Wall clock time and date at job start Tue Mar 31 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47373 * 2 1 4 4 C 1.37093 * 119.99753 * 269.70392 * 3 2 1 5 5 H 1.08000 * 120.00096 * 137.62859 * 4 3 2 6 6 C 1.38949 * 119.99960 * 317.63300 * 4 3 2 7 7 N 1.31410 * 120.00122 * 340.57163 * 6 4 3 8 8 Si 1.86802 * 120.00000 * 160.57539 * 6 4 3 9 9 H 1.48495 * 109.47279 * 59.99719 * 8 6 4 10 10 H 1.48503 * 109.47286 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47025 * 299.99876 * 8 6 4 12 12 C 1.34774 * 119.99894 * 89.69506 * 3 2 1 13 13 O 1.21291 * 119.99507 * 185.14725 * 12 3 2 14 14 C 1.50697 * 120.00122 * 5.15774 * 12 3 2 15 15 H 1.09001 * 109.47208 * 313.25216 * 14 12 3 16 16 O 1.42905 * 109.46806 * 193.25232 * 14 12 3 17 17 C 1.52996 * 109.47482 * 73.25541 * 14 12 3 18 18 C 1.50701 * 109.47388 * 184.28926 * 17 14 12 19 19 C 1.38258 * 119.99795 * 269.97833 * 18 17 14 20 20 C 1.38213 * 119.99836 * 179.97438 * 19 18 17 21 21 C 1.38260 * 119.99848 * 359.73836 * 20 19 18 22 22 C 1.38213 * 119.99874 * 0.53989 * 21 20 19 23 23 C 1.50697 * 119.99703 * 179.73919 * 22 21 20 24 24 F 1.39899 * 109.47124 * 269.72146 * 23 22 21 25 25 F 1.39898 * 109.47737 * 29.72270 * 23 22 21 26 26 F 1.39900 * 109.47076 * 149.72199 * 23 22 21 27 27 C 1.38212 * 120.00102 * 89.99427 * 18 17 14 28 28 H 1.08997 * 109.47374 * 299.99896 * 1 2 3 29 29 H 1.09001 * 109.47263 * 60.00064 * 1 2 3 30 30 H 1.09007 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47248 * 239.99564 * 2 1 3 32 32 H 1.09001 * 109.47263 * 119.99936 * 2 1 3 33 33 H 0.97001 * 120.00242 * 179.97438 * 7 6 4 34 34 H 0.96697 * 114.00080 * 299.99939 * 16 14 12 35 35 H 1.08995 * 109.47264 * 64.28725 * 17 14 12 36 36 H 1.09002 * 109.46646 * 304.28628 * 17 14 12 37 37 H 1.07995 * 120.00360 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.99761 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99824 * 180.27261 * 21 20 19 40 40 H 1.08001 * 119.99838 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2526 2.0254 -1.1873 5 1 1.9485 3.0540 -1.3127 6 6 2.8813 1.3548 -2.2292 7 7 3.5839 0.2716 -1.9844 8 14 2.7279 1.9931 -3.9781 9 1 3.2796 3.3697 -4.0528 10 1 3.4856 1.1061 -4.8971 11 1 1.2969 2.0111 -4.3747 12 6 2.2371 2.0186 1.1672 13 8 2.5514 3.1901 1.1687 14 6 2.0915 1.2757 2.4702 15 1 1.1628 0.7053 2.4614 16 8 2.0664 2.2103 3.5510 17 6 3.2743 0.3217 2.6484 18 6 3.0759 -0.4965 3.8983 19 6 3.5617 -0.0383 5.1088 20 6 3.3793 -0.7886 6.2552 21 6 2.7062 -1.9946 6.1923 22 6 2.2256 -2.4554 4.9811 23 6 1.4971 -3.7727 4.9115 24 9 2.4142 -4.8003 4.6661 25 9 0.8451 -4.0099 6.1263 26 9 0.5558 -3.7310 3.8774 27 6 2.4085 -1.7052 3.8343 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0225 -0.1968 -2.7119 34 1 2.8634 2.7536 3.6198 35 1 4.1959 0.8975 2.7336 36 1 3.3388 -0.3419 1.7861 37 1 4.0838 0.9057 5.1588 38 1 3.7592 -0.4308 7.2008 39 1 2.5598 -2.5788 7.0888 40 1 2.0289 -2.0630 2.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275111940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:16 Heat of formation + Delta-G solvation = -229.252941 kcal Electronic energy + Delta-G solvation = -29133.041037 eV Core-core repulsion = 24497.119615 eV Total energy + Delta-G solvation = -4635.921422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.16170 -48.67646 -48.63156 -41.19761 -40.18534 -37.74449 -36.76540 -34.37670 -33.80446 -32.72115 -31.19917 -30.20899 -27.24000 -26.98739 -25.36903 -23.91669 -23.18321 -22.18419 -21.16935 -19.49454 -19.38089 -19.18342 -18.79695 -18.17301 -17.51435 -17.21485 -16.85876 -16.51239 -16.05394 -15.70859 -15.54751 -15.49375 -15.20477 -15.10433 -15.04712 -14.85440 -14.79166 -14.78524 -14.51983 -14.08251 -13.73890 -13.59849 -13.57806 -13.47410 -13.12568 -12.89831 -12.80586 -12.61700 -12.31682 -12.21300 -12.13628 -12.08387 -11.80413 -11.63019 -10.90310 -10.28587 -10.13894 -9.73700 -9.40540 -8.35573 -6.12707 -0.01202 0.26807 1.38536 1.42024 1.50963 1.66636 1.92914 2.28538 2.51889 2.72751 2.96632 2.96907 3.04119 3.37153 3.43167 3.70250 3.83450 3.97196 3.99625 4.06993 4.18007 4.24736 4.33726 4.42083 4.57747 4.58577 4.75526 4.82776 4.86281 4.96813 5.06201 5.18369 5.26512 5.34365 5.44061 5.50741 5.53184 5.83014 6.21801 6.47691 6.66084 7.15488 7.41549 8.00315 8.67178 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003561 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.131030 B = 7861.574684 C = 8832.585234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.443 5.443 4 C -0.349 4.349 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.883 5.883 8 Si 0.976 3.024 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.266 1.266 12 C 0.422 3.578 13 O -0.623 6.623 14 C 0.118 3.882 15 H 0.117 0.883 16 O -0.546 6.546 17 C -0.099 4.099 18 C -0.079 4.079 19 C -0.075 4.075 20 C -0.113 4.113 21 C -0.077 4.077 22 C -0.193 4.193 23 C 0.511 3.489 24 F -0.181 7.181 25 F -0.177 7.177 26 F -0.182 7.182 27 C -0.080 4.080 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.274 0.726 34 H 0.386 0.614 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -10.278 15.418 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.031 4.031 3 N -0.163 5.163 4 C -0.477 4.477 5 H 0.076 0.924 6 C -0.190 4.190 7 N -0.520 5.520 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.190 1.190 12 C 0.211 3.789 13 O -0.510 6.510 14 C 0.055 3.945 15 H 0.135 0.865 16 O -0.351 6.351 17 C -0.137 4.137 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.130 4.130 21 C -0.095 4.095 22 C -0.194 4.194 23 C 0.457 3.543 24 F -0.163 7.163 25 F -0.158 7.158 26 F -0.163 7.163 27 C -0.098 4.098 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.559 -10.186 15.398 18.528 hybrid contribution 0.382 0.396 -1.459 1.559 sum -1.178 -9.790 13.939 17.074 Atomic orbital electron populations 1.22127 0.95662 1.02587 1.01259 1.21773 0.93973 0.83723 1.03619 1.43672 1.55666 1.12891 1.04028 1.19234 1.39552 0.98182 0.90715 0.92421 1.26042 0.92917 0.96631 1.03381 1.69957 1.28126 1.19766 1.34114 0.85279 0.78891 0.78147 0.77749 1.20393 1.19576 1.19048 1.22077 0.80754 0.88504 0.87609 1.90480 1.53825 1.18699 1.87948 1.21627 1.00267 0.88943 0.83660 0.86530 1.86465 1.46620 1.53527 1.48527 1.21155 0.98233 0.97785 0.96544 1.19596 0.98768 0.94258 0.95256 1.21557 0.96478 0.99740 0.91514 1.21470 0.98260 0.93652 0.99668 1.21228 0.95108 0.96857 0.96270 1.19947 1.07193 0.94987 0.97306 1.18333 0.77119 0.85400 0.73434 1.93215 1.66647 1.62291 1.94133 1.93177 1.82283 1.95344 1.44984 1.93192 1.66795 1.96729 1.59612 1.20909 0.96922 0.94031 0.97975 0.93221 0.93845 0.89501 0.89980 0.90499 0.91613 0.76488 0.89816 0.89498 0.83710 0.81673 0.82800 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 10.15 71.98 0.73 -4.70 16 2 C 0.09 3.74 5.18 86.38 0.45 4.18 16 3 N -0.44 -21.80 2.48 -635.56 -1.58 -23.38 16 4 C -0.35 -19.33 8.83 84.04 0.74 -18.59 16 5 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 6 C 0.01 0.73 4.96 84.93 0.42 1.15 16 7 N -0.88 -45.77 11.70 21.66 0.25 -45.51 16 8 Si 0.98 41.46 29.60 68.60 2.03 43.49 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 12 C 0.42 20.14 6.93 87.66 0.61 20.75 16 13 O -0.62 -34.89 16.21 15.63 0.25 -34.64 16 14 C 0.12 4.16 2.53 29.85 0.08 4.24 16 15 H 0.12 3.90 6.62 -2.39 -0.02 3.89 16 16 O -0.55 -18.32 12.53 -130.29 -1.63 -19.95 16 17 C -0.10 -2.99 4.65 29.85 0.14 -2.85 16 18 C -0.08 -1.94 4.96 -19.87 -0.10 -2.04 16 19 C -0.08 -1.50 9.38 22.27 0.21 -1.29 16 20 C -0.11 -1.79 10.05 22.27 0.22 -1.57 16 21 C -0.08 -1.33 9.40 22.27 0.21 -1.12 16 22 C -0.19 -4.17 5.45 -19.87 -0.11 -4.28 16 23 C 0.51 11.14 3.37 71.24 0.24 11.38 16 24 F -0.18 -4.13 17.30 44.97 0.78 -3.35 16 25 F -0.18 -3.63 16.45 44.97 0.74 -2.89 16 26 F -0.18 -4.33 16.46 44.97 0.74 -3.59 16 27 C -0.08 -1.93 9.05 22.27 0.20 -1.73 16 28 H 0.05 1.62 7.45 -2.39 -0.02 1.61 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.08 3.72 5.82 -2.39 -0.01 3.70 16 32 H 0.08 2.69 4.57 -2.39 -0.01 2.68 16 33 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.39 11.49 8.70 -74.06 -0.64 10.85 16 35 H 0.08 2.50 8.08 -2.39 -0.02 2.48 16 36 H 0.09 2.86 6.01 -2.39 -0.01 2.84 16 37 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.94 7.60 -2.91 -0.02 1.92 16 40 H 0.13 3.17 7.60 -2.91 -0.02 3.15 16 Total: -1.00 -67.12 349.92 6.09 -61.03 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.46 Total: 25.24 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 4.04 Total: 3.55 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.32 Total: -68.89 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.38 Total: -54.59 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 2.26 Total: -9.83 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.12 6.09 -61.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275111940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.222 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds