Wall clock time and date at job start Tue Mar 31 2020 16:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 N 1.46497 * 109.47408 * 295.00294 * 5 4 3 8 8 S 1.65602 * 120.00502 * 144.99698 * 7 5 4 9 9 O 1.42101 * 104.27887 * 181.07228 * 8 7 5 10 10 O 1.42099 * 104.27610 * 308.93044 * 8 7 5 11 11 C 1.81400 * 104.44802 * 65.00125 * 8 7 5 12 12 C 1.52995 * 109.47028 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47380 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99861 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00427 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00307 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99736 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47037 * 90.00527 * 17 15 13 19 19 H 1.48506 * 109.47132 * 210.00217 * 17 15 13 20 20 H 1.48501 * 109.47269 * 330.00304 * 17 15 13 21 21 C 1.50699 * 109.47482 * 174.99860 * 5 4 3 22 22 C 1.34514 * 125.79049 * 260.00038 * 21 5 4 23 23 C 1.41387 * 106.84079 * 180.02562 * 22 21 5 24 24 C 1.34516 * 106.83751 * 359.97438 * 23 22 21 25 25 C 1.50706 * 125.78511 * 180.02562 * 24 23 22 26 26 O 1.34299 * 108.42362 * 359.74039 * 24 23 22 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 31 31 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 34 34 H 0.96999 * 119.99953 * 324.99559 * 7 5 4 35 35 H 1.09003 * 109.47024 * 299.99956 * 11 8 7 36 36 H 1.08998 * 109.47428 * 60.00031 * 11 8 7 37 37 H 1.09001 * 109.47247 * 299.99894 * 12 11 8 38 38 H 1.09006 * 109.47638 * 59.99604 * 12 11 8 39 39 H 0.97010 * 120.00215 * 179.97438 * 16 15 13 40 40 H 1.07995 * 126.58462 * 359.96737 * 22 21 5 41 41 H 1.07992 * 126.58268 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47413 * 90.00527 * 25 24 23 43 43 H 1.09003 * 109.46961 * 210.00232 * 25 24 23 44 44 H 1.09004 * 109.47007 * 329.99641 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7675 3.1534 0.8424 7 7 3.8228 3.2666 -1.2512 8 16 3.5543 4.9008 -1.2550 9 8 3.2376 5.2007 -2.6075 10 8 2.6038 5.1021 -0.2181 11 6 5.1548 5.6235 -0.8006 12 6 5.0352 7.1484 -0.7688 13 6 6.3650 7.7489 -0.3920 14 1 7.2108 7.1070 -0.1944 15 6 6.5020 9.1177 -0.2993 16 7 7.6626 9.6417 0.0291 17 14 5.0392 10.2280 -0.6417 18 1 4.2930 10.4666 0.6198 19 1 5.5182 11.5239 -1.1862 20 1 4.1437 9.5761 -1.6308 21 6 5.6552 2.4654 0.1232 22 6 6.3669 2.6306 1.2527 23 6 7.7251 2.4323 0.9137 24 6 7.7621 2.1572 -0.4025 25 6 9.0031 1.8730 -1.2089 26 8 6.5050 2.1726 -0.8748 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.8575 0.6435 0.8891 33 1 3.8568 0.6439 -0.8908 34 1 3.7582 2.7627 -2.0774 35 1 5.4502 5.2619 0.1843 36 1 5.9063 5.3328 -1.5347 37 1 4.7396 7.5103 -1.7536 38 1 4.2838 7.4388 -0.0345 39 1 7.7590 10.6048 0.0939 40 1 5.9760 2.8698 2.2306 41 1 8.5706 2.4897 1.5832 42 1 9.2071 0.8023 -1.1966 43 1 8.8517 2.2022 -2.2369 44 1 9.8481 2.4089 -0.7765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272106191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:12 Heat of formation + Delta-G solvation = -115.710156 kcal Electronic energy + Delta-G solvation = -27250.408502 eV Core-core repulsion = 23296.711357 eV Total energy + Delta-G solvation = -3953.697146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -42.59788 -38.40730 -36.92577 -36.46053 -35.63948 -33.95900 -33.15161 -31.85904 -31.48799 -31.26242 -27.96181 -26.47110 -25.94278 -24.18976 -21.93316 -21.81307 -21.29251 -20.13613 -19.19388 -17.74325 -17.34604 -17.01603 -16.71109 -16.15403 -16.10940 -15.56077 -15.52554 -15.22022 -14.81859 -14.37391 -14.24795 -13.70220 -13.63409 -13.33669 -13.07956 -13.06434 -12.80192 -12.77673 -12.45349 -12.02456 -11.91192 -11.84018 -11.80839 -11.77908 -11.69762 -11.39453 -11.27825 -11.24347 -11.21503 -10.46443 -10.25176 -10.00891 -9.86517 -9.81696 -9.54790 -9.26540 -8.66193 -8.30060 -6.16199 -4.17117 0.59450 1.65089 2.57949 2.80147 2.95219 3.25859 3.33291 3.37387 3.49411 4.03856 4.35656 4.40386 4.53246 4.64296 4.74508 4.84137 4.92995 5.01114 5.08197 5.11736 5.15426 5.22975 5.25779 5.31426 5.36473 5.40295 5.42947 5.53323 5.60983 5.63601 5.76805 5.78512 5.86904 6.04036 6.12043 6.28291 6.54351 6.81325 6.86662 6.90611 6.94891 7.18518 7.54783 8.37552 8.85744 9.43457 10.96226 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.004386 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.000558 B = 6382.827704 C = 8353.625995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.058 3.942 4 C -0.117 4.117 5 C 0.240 3.760 6 H 0.125 0.875 7 N -1.118 6.118 8 S 2.584 3.416 9 O -0.963 6.963 10 O -0.965 6.965 11 C -0.577 4.577 12 C -0.006 4.006 13 C -0.517 4.517 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.868 3.132 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.043 4.043 22 C -0.187 4.187 23 C -0.208 4.208 24 C -0.009 4.009 25 C -0.074 4.074 26 O -0.163 6.163 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -20.555 0.579 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.019 4.019 4 C -0.156 4.156 5 C 0.131 3.869 6 H 0.143 0.857 7 N -0.874 5.874 8 S 2.682 3.318 9 O -0.953 6.953 10 O -0.955 6.955 11 C -0.711 4.711 12 C -0.045 4.045 13 C -0.556 4.556 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.694 3.306 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.095 4.095 22 C -0.207 4.207 23 C -0.227 4.227 24 C -0.059 4.059 25 C -0.131 4.131 26 O -0.059 6.059 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.252 0.748 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.326 -20.110 0.255 21.083 hybrid contribution -0.010 0.707 -0.052 0.709 sum -6.336 -19.403 0.204 20.413 Atomic orbital electron populations 1.22746 0.80865 1.02614 1.00301 1.87824 1.19853 1.28040 1.95546 1.22544 0.93227 0.84613 1.01484 1.21743 0.93677 0.95129 1.05005 1.19183 0.84407 0.95186 0.88097 0.85743 1.55932 1.88096 1.27901 1.15435 1.05802 0.78538 0.72839 0.74602 1.93569 1.84027 1.82509 1.35228 1.93550 1.58481 1.84124 1.59303 1.30269 1.19071 1.10023 1.11704 1.19409 1.00497 0.86511 0.98078 1.20829 0.94634 0.92230 1.47862 0.90406 1.24973 0.95815 0.98014 0.94253 1.69880 1.23583 1.12117 1.47780 0.86946 0.83411 0.80602 0.79613 1.19661 1.20747 1.18651 1.22715 0.92562 1.07422 0.86817 1.21628 0.93321 1.06576 0.99216 1.21555 0.97678 1.08261 0.95250 1.22494 0.84467 1.04897 0.94073 1.20318 0.90511 1.02550 0.99714 1.83935 1.15647 1.69008 1.37334 0.93955 0.89685 0.93886 0.92551 0.92407 0.89128 0.89836 0.74798 0.85693 0.85553 0.95009 0.95398 0.92407 0.83090 0.83397 0.90302 0.90436 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.26 10.70 -35.23 -0.38 -4.64 16 3 C 0.06 0.60 5.83 37.16 0.22 0.81 16 4 C -0.12 -1.13 5.16 -26.74 -0.14 -1.27 16 5 C 0.24 2.71 2.66 -69.09 -0.18 2.53 16 6 H 0.12 1.34 7.47 -51.93 -0.39 0.95 16 7 N -1.12 -14.00 4.79 -5.89 -0.03 -14.03 16 8 S 2.58 43.69 5.44 -107.50 -0.58 43.10 16 9 O -0.96 -18.90 18.08 -57.54 -1.04 -19.94 16 10 O -0.96 -18.00 17.39 -57.54 -1.00 -19.01 16 11 C -0.58 -10.91 5.66 37.16 0.21 -10.70 16 12 C -0.01 -0.13 4.05 -27.89 -0.11 -0.25 16 13 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 14 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 17 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 21 C -0.04 -0.54 5.42 -35.63 -0.19 -0.74 16 22 C -0.19 -2.34 10.80 -39.70 -0.43 -2.77 16 23 C -0.21 -2.60 10.81 -39.70 -0.43 -3.02 16 24 C -0.01 -0.11 7.32 -35.62 -0.26 -0.37 16 25 C -0.07 -0.67 10.42 36.01 0.38 -0.29 16 26 O -0.16 -2.17 10.65 5.71 0.06 -2.11 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.42 4.44 8.80 -34.47 -0.30 4.14 16 35 H 0.12 2.21 7.75 -51.92 -0.40 1.80 16 36 H 0.13 2.29 8.14 -51.93 -0.42 1.86 16 37 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 38 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 40 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -35.60 383.86 -8.26 -43.86 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.92 Total: 3.98 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -0.26 Total: -27.52 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.75 Total: -40.32 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.36 Total: -45.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 43.69 SS G_CDS: -0.58 Total: 43.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.60 -8.26 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272106191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.849 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds