Wall clock time and date at job start Tue Mar 31 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47373 * 2 1 4 4 C 1.37093 * 119.99753 * 269.70392 * 3 2 1 5 5 H 1.08000 * 120.00096 * 137.62859 * 4 3 2 6 6 C 1.38949 * 119.99960 * 317.63300 * 4 3 2 7 7 N 1.31410 * 120.00122 * 340.57163 * 6 4 3 8 8 Si 1.86802 * 120.00000 * 160.57539 * 6 4 3 9 9 H 1.48495 * 109.47279 * 59.99719 * 8 6 4 10 10 H 1.48503 * 109.47286 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47025 * 299.99876 * 8 6 4 12 12 C 1.34774 * 119.99894 * 89.69506 * 3 2 1 13 13 O 1.21291 * 119.99507 * 185.14725 * 12 3 2 14 14 C 1.50697 * 120.00122 * 5.15774 * 12 3 2 15 15 H 1.09001 * 109.47208 * 313.25216 * 14 12 3 16 16 O 1.42905 * 109.46806 * 193.25232 * 14 12 3 17 17 C 1.52996 * 109.47482 * 73.25541 * 14 12 3 18 18 C 1.50701 * 109.47388 * 184.28926 * 17 14 12 19 19 C 1.38258 * 119.99795 * 269.97833 * 18 17 14 20 20 C 1.38213 * 119.99836 * 179.97438 * 19 18 17 21 21 C 1.38260 * 119.99848 * 359.73836 * 20 19 18 22 22 C 1.38213 * 119.99874 * 0.53989 * 21 20 19 23 23 C 1.50697 * 119.99703 * 179.73919 * 22 21 20 24 24 F 1.39899 * 109.47124 * 269.72146 * 23 22 21 25 25 F 1.39898 * 109.47737 * 29.72270 * 23 22 21 26 26 F 1.39900 * 109.47076 * 149.72199 * 23 22 21 27 27 C 1.38212 * 120.00102 * 89.99427 * 18 17 14 28 28 H 1.08997 * 109.47374 * 299.99896 * 1 2 3 29 29 H 1.09001 * 109.47263 * 60.00064 * 1 2 3 30 30 H 1.09007 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47248 * 239.99564 * 2 1 3 32 32 H 1.09001 * 109.47263 * 119.99936 * 2 1 3 33 33 H 0.97001 * 120.00242 * 179.97438 * 7 6 4 34 34 H 0.96697 * 114.00080 * 299.99939 * 16 14 12 35 35 H 1.08995 * 109.47264 * 64.28725 * 17 14 12 36 36 H 1.09002 * 109.46646 * 304.28628 * 17 14 12 37 37 H 1.07995 * 120.00360 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.99761 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99824 * 180.27261 * 21 20 19 40 40 H 1.08001 * 119.99838 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2526 2.0254 -1.1873 5 1 1.9485 3.0540 -1.3127 6 6 2.8813 1.3548 -2.2292 7 7 3.5839 0.2716 -1.9844 8 14 2.7279 1.9931 -3.9781 9 1 3.2796 3.3697 -4.0528 10 1 3.4856 1.1061 -4.8971 11 1 1.2969 2.0111 -4.3747 12 6 2.2371 2.0186 1.1672 13 8 2.5514 3.1901 1.1687 14 6 2.0915 1.2757 2.4702 15 1 1.1628 0.7053 2.4614 16 8 2.0664 2.2103 3.5510 17 6 3.2743 0.3217 2.6484 18 6 3.0759 -0.4965 3.8983 19 6 3.5617 -0.0383 5.1088 20 6 3.3793 -0.7886 6.2552 21 6 2.7062 -1.9946 6.1923 22 6 2.2256 -2.4554 4.9811 23 6 1.4971 -3.7727 4.9115 24 9 2.4142 -4.8003 4.6661 25 9 0.8451 -4.0099 6.1263 26 9 0.5558 -3.7310 3.8774 27 6 2.4085 -1.7052 3.8343 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0225 -0.1968 -2.7119 34 1 2.8634 2.7536 3.6198 35 1 4.1959 0.8975 2.7336 36 1 3.3388 -0.3419 1.7861 37 1 4.0838 0.9057 5.1588 38 1 3.7592 -0.4308 7.2008 39 1 2.5598 -2.5788 7.0888 40 1 2.0289 -2.0630 2.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275111940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:19 Heat of formation + Delta-G solvation = -211.982834 kcal Electronic energy + Delta-G solvation = -29132.292149 eV Core-core repulsion = 24497.119615 eV Total energy + Delta-G solvation = -4635.172534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.24266 -47.76170 -47.70110 -39.92002 -38.83519 -36.23100 -34.95928 -33.09323 -32.14329 -31.79635 -29.53031 -28.93537 -26.15137 -25.49767 -23.85727 -22.55512 -22.10650 -21.15612 -19.46461 -18.57502 -18.46087 -18.15813 -17.01778 -16.50467 -16.38249 -15.99157 -15.35052 -15.08463 -14.69368 -14.64355 -14.49491 -14.39439 -14.16181 -13.96345 -13.86387 -13.78612 -13.62569 -13.18018 -13.03576 -12.93892 -12.71740 -12.69546 -11.92274 -11.78880 -11.72652 -11.42284 -11.34395 -11.20434 -11.06450 -10.83138 -10.46920 -10.41589 -10.32630 -10.09664 -9.29409 -9.00049 -8.95998 -8.29320 -7.49478 -6.40160 -4.09232 0.85833 1.14447 2.57100 3.15186 3.21915 3.25190 3.35906 3.62322 3.74563 3.93428 4.09195 4.33798 4.57076 4.67491 4.72659 4.82179 4.92495 4.97841 5.15466 5.21369 5.34705 5.40291 5.55087 5.62910 5.76141 5.81192 5.97700 6.05150 6.09950 6.17265 6.21064 6.25928 6.42781 6.49404 6.68588 6.80536 7.10138 7.52149 7.91140 8.23700 8.42234 9.09501 9.29297 9.88785 10.64571 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003561 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.131030 B = 7861.574684 C = 8832.585234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.434 