80.32 387.96 -0.11 -80.43 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.14 Total: 23.26 kcal Atomic # 6 Polarization: -56.83 SS G_CDS: 4.76 Total: -52.07 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -0.54 Total: -84.26 kcal Atomic # 8 Polarization: -97.23 SS G_CDS: -6.20 Total: -103.43 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 92.22 SS G_CDS: -0.30 Total: 91.91 kcal Total: -80.32 -0.11 -80.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272106189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.295 kcal (2) G-P(sol) polarization free energy of solvation -80.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.88 seconds