5.434 4 C -0.315 4.315 5 H 0.087 0.913 6 C 0.043 3.957 7 N -0.869 5.869 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.436 3.564 13 O -0.574 6.574 14 C 0.100 3.900 15 H 0.108 0.892 16 O -0.545 6.545 17 C -0.113 4.113 18 C -0.064 4.064 19 C -0.072 4.072 20 C -0.120 4.120 21 C -0.081 4.081 22 C -0.183 4.183 23 C 0.509 3.491 24 F -0.178 7.178 25 F -0.180 7.180 26 F -0.175 7.175 27 C -0.069 4.069 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.269 0.731 34 H 0.377 0.623 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -9.022 13.896 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.154 5.154 4 C -0.443 4.443 5 H 0.105 0.895 6 C -0.162 4.162 7 N -0.506 5.506 8 Si 0.744 3.256 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.223 3.777 13 O -0.457 6.457 14 C 0.037 3.963 15 H 0.126 0.874 16 O -0.350 6.350 17 C -0.150 4.150 18 C -0.064 4.064 19 C -0.090 4.090 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.185 4.185 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.161 7.161 26 F -0.157 7.157 27 C -0.087 4.087 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.225 0.775 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.495 -8.892 13.869 16.542 hybrid contribution 0.334 0.021 -1.060 1.111 sum -1.160 -8.871 12.810 15.624 Atomic orbital electron populations 1.22204 0.97854 1.00569 1.01831 1.21656 0.92198 0.85722 1.03505 1.43433 1.55813 1.11735 1.04414 1.19310 1.37726 0.98622 0.88605 0.89490 1.25400 0.93762 0.96524 1.00472 1.69904 1.28361 1.19342 1.33003 0.86154 0.78567 0.79004 0.81922 1.19708 1.20939 1.19820 1.21081 0.81949 0.88752 0.85889 1.90529 1.51771 1.16523 1.86901 1.21804 0.98677 0.89155 0.86670 0.87450 1.86492 1.45783 1.53350 1.49379 1.21387 0.99581 0.98482 0.95600 1.19821 0.96862 0.94021 0.95687 1.21311 0.96921 0.99004 0.91734 1.21107 0.99403 0.94403 0.98913 1.20861 0.96323 0.96621 0.96112 1.19880 1.06649 0.95055 0.96898 1.18336 0.77285 0.85397 0.73530 1.93221 1.66544 1.62093 1.94098 1.93173 1.82346 1.95351 1.45265 1.93207 1.66525 1.96701 1.59234 1.20890 0.96492 0.93804 0.97520 0.93841 0.92114 0.92875 0.87817 0.92956 0.92112 0.77512 0.89689 0.88027 0.85062 0.84986 0.85082 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.15 37.15 0.38 -2.54 16 2 C 0.09 1.88 5.18 -4.04 -0.02 1.86 16 3 N -0.43 -10.39 2.48 -114.82 -0.28 -10.68 16 4 C -0.31 -8.42 8.83 -14.94 -0.13 -8.55 16 5 H 0.09 2.47 7.81 -52.49 -0.41 2.06 16 6 C 0.04 1.11 4.96 -17.47 -0.09 1.02 16 7 N -0.87 -22.36 11.70 55.50 0.65 -21.71 16 8 Si 0.92 20.05 29.60 -169.99 -5.03 15.02 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.44 10.16 6.93 -10.99 -0.08 10.08 16 13 O -0.57 -15.49 16.21 -14.00 -0.23 -15.71 16 14 C 0.10 1.78 2.53 -27.89 -0.07 1.71 16 15 H 0.11 1.85 6.62 -51.93 -0.34 1.51 16 16 O -0.55 -9.38 12.53 -54.78 -0.69 -10.07 16 17 C -0.11 -1.72 4.65 -27.88 -0.13 -1.85 16 18 C -0.06 -0.83 4.96 -104.62 -0.52 -1.35 16 19 C -0.07 -0.81 9.38 -39.58 -0.37 -1.18 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.08 -0.84 9.40 -39.58 -0.37 -1.21 16 22 C -0.18 -2.18 5.45 -104.63 -0.57 -2.75 16 23 C 0.51 5.99 3.37 36.00 0.12 6.11 16 24 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 25 F -0.18 -2.05 16.45 2.25 0.04 -2.01 16 26 F -0.18 -2.20 16.46 2.25 0.04 -2.17 16 27 C -0.07 -0.88 9.05 -39.59 -0.36 -1.24 16 28 H 0.04 0.73 7.45 -51.93 -0.39 0.34 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.10 2.32 5.82 -51.93 -0.30 2.02 16 32 H 0.05 0.92 4.57 -51.93 -0.24 0.68 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.38 5.71 8.70 45.56 0.40 6.11 16 35 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.10 1.67 6.01 -51.93 -0.31 1.35 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.09 7.60 -52.49 -0.40 0.69 16 40 H 0.14 1.67 7.60 -52.49 -0.40 1.28 16 LS Contribution 349.92 15.07 5.27 5.27 Total: -1.00 -30.40 349.92 -6.44 -36.84 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.64 Total: 8.80 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.61 Total: -1.46 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.36 Total: -32.38 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.91 Total: -25.78 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.11 Total: -6.30 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.40 -6.44 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275111940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.143 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds